mRNA_18299 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|134235
Unique NamemRNA_18299
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|134235 vs. uniprot
Match: A0A835YZZ2_9STRA (U-box domain-containing protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZZ2_9STRA)

HSP 1 Score: 140 bits (353), Expect = 1.880e-42
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1 
Query:    1 PAHFLCPIFLDWLVNPVITPSGTTYSQAELELWVRENGTDPIARSRLAMSEVIPNLAIATAVHYHR 198
            PAHFLCPIFLDWLVNPVITPSGTTYSQAELELWVRENGTDPIARSRLAMSEVIPNLAIATAVHYHR
Sbjct:    1 PAHFLCPIFLDWLVNPVITPSGTTYSQAELELWVRENGTDPIARSRLAMSEVIPNLAIATAVHYHR 66
[Close]
BLAST of jgi.p|Trimin1|134235 vs. uniprot
Match: A0A836CKT5_9STRA (U-box domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKT5_9STRA)

HSP 1 Score: 129 bits (323), Expect = 9.430e-38
Identity = 59/66 (89.39%), Postives = 61/66 (92.42%), Query Frame = 1 
Query:    1 PAHFLCPIFLDWLVNPVITPSGTTYSQAELELWVRENGTDPIARSRLAMSEVIPNLAIATAVHYHR 198
            PAHFLCP FLDWLVNP ITPSG TYS+ ELELWVRENGTDPIARSRL +SEVIPNLAIATAVHYHR
Sbjct:    1 PAHFLCPTFLDWLVNPAITPSGITYSRGELELWVRENGTDPIARSRLGLSEVIPNLAIATAVHYHR 66
[Close]
BLAST of jgi.p|Trimin1|134235 vs. uniprot
Match: A0A836C868_9STRA (U-box domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C868_9STRA)

HSP 1 Score: 119 bits (299), Expect = 7.730e-34
Identity = 56/66 (84.85%), Postives = 58/66 (87.88%), Query Frame = 1 
Query:    1 PAHFLCPIFLDWLVNPVITPSGTTYSQAELELWVRENGTDPIARSRLAMSEVIPNLAIATAVHYHR 198
            PAHFLCPI LDWLVNPV TPSG T  + ELELWV ENGTDPIARSRLA SEVIPNLA+ATAVHYHR
Sbjct:   21 PAHFLCPISLDWLVNPVTTPSGITSPRGELELWVSENGTDPIARSRLATSEVIPNLAVATAVHYHR 86
[Close]
BLAST of jgi.p|Trimin1|134235 vs. uniprot
Match: A0A835YWC4_9STRA (U-box domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWC4_9STRA)

HSP 1 Score: 112 bits (279), Expect = 3.620e-31
Identity = 55/65 (84.62%), Postives = 58/65 (89.23%), Query Frame = 1 
Query:    1 PAHFLCPIFLDWLVNPVITPSGTTYSQAELELWVRENGTDPIARSRLAMSEVIPNLAI--ATAVH 189
            PAH LCPI LDWLVNPVITPSG TYS+ EL+LWVRENGTDP+ARSRLAMSEVI NLAI  ATAVH
Sbjct:    1 PAHLLCPISLDWLVNPVITPSGITYSREELDLWVRENGTDPVARSRLAMSEVISNLAIMFATAVH 65
[Close]
BLAST of jgi.p|Trimin1|134235 vs. uniprot
Match: A0A835Z5B2_9STRA (U-box domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5B2_9STRA)

HSP 1 Score: 109 bits (273), Expect = 2.750e-30
Identity = 53/62 (85.48%), Postives = 55/62 (88.71%), Query Frame = 1 
Query:    1 PAHFLCPIFLDWLVNPVITPSGTTYSQAELELWVRENGTDPIARSRLAMSEVIPNLAIATAV 186
            PAHFL PI L WLVNPV+TPSG TYS+ ELELWVRENGTDPIAR RLAMSEV PNLAIATAV
Sbjct:    1 PAHFLRPISLAWLVNPVVTPSGITYSREELELWVRENGTDPIARGRLAMSEVFPNLAIATAV 62
[Close]
BLAST of jgi.p|Trimin1|134235 vs. uniprot
Match: A0A836CBI8_9STRA (U-box domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBI8_9STRA)

HSP 1 Score: 104 bits (259), Expect = 3.400e-28
Identity = 46/58 (79.31%), Postives = 52/58 (89.66%), Query Frame = 1 
Query:    1 PAHFLCPIFLDWLVNPVITPSGTTYSQAELELWVRENGTDPIARSRLAMSEVIPNLAI 174
            PAHF+CPI LDW VNPV+TPSG TYS+ ELELWV ENGTDPIARSRL +SEV+PN+AI
Sbjct:    1 PAHFVCPISLDWHVNPVVTPSGITYSRGELELWVSENGTDPIARSRLTLSEVVPNIAI 58
[Close]
BLAST of jgi.p|Trimin1|134235 vs. uniprot
Match: A0A835Z2F1_9STRA (U-box domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2F1_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 6.720e-24
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:    1 PAHFLCPIFLDWLVNPVITPSGTTYSQAELELWVRENGTDPIARSRL 141
            PAHFLCPI LDWLVNPVITPSG TYS+AELELWVRENGTDPIARS L
Sbjct:    1 PAHFLCPISLDWLVNPVITPSGITYSRAELELWVRENGTDPIARSCL 47
[Close]
BLAST of jgi.p|Trimin1|134235 vs. uniprot
Match: A0A7S4FZ85_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FZ85_9EUGL)

