mRNA_1834 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|163657 vs. uniprot
Match: A0A836CFT8_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFT8_9STRA) HSP 1 Score: 683 bits (1762), Expect = 2.400e-248 Identity = 338/338 (100.00%), Postives = 338/338 (100.00%), Query Frame = 1 Query: 1 MAATAAELFATMGTGINLGNTLDNAQNNRDTEVIARRLTALRQKGFQHVRIPVTWQPMGCSKCRVNSPSFVALVEGAVNAAIALGFTVILNAHHEAWLTSYDGSSGMNAAFADLWRKVALHFKSVPQDKLLFELLNEPQGTMCPCTPAAQQLTRTLNATGYNAVRAISPTRIVLIQPNNLGDAWAARATYRTPSLLPGQGKDKYLAITVHSYGPPKFALPKGSNAYFLDMADPEAAVCQHVKKLIAELLKLRLALGSTPVHLGEFGVGRENLADRDAPIVHLYYRTIAKAARDACIPPTVWDDGTGNDFEITNFDRNANCVDFTFDLAGDVLGTTATP 1014 MAATAAELFATMGTGINLGNTLDNAQNNRDTEVIARRLTALRQKGFQHVRIPVTWQPMGCSKCRVNSPSFVALVEGAVNAAIALGFTVILNAHHEAWLTSYDGSSGMNAAFADLWRKVALHFKSVPQDKLLFELLNEPQGTMCPCTPAAQQLTRTLNATGYNAVRAISPTRIVLIQPNNLGDAWAARATYRTPSLLPGQGKDKYLAITVHSYGPPKFALPKGSNAYFLDMADPEAAVCQHVKKLIAELLKLRLALGSTPVHLGEFGVGRENLADRDAPIVHLYYRTIAKAARDACIPPTVWDDGTGNDFEITNFDRNANCVDFTFDLAGDVLGTTATP Sbjct: 1 MAATAAELFATMGTGINLGNTLDNAQNNRDTEVIARRLTALRQKGFQHVRIPVTWQPMGCSKCRVNSPSFVALVEGAVNAAIALGFTVILNAHHEAWLTSYDGSSGMNAAFADLWRKVALHFKSVPQDKLLFELLNEPQGTMCPCTPAAQQLTRTLNATGYNAVRAISPTRIVLIQPNNLGDAWAARATYRTPSLLPGQGKDKYLAITVHSYGPPKFALPKGSNAYFLDMADPEAAVCQHVKKLIAELLKLRLALGSTPVHLGEFGVGRENLADRDAPIVHLYYRTIAKAARDACIPPTVWDDGTGNDFEITNFDRNANCVDFTFDLAGDVLGTTATP 338
BLAST of jgi.p|Trimin1|163657 vs. uniprot
Match: A0A836CL48_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL48_9STRA) HSP 1 Score: 617 bits (1590), Expect = 6.410e-222 Identity = 300/338 (88.76%), Postives = 320/338 (94.67%), Query Frame = 1 Query: 1 MAATAAELFATMGTGINLGNTLDNAQNNRDTEVIARRLTALRQKGFQHVRIPVTWQPMGCSKCRVNSPSFVALVEGAVNAAIALGFTVILNAHHEAWLTSYDGSSGMNAAFADLWRKVALHFKSVPQDKLLFELLNEPQGTMCPCTPAAQQLTRTLNATGYNAVRAISPTRIVLIQPNNLGDAWAARATYRTPSLLPGQGKDKYLAITVHSYGPPKFALPKGSNAYFLDMADPEAAVCQHVKKLIAELLKLRLALGSTPVHLGEFGVGRENLADRDAPIVHLYYRTIAKAARDACIPPTVWDDGTGNDFEITNFDRNANCVDFTFDLAGDVLGTTATP 1014 MA TAAELFAT+GTGINLGNTLD AQ++RDT VI RRLTALR+KGF+HVRIPVTWQPMGCS RVNSPSFVA+VEGAV AAI LGFTVILNAHHEAWLT+YD S MNAAFADLWRK++LHFKSVPQDKLLFELLNEPQGTMCPCTPAAQQLTRTLNATGYNAVRA+SPTRI+LIQPNNLGDAWAARATYRTPSLLPGQGKDKYLA++VHSYGPP+FALP GSNAYFL+MADPEAAVC+HVK LIAELLKLRLALGSTPVHLGEFG+GREN ADRDAPIVHLYYRTIAKAARDACIPPTVWDDGTGNDFEITNFDR+A