mRNA_18420 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|148362 vs. uniprot
Match: A0A835Z2J2_9STRA (SOS response UmuD protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2J2_9STRA) HSP 1 Score: 244 bits (623), Expect = 6.360e-82 Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 1 Query: 1 LAGEVPAGFPSPAEDFAAKPLDLHELLIAHPQATFFLRLRGESLRDAGILDGDIVVVDRALKPVGGDLVVAEVGHEFTCKFLRYRGRRPVLSAANPTYPDIVPDAEQGMRVFGVVTGIVRS 363 LAGEVPAGFPSPAEDFAAKPLDLHELLIAHPQATFFLRLRGESLRDAGILDGDIVVVDRALKPVGGDLVVAEVGHEFTCKFLRYRGRRPVLSAANPTYPDIVPDAEQGMRVFGVVTGIVRS Sbjct: 1 LAGEVPAGFPSPAEDFAAKPLDLHELLIAHPQATFFLRLRGESLRDAGILDGDIVVVDRALKPVGGDLVVAEVGHEFTCKFLRYRGRRPVLSAANPTYPDIVPDAEQGMRVFGVVTGIVRS 121
BLAST of jgi.p|Trimin1|148362 vs. uniprot
Match: A2SMN8_METPP (SOS response UmuD protein, Serine peptidase, MEROPS family S24 n=2 Tax=Methylibium TaxID=316612 RepID=A2SMN8_METPP) HSP 1 Score: 142 bits (359), Expect = 1.790e-41 Identity = 73/121 (60.33%), Postives = 89/121 (73.55%), Query Frame = 1 Query: 1 LAGEVPAGFPSPAEDFAAKPLDLHELLIAHPQATFFLRLRGESLRDAGILDGDIVVVDRALKPVGGDLVVAEVGHEFTCKFLRYRGRRPVLSAANPTYPDIVPDAEQGMRVFGVVTGIVRS 363 L V AGFPSPAED A K +DL+E+LI HPQ+TF +R+RG S+R+AGI DGD+V+VDRA+ P G +VVA V HEFT K L RG R L AANPTYPDIVP Q + V+GVVT ++S Sbjct: 14 LPQSVQAGFPSPAEDHAVKRIDLNEVLIKHPQSTFLMRVRGPSMREAGIDDGDVVLVDRAITPCHGHVVVAVVDHEFTVKRLWKRGSRVKLQAANPTYPDIVPKDGQEVEVWGVVTNAIKS 134
BLAST of jgi.p|Trimin1|148362 vs. uniprot
Match: UPI001CEDB06B (translesion error-prone DNA polymerase V autoproteolytic subunit n=1 Tax=Ideonella sp. B7 TaxID=2831643 RepID=UPI001CEDB06B) HSP 1 Score: 141 bits (355), Expect = 5.360e-41 Identity = 69/120 (57.50%), Postives = 91/120 (75.83%), Query Frame = 1 Query: 1 LAGEVPAGFPSPAEDFAAKPLDLHELLIAHPQATFFLRLRGESLRDAGILDGDIVVVDRALKPVGGDLVVAEVGHEFTCKFLRYRGRRPVLSAANPTYPDIVPDAEQGMRVFGVVTGIVR 360 +A + AGFPSPAED AAKP+DL+E+LI HP +T+ +R+RG S+R+AGI DGD+V+VDRA+KPV G +VVA V ++FT K L RG L AANPTYPDIVP Q + ++GVVT ++ Sbjct: 4 IAATIAAGFPSPAEDHAAKPVDLNEVLIKHPLSTYLMRVRGASMREAGIDDGDVVLVDRAIKPVHGHIVVAVVDNDFTVKRLWRRGSNIKLQAANPTYPDIVPREGQTVEIWGVVTNAIK 123
BLAST of jgi.p|Trimin1|148362 vs. uniprot
Match: A0A519HPZ4_9BURK (Translesion error-prone DNA polymerase V autoproteolytic subunit n=1 Tax=Rubrivivax sp. TaxID=50259 RepID=A0A519HPZ4_9BURK) HSP 1 Score: 139 bits (350), Expect = 5.340e-40 Identity = 67/116 (57.76%), Postives = 87/116 (75.00%), Query Frame = 1 Query: 13 VPAGFPSPAEDFAAKPLDLHELLIAHPQATFFLRLRGESLRDAGILDGDIVVVDRALKPVGGDLVVAEVGHEFTCKFLRYRGRRPVLSAANPTYPDIVPDAEQGMRVFGVVTGIVR 360 V AGFPSPA+DFA K +DL+++LI HPQAT+ LR+ G+S+RDAGI DGD +V +RAL+ G++VVA V EFTCK+L R R L AANPT+P+IVP Q + VFGVVT ++ Sbjct: 26 VQAGFPSPADDFAVKRIDLNDILITHPQATYLLRVAGDSMRDAGIFDGDTIVCNRALRARHGNVVVATVDGEFTCKYLHQRAGRVKLRAANPTFPEIVPREGQTLEVFGVVTATIK 141
