mRNA_18323 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|128799
Unique NamemRNA_18323
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|128799 vs. uniprot
Match: A0A835Z559_9STRA (PDZ domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z559_9STRA)

HSP 1 Score: 129 bits (324), Expect = 4.080e-38
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 
Query:    1 SALHMSTFETKLTKPMGIVFEENEPQYGGVYVKELRADGAASKDGSLKPGDQLVGVDGKPVVG 189
            SALHMSTFETKLTKPMGIVFEENEPQYGGVYVKELRADGAASKDGSLKPGDQLVGVDGKPVVG
Sbjct:    1 SALHMSTFETKLTKPMGIVFEENEPQYGGVYVKELRADGAASKDGSLKPGDQLVGVDGKPVVG 63
[Close]
BLAST of jgi.p|Trimin1|128799 vs. uniprot
Match: A0A7S3Y628_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y628_HETAK)

HSP 1 Score: 86.3 bits (212), Expect = 1.410e-18
Identity = 38/63 (60.32%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:    1 SALHMSTFETKLTKPMGIVFEENEPQYGGVYVKELRADGAASKDGSLKPGDQLVGVDGKPVVG 189
            S + M   E KL+KPMGIVFEENEPQ+GG+Y+K + +DG+A+ DG+L+PGDQLV V G  V G
Sbjct:   79 SLMSMEFVEAKLSKPMGIVFEENEPQFGGIYIKSINSDGSAAADGALRPGDQLVAVQGASVAG 141
[Close]
BLAST of jgi.p|Trimin1|128799 vs. uniprot
Match: A0A6U5LP01_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A6U5LP01_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 3.420e-13
Identity = 30/52 (57.69%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:   34 LTKPMGIVFEENEPQYGGVYVKELRADGAASKDGSLKPGDQLVGVDGKPVVG 189
            L KPMGI+FEEN+ +YGG++V+ L+  G+A  +G+L+PGDQLVGVD   V G
Sbjct:   17 LEKPMGIIFEENDEEYGGIFVQSLKDGGSAQVEGTLQPGDQLVGVDTTKVSG 68
[Close]
BLAST of jgi.p|Trimin1|128799 vs. uniprot
Match: A0A6U1TN17_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A6U1TN17_TRICV)

HSP 1 Score: 69.7 bits (169), Expect = 4.590e-13
Identity = 32/52 (61.54%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:   34 LTKPMGIVFEENEPQYGGVYVKELRADGAASKDGSLKPGDQLVGVDGKPVVG 189
            LTKPMGIVFEEN+ +YGG++V EL+  GAA ++GS+KPGDQL+ V    V G
Sbjct:  105 LTKPMGIVFEENDEKYGGIFVFELKEGGAADQNGSVKPGDQLISVGTNKVSG 156
[Close]
BLAST of jgi.p|Trimin1|128799 vs. uniprot
Match: A0A448Z8P4_9STRA (PDZ domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z8P4_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 6.750e-13
Identity = 31/53 (58.49%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:   31 KLTKPMGIVFEENEPQYGGVYVKELRADGAASKDGSLKPGDQLVGVDGKPVVG 189
            +LTKPMGIVFEEN+ +YGG++V+ +  DGAA+KDG+++ GDQL+ V  K V G
Sbjct:  101 ELTKPMGIVFEENDSEYGGIFVQSVTEDGAAAKDGNVQAGDQLITVGTKNVSG 153
[Close]
BLAST of jgi.p|Trimin1|128799 vs. uniprot
Match: A0A7S2JZ66_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JZ66_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.730e-12
Identity = 32/52 (61.54%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   34 LTKPMGIVFEENEPQYGGVYVKELRADGAASKDGSLKPGDQLVGVDGKPVVG 189
            L KPMGIVFEEN+ + GG+Y  EL+  G A  +GS+KPGDQLV V+GK V G
Sbjct:  104 LQKPMGIVFEENDEKMGGIYAVELKEGGNAHTEGSIKPGDQLVAVNGKKVSG 155
[Close]
BLAST of jgi.p|Trimin1|128799 vs. uniprot
Match: B8BWU9_THAPS (PDZ domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BWU9_THAPS)