V+FTFDLAG+VLGT TP Sbjct: 1 MAVTAAELFATLGTGINLGNTLDTAQHSRDTSVITRRLTALREKGFRHVRIPVTWQPMGCSTNRVNSPSFVAMVEGAVAAAIELGFTVILNAHHEAWLTAYDASPAMNAAFADLWRKISLHFKSVPQDKLLFELLNEPQGTMCPCTPAAQQLTRTLNATGYNAVRAVSPTRIILIQPNNLGDAWAARATYRTPSLLPGQGKDKYLAVSVHSYGPPQFALPSGSNAYFLNMADPEAAVCKHVKTLIAELLKLRLALGSTPVHLGEFGIGRENFADRDAPIVHLYYRTIAKAARDACIPPTVWDDGTGNDFEITNFDRDATFVNFTFDLAGEVLGTATTP 338
BLAST of jgi.p|Trimin1|163657 vs. uniprot
Match: A0A836CEX1_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEX1_9STRA) HSP 1 Score: 307 bits (787), Expect = 3.260e-99 Identity = 161/342 (47.08%), Postives = 220/342 (64.33%), Query Frame = 1 Query: 13 AAELFATMGTGINLGNTLDNAQNNRDTEVIARRLTALRQKGFQHVRIPVTWQPMGCSKCRVNSPSFVALVEGAVNAAIALGFTVILNAHHEAWLTSYDGSSGMNAAFADLWRKVALHFKSVPQDKLLFELLNEPQGTM--------CPCTPAAQQLTRTLNATGYNAVRAISPTRIVLIQPNNLGDAWAARATYRTPSLLPGQGKDKYLAITVHSYGPPKFALPKGSNAYFLDMADPEAAVCQHVKKLIAELLKLRLALGSTPVHLGEFGVGRENLADRDAPIVHLYYRTIAKAARDACIPPTVWDDGTGNDFEITNFDRNANCVDFTFDLAGDVLGTTATP 1014 AA+L ATM +G+NLGNTLD A ++ D V+ARRL A+R +G+ HVRIPV+W+P + CR++ P FV VE AV+ AI LG VI+NAHHE WLT YDGS M F +WR++A F+ PQ+KL+FE+LNEP GTM +P A LTR LNA GY +R++S R+VLIQPN++G + A + TP +LPG G+D+YLA+T+HSY P F P GS++ F EA + Q + L+ + + + PVH+GEFGVGR N RD+ +V YYR + ARDA IP WDDG DF IT F+R+A + F + ++ + L ++A+P Sbjct: 10 AAQLLATMKSGLNLGNTLDTATHSTDPAVMARRLDAIRAEGYGHVRIPVSWRPADFAVCRIDVPEFVDKVESAVDHAIGLGLVVIVNAHHEQWLTRYDGSKAMTDEFTSMWRRIATRFRDKPQNKLVFEVLNEPHGTMGGGGGFGGSSQSPEALALTRKLNAAGYTGIRSVSRRRVVLIQPNDMGSMYQAGKMWPTPEMLPGGGRDQYLAVTLHSYAPWAFVGPNGSDSAFASQKSLEADIAQRFESLLRWMQSVPV-----PVHIGEFGVGRVNRWLRDSDMVRAYYRCFSARARDAGIPAAAWDDG--GDFAITKFNRDATSIQFVYGIS-EALLSSASP 343
BLAST of jgi.p|Trimin1|163657 vs. uniprot
Match: A0A836CFX5_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFX5_9STRA) HSP 1 Score: 249 bits (637), Expect = 1.700e-77 Identity = 142/341 (41.64%), Postives = 196/341 (57.48%), Query Frame = 1 Query: 1 MAATAAELFATMGTGINLGNTLDNAQNNRDTEVIARRLTALRQKGFQHVRIPVTWQPMGCSKCRVNSPSFVALVEGAVNAAIALGFTVILNAHHEAWLTS-YDGSSGMNAAFADLWRKVALHFKSVPQDKLLFELLNEPQGTM----CPCTPAAQQLTRTLNATGYNAVRAISPTRIVLIQPNNLGDAWAARATYRTPSLLPGQGKDKYLAITVHSYGPPKFALPKGSNAYFLDMADPEAAVCQHVKKLIAELLKLRLALG--STPVHLGEFGVGRENLADRDAPIVHLYYRTIAKAARDACIPPTVWDDGTGNDFEITNFDRNANCVDFTFDLAGDVLGT 1002 MA TA ++ ++GTGINLG ++ Q++RD + I L+A++ KGF HVRIPVTW P C ++ P F+ L++ A + A+ LG TVI+NAHHE WL YDGS+ N F +LWR++A + + Q +++FE+LNEP T A LTR +N GY +RA+S TR+VL+QPNN G+ W+ Y + LPG G DKYL I H+Y F L G N ++ +AD A V K + ++K A+G + +HLGEFGVGR + RDA IV YY+ +K R+ I T W DG F +T D V + F LA VL T Sbjct: 1 MAKTATQVLTSIGTGINLGQVFESKQHSRDADKIRPWLSAVKSKGFGHVRIPVTWYPGTAHVCMLDDPEFMHLLDDATDFAVKLGLTVIINAHHEDWLFQHYDGSAAYNTKFKELWRRIAAKYNAYTQQQVIFEVLNEPTAKFGLGSAAATSACIDLTRKINCAGYAGIRAVSATRVVLVQPNNAGNIWSVPIVYPDKASLPGAGADKYLGIQFHTYDNYNFCLQGGRNDHYKSVADVSADVA----KRLTMIVKWHGAIGKDTVAIHLGEFGVGRLDQRQRDADIVRAYYKLTSKLFREKRICVTAWSDGGW--FALTLTDARQT-VTWPFGLADQVLKT 334
BLAST of jgi.p|Trimin1|163657 vs. uniprot
Match: A0A835ZM96_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZM96_9STRA) HSP 1 Score: 237 bits (604), Expect = 1.560e-72 Identity = 136/340 (40.00%), Postives = 191/340 (56.18%), Query Frame = 1 Query: 1 MAATAAELFATMGTGINLGNTLDNAQNNRDTEVIARRLTALRQKGFQHVRIPVTWQPMGCSKCRVNSPSFVALVEGAVNAAIALGFTVILNAHHEAWLTSY-DGSSGMNAAFADLWRKVALHFKSVPQDKLLFELLNEPQGTM----CPCTPAAQQLTRTLNATGYNAVRAISPTRIVLIQPNNLGDAWAARATYRTPSLLPGQGKDKYLAITVHSYGPPKFALPKGSNAYFLDMADPEAAVCQHVKKLIAELLKLRLALG---STPVHLGEFGVGRENLADRDAPIVHLYYRTIAKAARDACIPPTVWDDGTGNDFEITNFDRNANCVDFTFDLAGDVL 996 MA TA ++ + +G G+NLG ++ QN+R + + L A++ KGF HVRIPVTW P C ++ FV L++ A+ A+ +G T+++NAHHE WL Y DGS NA F LW ++A +++ Q +LLFE+LNEP G T +LTRT+N GY +R + TRIVL+QPN+ G+ WA Y T + LPG G DK + I H+Y F L G+NA++ + D A + K +A L+K +G + +HLGEFGVGR + RDA IV YYR +K RD I T W D F +T D + V + F LA +L Sbjct: 1 MAKTATQILSEIGIGLNLGQVFESKQNSRRPDQVRPWLAAVKAKGFGHVRIPVTWYPSDA--CVLDDSEFVHLLDDAIQYAVKIGLTLVINAHHEKWLFDYYDGSDVFNAKFKALWSRIAYKYRAYTQQQLLFEVLNEPDGKFGIGSASTTTGCIELTRTINRVGYEGIRYVDATRIVLVQPNDAGNIWAVPRVYPTKATLPGAGADKSVGIQCHTYDHYNFCLQGGTNAFYKSVDDISA----DIGKRVAMLMKWHTDIGGQDTVALHLGEFGVGRLDQRQRDADIVRAYYRITSKLFRDKSICCTAWSDNGW--FALTTMDASRR-VTWPFGLADQIL 331
BLAST of jgi.p|Trimin1|163657 vs. uniprot
Match: A0A835Z601_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z601_9STRA) HSP 1 Score: 234 bits (596), Expect = 2.700e-71 Identity = 131/337 (38.87%), Postives = 182/337 (54.01%), Query Frame = 1 Query: 13 