BLAST of jgi.p|Trimin1|148362 vs. uniprot
Match: UPI00164DFB59 (translesion error-prone DNA polymerase V autoproteolytic subunit n=1 Tax=Ramlibacter sp. USB13 TaxID=2764187 RepID=UPI00164DFB59) HSP 1 Score: 138 bits (347), Expect = 8.060e-40 Identity = 70/118 (59.32%), Postives = 87/118 (73.73%), Query Frame = 1 Query: 7 GEVPAGFPSPAEDFAAKPLDLHELLIAHPQATFFLRLRGESLRDAGILDGDIVVVDRALKPVGGDLVVAEVGHEFTCKFLRYRGRRPVLSAANPTYPDIVPDAEQGMRVFGVVTGIVR 360 G V AGFPSPA+DFA K DL++LLI HP ATFF R+RG S+ AG+ DGDI+VV+RAL PV GD+VVAEV ++FT K+L R R L AA+PT+PDIVP Q + + GVVT +R Sbjct: 4 GTVRAGFPSPADDFAEKRHDLNDLLITHPAATFFWRVRGTSMHGAGVADGDILVVNRALDPVHGDIVVAEVDNDFTVKYLHRRAGRVKLVAADPTFPDIVPREGQVLTICGVVTAAIR 121
BLAST of jgi.p|Trimin1|148362 vs. uniprot
Match: UPI000491FCDA (translesion error-prone DNA polymerase V autoproteolytic subunit n=1 Tax=Ottowia thiooxydans TaxID=219182 RepID=UPI000491FCDA) HSP 1 Score: 137 bits (346), Expect = 2.100e-39 Identity = 71/116 (61.21%), Postives = 84/116 (72.41%), Query Frame = 1 Query: 13 VPAGFPSPAEDFAAKPLDLHELLIAHPQATFFLRLRGESLRDAGILDGDIVVVDRALKPVGGDLVVAEVGHEFTCKFLRYRGRRPVLSAANPTYPDIVPDAEQGMRVFGVVTGIVR 360 V AGFPSPAEDFA K +DL L+ HPQATF +R+RGES+RDAGI DGD ++VDRALKP G +VVA V EFT K L R R L AANPTYPDI P +Q + V+GVVT ++ Sbjct: 25 VCAGFPSPAEDFAVKRIDLTAELVKHPQATFLIRVRGESMRDAGIFDGDTLIVDRALKPRHGHIVVAVVDGEFTVKTLYQRAGRIKLKAANPTYPDISPGNDQTIEVWGVVTSSIK 140
BLAST of jgi.p|Trimin1|148362 vs. uniprot
Match: A0A3S0C567_9BURK (Translesion error-prone DNA polymerase V autoproteolytic subunit n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A3S0C567_9BURK) HSP 1 Score: 137 bits (346), Expect = 2.230e-39 Identity = 72/121 (59.50%), Postives = 89/121 (73.55%), Query Frame = 1 Query: 1 LAGE-VPAGFPSPAEDFAAKPLDLHELLIAHPQATFFLRLRGESLRDAGILDGDIVVVDRALKPVGGDLVVAEVGHEFTCKFLRYRGRRPVLSAANPTYPDIVPDAEQGMRVFGVVTGIVR 360 LAG+ V AGFPSPAEDFA K +DL E+L+ HPQATF LR+RG+S+R+AGI DGD +VVDRA+KP G +VVA V EFT K L R R L ANPTYP+I+P Q + V+GVVT ++ Sbjct: 22 LAGDCVQAGFPSPAEDFAVKRIDLTEILVKHPQATFLLRVRGDSMREAGIFDGDTLVVDRAIKPHHGHIVVAVVEGEFTVKQLHDRAGRIKLKPANPTYPEIIPRDGQTVEVWGVVTASIK 142
BLAST of jgi.p|Trimin1|148362 vs. uniprot
Match: A0A4V3CW28_9BURK (SOS response UmuD protein n=1 Tax=Aquabacterium commune TaxID=70586 RepID=A0A4V3CW28_9BURK) HSP 1 Score: 137 bits (346), Expect = 2.230e-39 Identity = 70/121 (57.85%), Postives = 89/121 (73.55%), Query Frame = 1 Query: 1 LAGE-VPAGFPSPAEDFAAKPLDLHELLIAHPQATFFLRLRGESLRDAGILDGDIVVVDRALKPVGGDLVVAEVGHEFTCKFLRYRGRRPVLSAANPTYPDIVPDAEQGMRVFGVVTGIVR 360 LAG+ V AGFPSPAEDFA K +DL E+L+ HPQATF LR+ GES+RDAGI DGD++VVD+A+KP G +VVA V EFT K+L R R L AN T+P+I+P Q + V+GVVT ++ Sbjct: 22 LAGDRVQAGFPSPAEDFAVKRIDLTEVLVTHPQATFLLRVSGESMRDAGIFDGDMLVVDKAIKPRHGHIVVAVVDGEFTVKYLHMRAGRVKLKPANATFPEILPKEGQTLEVWGVVTSAIK 142
