mRNA_18420 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|148362
Unique NamemRNA_18420
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|148362 vs. uniprot
Match: A0A835Z2J2_9STRA (SOS response UmuD protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2J2_9STRA)

HSP 1 Score: 244 bits (623), Expect = 6.360e-82
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 1
Query:    1 LAGEVPAGFPSPAEDFAAKPLDLHELLIAHPQATFFLRLRGESLRDAGILDGDIVVVDRALKPVGGDLVVAEVGHEFTCKFLRYRGRRPVLSAANPTYPDIVPDAEQGMRVFGVVTGIVRS 363
            LAGEVPAGFPSPAEDFAAKPLDLHELLIAHPQATFFLRLRGESLRDAGILDGDIVVVDRALKPVGGDLVVAEVGHEFTCKFLRYRGRRPVLSAANPTYPDIVPDAEQGMRVFGVVTGIVRS
Sbjct:    1 LAGEVPAGFPSPAEDFAAKPLDLHELLIAHPQATFFLRLRGESLRDAGILDGDIVVVDRALKPVGGDLVVAEVGHEFTCKFLRYRGRRPVLSAANPTYPDIVPDAEQGMRVFGVVTGIVRS 121          
BLAST of jgi.p|Trimin1|148362 vs. uniprot
Match: A2SMN8_METPP (SOS response UmuD protein, Serine peptidase, MEROPS family S24 n=2 Tax=Methylibium TaxID=316612 RepID=A2SMN8_METPP)

HSP 1 Score: 142 bits (359), Expect = 1.790e-41
Identity = 73/121 (60.33%), Postives = 89/121 (73.55%), Query Frame = 1
Query:    1 LAGEVPAGFPSPAEDFAAKPLDLHELLIAHPQATFFLRLRGESLRDAGILDGDIVVVDRALKPVGGDLVVAEVGHEFTCKFLRYRGRRPVLSAANPTYPDIVPDAEQGMRVFGVVTGIVRS 363
            L   V AGFPSPAED A K +DL+E+LI HPQ+TF +R+RG S+R+AGI DGD+V+VDRA+ P  G +VVA V HEFT K L  RG R  L AANPTYPDIVP   Q + V+GVVT  ++S
Sbjct:   14 LPQSVQAGFPSPAEDHAVKRIDLNEVLIKHPQSTFLMRVRGPSMREAGIDDGDVVLVDRAITPCHGHVVVAVVDHEFTVKRLWKRGSRVKLQAANPTYPDIVPKDGQEVEVWGVVTNAIKS 134          
BLAST of jgi.p|Trimin1|148362 vs. uniprot
Match: UPI001CEDB06B (translesion error-prone DNA polymerase V autoproteolytic subunit n=1 Tax=Ideonella sp. B7 TaxID=2831643 RepID=UPI001CEDB06B)

HSP 1 Score: 141 bits (355), Expect = 5.360e-41
Identity = 69/120 (57.50%), Postives = 91/120 (75.83%), Query Frame = 1
Query:    1 LAGEVPAGFPSPAEDFAAKPLDLHELLIAHPQATFFLRLRGESLRDAGILDGDIVVVDRALKPVGGDLVVAEVGHEFTCKFLRYRGRRPVLSAANPTYPDIVPDAEQGMRVFGVVTGIVR 360
            +A  + AGFPSPAED AAKP+DL+E+LI HP +T+ +R+RG S+R+AGI DGD+V+VDRA+KPV G +VVA V ++FT K L  RG    L AANPTYPDIVP   Q + ++GVVT  ++
Sbjct:    4 IAATIAAGFPSPAEDHAAKPVDLNEVLIKHPLSTYLMRVRGASMREAGIDDGDVVLVDRAIKPVHGHIVVAVVDNDFTVKRLWRRGSNIKLQAANPTYPDIVPREGQTVEIWGVVTNAIK 123          
BLAST of jgi.p|Trimin1|148362 vs. uniprot
Match: A0A519HPZ4_9BURK (Translesion error-prone DNA polymerase V autoproteolytic subunit n=1 Tax=Rubrivivax sp. TaxID=50259 RepID=A0A519HPZ4_9BURK)