AAELFATMGTGINLGNTLDNAQNNRDTEVIARRLTALRQKGFQHVRIPVTWQPMGCSKCRVNSPSFVALVEGAVNAAIALGFTVILNAHHEAWLTS-YDGSSGMNAAFADLWRKVALHFKSVPQDKLLFELLNEPQGTMCPCTPAAQQ-----LTRTLNATGYNAVRAISPTRIVLIQPNNLGDAWAARATYRTPSLLPGQGKDKYLAITVHSYGPPKFALPKGSNAYFLDMADPEAAVCQHVKKLIAELLKLRLALGSTPV---HLGEFGVGRENLADRDAPIVHLYYRTIAKAARDACIPPTVWDDGTGNDFEITNFDRNANCVDFTFDLAGDVL 996 A+++ +G G+NLG T ++ N+R + L +RQKGF HVRIPVTW P C++N F+ ++ ++ A+ +G VILN HHE W+ YDGS N F LW ++A +K PQ+KL+FE+LNEP G +A LTR +N G A+RA+ TRIVL+QPN +G+ W+ Y + LPG G DKYL + H+Y KF L GSN Y+ + + A ++K + + K + +G V HLGEFGVGR + RDA IV YYR + R I T W DG F + + D V F F LA V+ Sbjct: 6 ASQVLGDIGIGVNLGQTFESKMNSRQPAQVRPWLLGIRQKGFGHVRIPVTWYPGNSHACQLNDALFMQCLDNSIEYAVKIGLAVILNTHHEDWIIDGYDGSDLYNVKFKKLWTQIATRYKRYPQNKLIFEVLNEPSGKFGKPDESADSSECIALTRLINLVGLEAIRAVDSTRIVLVQPNAMGNVWSVPKVYPSKDTLPGSGADKYLGVQFHTYDHYKFCLQAGSNEYYKSLNELRA----DIQKRVEMIKKWHVTIGGNDVVALHLGEFGVGRLDQRQRDADIVKAYYRLTSLLYRQKGICVTAWSDGGW--FNVASLDSRGT-VQFPFGLADMVI 335
BLAST of jgi.p|Trimin1|163657 vs. uniprot
Match: A0A835Z688_9STRA (Family 5 glycoside hydrolase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z688_9STRA) HSP 1 Score: 181 bits (458), Expect = 1.000e-50 Identity = 115/298 (38.59%), Postives = 167/298 (56.04%), Query Frame = 1 Query: 34 MGTGINLGNTLDNAQNNRDTEV-IARRLTALRQKGFQHVRIPVTWQPMGCSKCRVNS-PSFVALVEGAVNAAIALGFTVILNAHHEAWLTS-YDGSSGMNAAFADLWRKVALHFKSVPQDKLLFELLNEPQGTMCPCTPAAQQLTRTLNATGYNAVRAISPTRIVLIQPNNLGDAWAARATYRTPSLLPGQGKDKYLAITVHSYGPPKFALPKGSNAYFLDMADPEAAVCQHVKKLIAELLKLRLALGSTPVHLGEFGVGR--ENLADR-DAPIVHLYYRTIAKAARDACIPPTVWDD 909 +G G NLGN D+ N+ D + + R ++ + KGF HVRIPVTW G KC++ S P FV + AV A++L VI++ HHE+WL +DGS+ + A F LW ++ F + D L+F++LNEP TR +N GY+A+RA++ TR +L N++G + A+A Y T + LPG GKD LA++VH+YGPP+FAL GSN F +A+ A++ K A+L K G + EFGVG ++ A R D + Y+RT + + P TVW D Sbjct: 9 LGVGFNLGNRFDSRTNSIDFDTSVKRAISDFKAKGFTHVRIPVTWIYKG--KCKLKSDPYFVQQLTKAVKYAVSLKLFVIVDTHHESWLKDHFDGSATLKATFEQLWTDISHLFADISDDALIFQVLNEPPSNFDIAK------TRLVNQWGYDAIRAVTTTRCILCMGNDMGSPFGAKAVYPTAADLPGAGKDARLALSVHTYGPPEFALQDGSNDVFATVAEVTASI----DKRFAQLKKWIARSGHVTMVWDEFGVGARDDDQARRGDLRVREFYHRTANLCSMEKW-PCTVWCD 293
BLAST of jgi.p|Trimin1|163657 vs. uniprot