BLAST of jgi.p|Trimin1|148362 vs. uniprot
Match: UPI00056E6286 (translesion error-prone DNA polymerase V autoproteolytic subunit n=1 Tax=Xenophilus azovorans TaxID=151755 RepID=UPI00056E6286) HSP 1 Score: 137 bits (346), Expect = 2.230e-39 Identity = 70/118 (59.32%), Postives = 86/118 (72.88%), Query Frame = 1 Query: 7 GEVPAGFPSPAEDFAAKPLDLHELLIAHPQATFFLRLRGESLRDAGILDGDIVVVDRALKPVGGDLVVAEVGHEFTCKFLRYRGRRPVLSAANPTYPDIVPDAEQGMRVFGVVTGIVR 360 G VPAGFPSPAED+A K DL+ELLI HP ATFF ++ G S+R+AGI DGDI+VVDRALK GD+VVA+V +FT K+LR R RP L ANPT+P I Q + V GVVT +++ Sbjct: 25 GRVPAGFPSPAEDYAVKRQDLNELLIRHPHATFFWQVSGFSMREAGIEDGDILVVDRALKARSGDIVVAQVDGDFTVKYLRLRANRPRLEPANPTFPTITFREGQQLIVCGVVTAVIK 142
BLAST of jgi.p|Trimin1|148362 vs. uniprot
Match: A0A1B3PLD6_9BURK (Peptidase S24-like family protein n=3 Tax=unclassified Acidovorax TaxID=2684926 RepID=A0A1B3PLD6_9BURK) HSP 1 Score: 136 bits (343), Expect = 6.180e-39 Identity = 69/116 (59.48%), Postives = 86/116 (74.14%), Query Frame = 1 Query: 13 VPAGFPSPAEDFAAKPLDLHELLIAHPQATFFLRLRGESLRDAGILDGDIVVVDRALKPVGGDLVVAEVGHEFTCKFLRYRGRRPVLSAANPTYPDIVPDAEQGMRVFGVVTGIVR 360 V AGFPSPAEDF LDL +L+ HPQATF LRLRG+S++DAG+ DGD++VV+RALKPV D+VVA V EFTCK L + R L AANPTYP+IVP Q + ++GVVT ++ Sbjct: 23 VRAGFPSPAEDFHVDRLDLTAILVTHPQATFLLRLRGDSMKDAGLFDGDLLVVNRALKPVHQDVVVAVVDGEFTCKSLWLKYGRMKLVAANPTYPEIVPKDGQTVEIWGVVTASIK 138 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|148362 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_18420 ID=mRNA_18420|Name=jgi.p|Trimin1|148362|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=363bp|location=Sequence derived from alignment at Contig_400:6333..6695- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CTGGCTGGCGAGGTCCCGGCAGGCTTCCCTTCGCCTGCAGAGGATTTCGCback to top protein sequence of jgi.p|Trimin1|148362 >Trimin1|148362|gw1.400.13.1 ID=Trimin1|148362|gw1.400.13.1|Name=jgi.p|Trimin1|148362|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=121bp LAGEVPAGFPSPAEDFAAKPLDLHELLIAHPQATFFLRLRGESLRDAGILback to top mRNA from alignment at Contig_400:6333..6695- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_18420 ID=mRNA_18420|Name=jgi.p|Trimin1|148362|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=363bp|location=Sequence derived from alignment at Contig_400:6333..6695- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_400:6333..6695- >mRNA_18420 ID=mRNA_18420|Name=jgi.p|Trimin1|148362|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=363bp|location=Sequence derived from alignment at Contig_400:6333..6695- (Tribonema minus UTEX_B_3156 )back to top |