HSP 1 Score: 139 bits (350), Expect = 5.340e-40
Identity = 67/116 (57.76%), Postives = 87/116 (75.00%), Query Frame = 1
Query:   13 VPAGFPSPAEDFAAKPLDLHELLIAHPQATFFLRLRGESLRDAGILDGDIVVVDRALKPVGGDLVVAEVGHEFTCKFLRYRGRRPVLSAANPTYPDIVPDAEQGMRVFGVVTGIVR 360
            V AGFPSPA+DFA K +DL+++LI HPQAT+ LR+ G+S+RDAGI DGD +V +RAL+   G++VVA V  EFTCK+L  R  R  L AANPT+P+IVP   Q + VFGVVT  ++
Sbjct:   26 VQAGFPSPADDFAVKRIDLNDILITHPQATYLLRVAGDSMRDAGIFDGDTIVCNRALRARHGNVVVATVDGEFTCKYLHQRAGRVKLRAANPTFPEIVPREGQTLEVFGVVTATIK 141          
BLAST of jgi.p|Trimin1|148362 vs. uniprot
Match: UPI00164DFB59 (translesion error-prone DNA polymerase V autoproteolytic subunit n=1 Tax=Ramlibacter sp. USB13 TaxID=2764187 RepID=UPI00164DFB59)

HSP 1 Score: 138 bits (347), Expect = 8.060e-40
Identity = 70/118 (59.32%), Postives = 87/118 (73.73%), Query Frame = 1
Query:    7 GEVPAGFPSPAEDFAAKPLDLHELLIAHPQATFFLRLRGESLRDAGILDGDIVVVDRALKPVGGDLVVAEVGHEFTCKFLRYRGRRPVLSAANPTYPDIVPDAEQGMRVFGVVTGIVR 360
            G V AGFPSPA+DFA K  DL++LLI HP ATFF R+RG S+  AG+ DGDI+VV+RAL PV GD+VVAEV ++FT K+L  R  R  L AA+PT+PDIVP   Q + + GVVT  +R
Sbjct:    4 GTVRAGFPSPADDFAEKRHDLNDLLITHPAATFFWRVRGTSMHGAGVADGDILVVNRALDPVHGDIVVAEVDNDFTVKYLHRRAGRVKLVAADPTFPDIVPREGQVLTICGVVTAAIR 121          
BLAST of jgi.p|Trimin1|148362 vs. uniprot
Match: UPI000491FCDA (translesion error-prone DNA polymerase V autoproteolytic subunit n=1 Tax=Ottowia thiooxydans TaxID=219182 RepID=UPI000491FCDA)

HSP 1 Score: 137 bits (346), Expect = 2.100e-39
Identity = 71/116 (61.21%), Postives = 84/116 (72.41%), Query Frame = 1
Query:   13 VPAGFPSPAEDFAAKPLDLHELLIAHPQATFFLRLRGESLRDAGILDGDIVVVDRALKPVGGDLVVAEVGHEFTCKFLRYRGRRPVLSAANPTYPDIVPDAEQGMRVFGVVTGIVR 360
            V AGFPSPAEDFA K +DL   L+ HPQATF +R+RGES+RDAGI DGD ++VDRALKP  G +VVA V  EFT K L  R  R  L AANPTYPDI P  +Q + V+GVVT  ++
Sbjct:   25 VCAGFPSPAEDFAVKRIDLTAELVKHPQATFLIRVRGESMRDAGIFDGDTLIVDRALKPRHGHIVVAVVDGEFTVKTLYQRAGRIKLKAANPTYPDISPGNDQTIEVWGVVTSSIK 140          
BLAST of jgi.p|Trimin1|148362 vs. uniprot
Match: A0A3S0C567_9BURK (Translesion error-prone DNA polymerase V autoproteolytic subunit n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A3S0C567_9BURK)

HSP 1 Score: 137 bits (346), Expect = 2.230e-39
Identity = 72/121 (59.50%), Postives = 89/121 (73.55%), Query Frame = 1
Query:    1 LAGE-VPAGFPSPAEDFAAKPLDLHELLIAHPQATFFLRLRGESLRDAGILDGDIVVVDRALKPVGGDLVVAEVGHEFTCKFLRYRGRRPVLSAANPTYPDIVPDAEQGMRVFGVVTGIVR 360
            LAG+ V AGFPSPAEDFA K +DL E+L+ HPQATF LR+RG+S+R+AGI DGD +VVDRA+KP  G +VVA V  EFT K L  R  R  L  ANPTYP+I+P   Q + V+GVVT  ++
Sbjct:   22 LAGDCVQAGFPSPAEDFAVKRIDLTEILVKHPQATFLLRVRGDSMREAGIFDGDTLVVDRAIKPHHGHIVVAVVEGEFTVKQLHDRAGRIKLKPANPTYPEIIPRDGQTVEVWGVVTASIK 142          
BLAST of jgi.p|Trimin1|148362 vs. uniprot
Match: A0A4V3CW28_9BURK (SOS response UmuD protein n=1 Tax=Aquabacterium commune TaxID=70586 RepID=A0A4V3CW28_9BURK)