Match: A0A4P6YDL0_9FLAO (Glycoside hydrolase family 5 protein n=1 Tax=Flavobacterium nackdongense TaxID=2547394 RepID=A0A4P6YDL0_9FLAO) HSP 1 Score: 177 bits (449), Expect = 4.880e-48 Identity = 115/325 (35.38%), Postives = 165/325 (50.77%), Query Frame = 1 Query: 10 TAAELFATMGTGINLGNTLDNAQNNRDTEVIARRLTALRQKGFQHVRIPVTWQPM---------GCSKCRVNSPSFVALVEGAVNAAIALGFTVILNAHHEAWLTSY-DGSSGMNAAFADLWRKVALHFKSVPQDKLLFELLNEPQGTMC------------PCTPAAQQLTRTLNATGYNAVRAIS---PTRIVLIQPNNLGDAWAARATYRTPSLLPGQGKDKYLAITVHSYGPPKFALPKGSNAYFLDMADPEAAVCQHVKKLIAELLKLRLALGSTPVHLGEFGVGRENLADRDAPIVHLYYRTIAKAARDACIPPTVWDD 909 TA ++ MG G NLGNT DN N I + G +HVRIPV+W G K N F+ L + A++ AI+ G V++N HHE WL Y DGS+ N F+ LW +A +FK +KL+F++LNEP+GTM P + A LTR +N GY+A+RA + TRI++++PN G+ Y T + LPG G DKYL I VH+Y P F G+++ + AA+ + + + L P++ GEFGVGR + A R+ +V+ YYRT+ + +VWDD Sbjct: 130 TAIDITKAMGPGFNLGNTFDNGANPTSITSIKSIIDIYTAAGMKHVRIPVSWMQSVSGSTLANTGTGKVDFNHSRFLEL-KAAIDYAISKGLYVVINTHHEHWLKDYYDGSATYNTKFSTLWSDIATYFKDY-SNKLIFDILNEPEGTMGQWGAEAGFSFPQPTSTTALNLTRQINKVGYDAIRATAGGNATRIIMVEPNGQGNQGMIEEVYPTKADLPGGGTDKYLVIQVHTYDPWAFCGETGADSAYPGATSIAAAINK---------VAVHSTLLGVPINYGEFGVGRTSAA-RNTSVVYEYYRTVKTTTLANNMSFSVWDD 442
BLAST of jgi.p|Trimin1|163657 vs. uniprot
Match: A0A1V3RMW6_9FLAO (Cellulase domain-containing protein n=1 Tax=Flavobacterium sp. A45 TaxID=1945862 RepID=A0A1V3RMW6_9FLAO) HSP 1 Score: 176 bits (447), Expect = 9.170e-48 Identity = 116/325 (35.69%), Postives = 166/325 (51.08%), Query Frame = 1 Query: 10 TAAELFATMGTGINLGNTLDNAQNNRDTEVIARRLTALRQKGFQHVRIPVTWQPM---------GCSKCRVNSPSFVALVEGAVNAAIALGFTVILNAHHEAWLTSY-DGSSGMNAAFADLWRKVALHFKSVPQDKLLFELLNEPQGTM------------CPCTPAAQQLTRTLNATGYNAVRAI---SPTRIVLIQPNNLGDAWAARATYRTPSLLPGQGKDKYLAITVHSYGPPKFALPKGSNAYFLDMADPEAAVCQHVKKLIAELLKLRLALGSTPVHLGEFGVGRENLADRDAPIVHLYYRTIAKAARDACIPPTVWDD 909 TAA++ MGTG NLGNT DN N I + G +HVRIPV+W K +P F+ L + A++ A++ V+LN HHE WL Y DGS+ N F+ +W +A +FKS KL+F++LNEP+GTM P + A LTR +N GY+A+RA + TRI++++PN G+ Y + + LPG G DKYLAI VH+Y P F G+++ + AAV + + AL ++ GEFGVGR + A R+ +V+ YY T+ K + +VWDD Sbjct: 128 TAADIIKAMGTGFNLGNTFDNGINATSITSIKSIIDLYAAAGMKHVRIPVSWAQSVSGNTLANTSTGKVDFTNPRFLEL-KAAIDYALSKDLYVVLNTHHEHWLKDYYDGSATYNNKFSAIWTDIATYFKSY-SSKLIFDVLNEPEGTMGQWGAEAGFTFPLPTSATAISLTRQINKVGYDAIRATGGGNTTRIIMVEPNGQGNQGMIEEVYPSKAELPGLGNDKYLAIQVHTYDPWAFCGQTGADSAYPGATSIAAAVTK---------VATHSALIGVAINYGEFGVGRTSAA-RNTSVVYEYYSTMRKTMLANNMSASVWDD 440
BLAST of jgi.p|Trimin1|163657 vs. uniprot