HSP 1 Score: 65.5 bits (158), Expect = 1.030e-11
Identity = 30/52 (57.69%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:   34 LTKPMGIVFEENEPQYGGVYVKELRADGAASKDGSLKPGDQLVGVDGKPVVG 189
            L KPMGIVFEEN+  YGG++  E+    +A+KDG++KPGDQLV V  K V G
Sbjct:   67 LPKPMGIVFEENDSSYGGIFALEISDGSSAAKDGTIKPGDQLVAVGEKKVSG 118
[Close]
BLAST of jgi.p|Trimin1|128799 vs. uniprot
Match: A0A7S2RSX8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RSX8_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.530e-11
Identity = 32/53 (60.38%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:   31 KLTKPMGIVFEENEPQYGGVYVKELRADGAASKDGSLKPGDQLVGVDGKPVVG 189
            +L+KPMGIVFEEN+P  GGV+V  L   GAA+ +GSL  GDQLV V G+ V+G
Sbjct:  141 ELSKPMGIVFEENDPSTGGVFVASLADGGAAASEGSLMVGDQLVAVSGENVLG 193
[Close]
BLAST of jgi.p|Trimin1|128799 vs. uniprot
Match: A0A6U3Y7I0_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3Y7I0_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.770e-11
Identity = 30/63 (47.62%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:    1 SALHMSTFETKLTKPMGIVFEENEPQYGGVYVKELRADGAASKDGSLKPGDQLVGVDGKPVVG 189
            SAL     E  L KPMGI+FEEN+P+ GG+Y+      GA    GSL+ GDQL+ +DG   +G
Sbjct:   11 SALDAEELEVTLQKPMGIIFEENDPRMGGIYINGFSEGGAGESLGSLQVGDQLLAIDGADAIG 73
[Close]
BLAST of jgi.p|Trimin1|128799 vs. uniprot
Match: A0A6T6DUS8_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A6T6DUS8_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 3.830e-11
Identity = 27/45 (60.00%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:   34 LTKPMGIVFEENEPQYGGVYVKELRADGAASKDGSLKPGDQLVGV 168
            L KPMGIVFEEN+ ++GG++++ ++ DGAA+ +GSLK GDQLV V
Sbjct:  104 LKKPMGIVFEENDAKFGGIFIQSIKEDGAAAANGSLKDGDQLVAV 148
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|128799 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z559_9STRA4.080e-38100.00PDZ domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A7S3Y628_HETAK1.410e-1860.32Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6U5LP01_9STRA3.420e-1357.69Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A6U1TN17_TRICV4.590e-1361.54Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A448Z8P4_9STRA6.750e-1358.49PDZ domain-containing protein n=1 Tax=Pseudo-nitzs... [more]
A0A7S2JZ66_9STRA1.730e-1261.54Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
B8BWU9_THAPS1.030e-1157.69PDZ domain-containing protein n=1 Tax=Thalassiosir... [more]
A0A7S2RSX8_9STRA1.530e-1160.38Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6U3Y7I0_9STRA2.770e-1147.62Peptidyl-prolyl cis-trans isomerase n=1 Tax=Dictyo... [more]
A0A6T6DUS8_9STRA3.830e-1160.00Hypothetical protein n=1 Tax=Craspedostauros austr... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_221contigContig_221:126439..126627 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|128799|gw1.221.1.1
DescriptionPDZ domain (Also known as DHR or GLGF)
COG categoryS
Max annot lvl2836|Bacillariophyta
EggNOG OGs2DUMT@1|root,2S6KH@2759|Eukaryota,2XG74@2836|Bacillariophyta
Evalue1.7e-12
Seed ortholog35128.Thaps3113
Hectar predicted targeting categoryother localisation
TranscriptId129121
TrackFilteredModels1
ProteinId128799
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|128799gene_18323Tribonema minus UTEX_B_3156 geneContig_221 126439..126627 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18323_1exon_18323_1Tribonema minus UTEX_B_3156 exonContig_221 126439..126627 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18323CDS_18323Tribonema minus UTEX_B_3156 CDSContig_221 126439..126627 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|128799Trimin1|128799|gw1.221.1.1Tribonema minus UTEX_B_3156 polypeptideContig_221 126439..126627 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18323 ID=mRNA_18323|Name=jgi.p|Trimin1|128799|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=189bp|location=Sequence derived from alignment at Contig_221:126439..126627+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGCGCATTACACATGAGCACTTTTGAGACGAAGCTCACAAAGCCCATGGG
CATCGTCTTCGAAGAAAACGAGCCTCAGTATGGCGGCGTATACGTGAAGG
AGCTGCGTGCGGATGGGGCAGCTAGCAAGGATGGGAGCCTCAAGCCTGGT
GATCAACTCGTCGGCGTTGATGGCAAACCTGTCGTGGGC
back to top

protein sequence of jgi.p|Trimin1|128799

>Trimin1|128799|gw1.221.1.1 ID=Trimin1|128799|gw1.221.1.1|Name=jgi.p|Trimin1|128799|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=63bp
SALHMSTFETKLTKPMGIVFEENEPQYGGVYVKELRADGAASKDGSLKPG
DQLVGVDGKPVVG
back to top

mRNA from alignment at Contig_221:126439..126627+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18323 ID=mRNA_18323|Name=jgi.p|Trimin1|128799|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=189bp|location=Sequence derived from alignment at Contig_221:126439..126627+ (Tribonema minus UTEX_B_3156 )
AGCGCATTACACATGAGCACTTTTGAGACGAAGCTCACAAAGCCCATGGG
CATCGTCTTCGAAGAAAACGAGCCTCAGTATGGCGGCGTATACGTGAAGG
AGCTGCGTGCGGATGGGGCAGCTAGCAAGGATGGGAGCCTCAAGCCTGGT
GATCAACTCGTCGGCGTTGATGGCAAACCTGTCGTGGGC
back to top

Coding sequence (CDS) from alignment at Contig_221:126439..126627+

>mRNA_18323 ID=mRNA_18323|Name=jgi.p|Trimin1|128799|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=189bp|location=Sequence derived from alignment at Contig_221:126439..126627+ (Tribonema minus UTEX_B_3156 )
AGCGCATTACACATGAGCACTTTTGAGACGAAGCTCACAAAGCCCATGGG
CATCGTCTTCGAAGAAAACGAGCCTCAGTATGGCGGCGTATACGTGAAGG
AGCTGCGTGCGGATGGGGCAGCTAGCAAGGATGGGAGCCTCAAGCCTGGT
GATCAACTCGTCGGCGTTGATGGCAAACCTGTCGTGGGC
back to top