HSP 1 Score: 137 bits (346), Expect = 2.230e-39
Identity = 70/121 (57.85%), Postives = 89/121 (73.55%), Query Frame = 1
Query:    1 LAGE-VPAGFPSPAEDFAAKPLDLHELLIAHPQATFFLRLRGESLRDAGILDGDIVVVDRALKPVGGDLVVAEVGHEFTCKFLRYRGRRPVLSAANPTYPDIVPDAEQGMRVFGVVTGIVR 360
            LAG+ V AGFPSPAEDFA K +DL E+L+ HPQATF LR+ GES+RDAGI DGD++VVD+A+KP  G +VVA V  EFT K+L  R  R  L  AN T+P+I+P   Q + V+GVVT  ++
Sbjct:   22 LAGDRVQAGFPSPAEDFAVKRIDLTEVLVTHPQATFLLRVSGESMRDAGIFDGDMLVVDKAIKPRHGHIVVAVVDGEFTVKYLHMRAGRVKLKPANATFPEILPKEGQTLEVWGVVTSAIK 142          
BLAST of jgi.p|Trimin1|148362 vs. uniprot
Match: UPI00056E6286 (translesion error-prone DNA polymerase V autoproteolytic subunit n=1 Tax=Xenophilus azovorans TaxID=151755 RepID=UPI00056E6286)

HSP 1 Score: 137 bits (346), Expect = 2.230e-39
Identity = 70/118 (59.32%), Postives = 86/118 (72.88%), Query Frame = 1
Query:    7 GEVPAGFPSPAEDFAAKPLDLHELLIAHPQATFFLRLRGESLRDAGILDGDIVVVDRALKPVGGDLVVAEVGHEFTCKFLRYRGRRPVLSAANPTYPDIVPDAEQGMRVFGVVTGIVR 360
            G VPAGFPSPAED+A K  DL+ELLI HP ATFF ++ G S+R+AGI DGDI+VVDRALK   GD+VVA+V  +FT K+LR R  RP L  ANPT+P I     Q + V GVVT +++
Sbjct:   25 GRVPAGFPSPAEDYAVKRQDLNELLIRHPHATFFWQVSGFSMREAGIEDGDILVVDRALKARSGDIVVAQVDGDFTVKYLRLRANRPRLEPANPTFPTITFREGQQLIVCGVVTAVIK 142          
BLAST of jgi.p|Trimin1|148362 vs. uniprot
Match: A0A1B3PLD6_9BURK (Peptidase S24-like family protein n=3 Tax=unclassified Acidovorax TaxID=2684926 RepID=A0A1B3PLD6_9BURK)

HSP 1 Score: 136 bits (343), Expect = 6.180e-39
Identity = 69/116 (59.48%), Postives = 86/116 (74.14%), Query Frame = 1
Query:   13 VPAGFPSPAEDFAAKPLDLHELLIAHPQATFFLRLRGESLRDAGILDGDIVVVDRALKPVGGDLVVAEVGHEFTCKFLRYRGRRPVLSAANPTYPDIVPDAEQGMRVFGVVTGIVR 360
            V AGFPSPAEDF    LDL  +L+ HPQATF LRLRG+S++DAG+ DGD++VV+RALKPV  D+VVA V  EFTCK L  +  R  L AANPTYP+IVP   Q + ++GVVT  ++
Sbjct:   23 VRAGFPSPAEDFHVDRLDLTAILVTHPQATFLLRLRGDSMKDAGLFDGDLLVVNRALKPVHQDVVVAVVDGEFTCKSLWLKYGRMKLVAANPTYPEIVPKDGQTVEIWGVVTASIK 138          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|148362 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z2J2_9STRA6.360e-82100.00SOS response UmuD protein (Fragment) n=2 Tax=Tribo... [more]
A2SMN8_METPP1.790e-4160.33SOS response UmuD protein, Serine peptidase, MEROP... [more]
UPI001CEDB06B5.360e-4157.50translesion error-prone DNA polymerase V autoprote... [more]
A0A519HPZ4_9BURK5.340e-4057.76Translesion error-prone DNA polymerase V autoprote... [more]
UPI00164DFB598.060e-4059.32translesion error-prone DNA polymerase V autoprote... [more]
UPI000491FCDA2.100e-3961.21translesion error-prone DNA polymerase V autoprote... [more]
A0A3S0C567_9BURK2.230e-3959.50Translesion error-prone DNA polymerase V autoprote... [more]
A0A4V3CW28_9BURK2.230e-3957.85SOS response UmuD protein n=1 Tax=Aquabacterium co... [more]
UPI00056E62862.230e-3959.32translesion error-prone DNA polymerase V autoprote... [more]
A0A1B3PLD6_9BURK6.180e-3959.48Peptidase S24-like family protein n=3 Tax=unclassi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_400contigContig_400:6333..6695 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|148362|gw1.400.13.1
BRITEko00000,ko01000,ko01002,ko03400
KEGG koko:K03503
DescriptionPeptidase S24-like
COG categoryKT
Max annot lvl28216|Betaproteobacteria
EggNOG OGsCOG1974@1|root,COG1974@2|Bacteria,1MZFA@1224|Proteobacteria,2VU86@28216|Betaproteobacteria,1KMMJ@119065|unclassified Burkholderiales
Evalue2.94e-42
Seed ortholog420662.Mpe_B0048
Hectar predicted targeting categoryother localisation
TranscriptId148684
TrackFilteredModels1
ProteinId148362
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|148362gene_18420Tribonema minus UTEX_B_3156 geneContig_400 6333..6695 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18420_1exon_18420_1Tribonema minus UTEX_B_3156 exonContig_400 6333..6695 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18420CDS_18420Tribonema minus UTEX_B_3156 CDSContig_400 6333..6695 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|148362Trimin1|148362|gw1.400.13.1Tribonema minus UTEX_B_3156 polypeptideContig_400 6333..6695 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18420 ID=mRNA_18420|Name=jgi.p|Trimin1|148362|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=363bp|location=Sequence derived from alignment at Contig_400:6333..6695- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTGGCTGGCGAGGTCCCGGCAGGCTTCCCTTCGCCTGCAGAGGATTTCGC
CGCAAAGCCTCTGGATCTGCACGAGCTGCTGATTGCCCATCCGCAAGCTA
CGTTCTTCCTTCGGTTGCGCGGTGAGTCGCTGCGGGATGCGGGTATCTTG
GACGGGGATATTGTGGTGGTGGACAGGGCGCTCAAGCCTGTGGGCGGCGA
CCTGGTCGTTGCAGAGGTGGGACATGAGTTCACTTGCAAGTTCTTGCGTT
ATCGGGGCCGTAGGCCGGTCCTTTCGGCGGCCAACCCCACGTATCCAGAT
ATCGTTCCTGATGCAGAGCAGGGCATGCGGGTCTTTGGGGTTGTCACGGG
AATAGTGCGATCG
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protein sequence of jgi.p|Trimin1|148362