Match: UPI0019A94C7F (Glycoside hydrolase family 5 protein n=1 Tax=Flavobacterium sp. TaxID=239 RepID=UPI0019A94C7F) HSP 1 Score: 174 bits (442), Expect = 5.000e-47 Identity = 116/325 (35.69%), Postives = 166/325 (51.08%), Query Frame = 1 Query: 10 TAAELFATMGTGINLGNTLDNAQNNRDTEVIARRLTALRQKGFQHVRIPVTWQPMGCSKCRVNSPS---------FVALVEGAVNAAIALGFTVILNAHHEAWLTSY-DGSSGMNAAFADLWRKVALHFKSVPQDKLLFELLNEPQGTM------------CPCTPAAQQLTRTLNATGYNAVRAI---SPTRIVLIQPNNLGDAWAARATYRTPSLLPGQGKDKYLAITVHSYGPPKFALPKGSNAYFLDMADPEAAVCQHVKKLIAELLKLRLALGSTPVHLGEFGVGRENLADRDAPIVHLYYRTIAKAARDACIPPTVWDD 909 TAA++ MG G NLGNT DN N I + G +HVRIPV+W N+ + F+ L + A++ AI+ G V++N+HHE WL Y DGS+ N F+ LW +A ++KS +KL+F++LNEP+GTM P A TR +N GY+A+RA + TRI++I+PN G+ Y T + LPG G DKYL I VH+Y P F GS+A + +A+ + + AL P++ GEFGVGR + A R+ +V+ YYRT+ + +VWDD Sbjct: 128 TAADITKAMGPGFNLGNTFDNGGNPTSITSIKSIIDIYAAAGMKHVRIPVSWIQSVSGSTLANTTTGKVDFTHSRFLEL-KAAIDYAISKGLYVVINSHHEHWLKDYYDGSATFNNKFSALWTDIATYYKSY-SNKLIFDILNEPEGTMGQWGAEAGFSFPLPTNATAINFTRQINKVGYDAIRATGGGNTTRIIMIEPNGQGNQGMIEEVYPTKAELPGLGNDKYLVIQVHTYDPWGFCGETGSDAAYPGATSIASAINK---------VATHSALIGVPINYGEFGVGRLSAA-RNTSVVYEYYRTVKATTLANNMSFSVWDD 440 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163657 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_1834 ID=mRNA_1834|Name=jgi.p|Trimin1|163657|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1017bp|location=Sequence derived from alignment at Contig_26:267717..268733- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGCAGCGACAGCAGCAGAGCTCTTTGCCACGATGGGCACCGGCATCAAback to top protein sequence of jgi.p|Trimin1|163657 >Trimin1|163657|e_gw1.26.37.1 ID=Trimin1|163657|e_gw1.26.37.1|Name=jgi.p|Trimin1|163657|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=339bp MAATAAELFATMGTGINLGNTLDNAQNNRDTEVIARRLTALRQKGFQHVRback to top mRNA from alignment at Contig_26:267717..268733- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_1834 ID=mRNA_1834|Name=jgi.p|Trimin1|163657|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1017bp|location=Sequence derived from alignment at Contig_26:267717..268733- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_26:267717..268733- >mRNA_1834 ID=mRNA_1834|Name=jgi.p|Trimin1|163657|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1017bp|location=Sequence derived from alignment at Contig_26:267717..268733- (Tribonema minus UTEX_B_3156 )back to top |