>Trimin1|148362|gw1.400.13.1 ID=Trimin1|148362|gw1.400.13.1|Name=jgi.p|Trimin1|148362|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=121bp
LAGEVPAGFPSPAEDFAAKPLDLHELLIAHPQATFFLRLRGESLRDAGIL
DGDIVVVDRALKPVGGDLVVAEVGHEFTCKFLRYRGRRPVLSAANPTYPD
IVPDAEQGMRVFGVVTGIVRS
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mRNA from alignment at Contig_400:6333..6695-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18420 ID=mRNA_18420|Name=jgi.p|Trimin1|148362|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=363bp|location=Sequence derived from alignment at Contig_400:6333..6695- (Tribonema minus UTEX_B_3156 )
CTGGCTGGCGAGGTCCCGGCAGGCTTCCCTTCGCCTGCAGAGGATTTCGC CGCAAAGCCTCTGGATCTGCACGAGCTGCTGATTGCCCATCCGCAAGCTA CGTTCTTCCTTCGGTTGCGCGGTGAGTCGCTGCGGGATGCGGGTATCTTG GACGGGGATATTGTGGTGGTGGACAGGGCGCTCAAGCCTGTGGGCGGCGA CCTGGTCGTTGCAGAGGTGGGACATGAGTTCACTTGCAAGTTCTTGCGTT ATCGGGGCCGTAGGCCGGTCCTTTCGGCGGCCAACCCCACGTATCCAGAT ATCGTTCCTGATGCAGAGCAGGGCATGCGGGTCTTTGGGGTTGTCACGGG AATAGTGCGATCG
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Coding sequence (CDS) from alignment at Contig_400:6333..6695-

>mRNA_18420 ID=mRNA_18420|Name=jgi.p|Trimin1|148362|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=363bp|location=Sequence derived from alignment at Contig_400:6333..6695- (Tribonema minus UTEX_B_3156 )
CTGGCTGGCGAGGTCCCGGCAGGCTTCCCTTCGCCTGCAGAGGATTTCGC
CGCAAAGCCTCTGGATCTGCACGAGCTGCTGATTGCCCATCCGCAAGCTA
CGTTCTTCCTTCGGTTGCGCGGTGAGTCGCTGCGGGATGCGGGTATCTTG
GACGGGGATATTGTGGTGGTGGACAGGGCGCTCAAGCCTGTGGGCGGCGA
CCTGGTCGTTGCAGAGGTGGGACATGAGTTCACTTGCAAGTTCTTGCGTT
ATCGGGGCCGTAGGCCGGTCCTTTCGGCGGCCAACCCCACGTATCCAGAT
ATCGTTCCTGATGCAGAGCAGGGCATGCGGGTCTTTGGGGTTGTCACGGG
AATAGTGCGATCG
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