HSP 1 Score: 68.6 bits (166), Expect = 2.100e-12
Identity = 30/66 (45.45%), Postives = 40/66 (60.61%), Query Frame = 1 
Query:    1 PAHFLCPIFLDWLVNPVITPSGTTYSQAELELWVRENGTDPIARSRLAMSEVIPNLAIATAVHYHR 198
            PAH LCPI L  + +PVITPSG TY +  +E W+  +GTDP  R  L   ++IPN  +   V  H+
Sbjct:  163 PAHLLCPITLQVMTDPVITPSGETYERQAIEQWLETHGTDPQTRRPLTKEQLIPNRRLKETVEVHK 228
[Close]
BLAST of jgi.p|Trimin1|134235 vs. uniprot
Match: A0A2N1MYB8_9GLOM (RING-type E3 ubiquitin transferase n=2 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A2N1MYB8_9GLOM)

HSP 1 Score: 65.9 bits (159), Expect = 8.440e-12
Identity = 26/66 (39.39%), Postives = 44/66 (66.67%), Query Frame = 1 
Query:    1 PAHFLCPIFLDWLVNPVITPSGTTYSQAELELWVRENGTDPIARSRLAMSEVIPNLAIATAVHYHR 198
            P+ ++CPI L+W+ +PV+TPSG +Y +A LE W+R +  DP+ R  L + +V  N  +  A+ ++R
Sbjct:   95 PSQYMCPISLNWMEDPVVTPSGVSYDRALLEEWLRNDPHDPLTREVLTIDQVYANRNLKDAIEHYR 160
[Close]
BLAST of jgi.p|Trimin1|134235 vs. uniprot
Match: A0A7S1IXJ3_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IXJ3_9EUGL)

HSP 1 Score: 65.9 bits (159), Expect = 2.360e-11
Identity = 25/66 (37.88%), Postives = 44/66 (66.67%), Query Frame = 1 
Query:    1 PAHFLCPIFLDWLVNPVITPSGTTYSQAELELWVRENGTDPIARSRLAMSEVIPNLAIATAVHYHR 198
            P H++CPI ++ + +PVITPSG +Y ++ LE W+ E G++P+ R  L+ +++IPN  +   +   R
Sbjct:  165 PTHYICPITMEVMRDPVITPSGNSYERSALESWIMEKGSEPLTRESLSRTQLIPNRGLKETLEQWR 230
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|134235 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YZZ2_9STRA1.880e-42100.00U-box domain-containing protein (Fragment) n=2 Tax... [more]
A0A836CKT5_9STRA9.430e-3889.39U-box domain-containing protein n=1 Tax=Tribonema ... [more]
A0A836C868_9STRA7.730e-3484.85U-box domain-containing protein n=1 Tax=Tribonema ... [more]
A0A835YWC4_9STRA3.620e-3184.62U-box domain-containing protein (Fragment) n=1 Tax... [more]
A0A835Z5B2_9STRA2.750e-3085.48U-box domain-containing protein (Fragment) n=1 Tax... [more]
A0A836CBI8_9STRA3.400e-2879.31U-box domain-containing protein (Fragment) n=1 Tax... [more]
A0A835Z2F1_9STRA6.720e-2491.49U-box domain-containing protein (Fragment) n=1 Tax... [more]
A0A7S4FZ85_9EUGL2.100e-1245.45Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A2N1MYB8_9GLOM8.440e-1239.39RING-type E3 ubiquitin transferase n=2 Tax=Rhizoph... [more]
A0A7S1IXJ3_9EUGL2.360e-1137.88Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_262contigContig_262:100488..100685 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|134235|gw1.262.6.1
DescriptionProtein kinase domain
COG categoryT
Max annot lvl35493|Streptophyta
EggNOG OGsCOG0515@1|root,2QQ92@2759|Eukaryota,37M00@33090|Viridiplantae,3G7XU@35493|Streptophyta,3KTXA@4447|Liliopsida,3I4Q9@38820|Poales
Evalue4.65e-09
Seed ortholog38727.Pavir.Da02252.1.p
Hectar predicted targeting categoryother localisation
TranscriptId134557
TrackFilteredModels1
ProteinId134235
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|134235gene_18299Tribonema minus UTEX_B_3156 geneContig_262 100488..100685 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18299_1exon_18299_1Tribonema minus UTEX_B_3156 exonContig_262 100488..100685 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18299CDS_18299Tribonema minus UTEX_B_3156 CDSContig_262 100488..100685 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|134235Trimin1|134235|gw1.262.6.1Tribonema minus UTEX_B_3156 polypeptideContig_262 100488..100685 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18299 ID=mRNA_18299|Name=jgi.p|Trimin1|134235|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=198bp|location=Sequence derived from alignment at Contig_262:100488..100685- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CCGGCACATTTTCTATGCCCCATTTTCCTCGATTGGCTGGTGAACCCTGT
AATCACCCCAAGTGGCACCACATACTCACAGGCAGAACTTGAGCTTTGGG
TGCGCGAGAATGGCACGGATCCTATTGCTCGCAGCCGCCTTGCTATGAGC
GAGGTGATCCCTAATCTTGCTATTGCAACTGCAGTGCACTATCATCGT
back to top

protein sequence of jgi.p|Trimin1|134235

>Trimin1|134235|gw1.262.6.1 ID=Trimin1|134235|gw1.262.6.1|Name=jgi.p|Trimin1|134235|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=66bp
PAHFLCPIFLDWLVNPVITPSGTTYSQAELELWVRENGTDPIARSRLAMS
EVIPNLAIATAVHYHR
back to top

mRNA from alignment at Contig_262:100488..100685-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18299 ID=mRNA_18299|Name=jgi.p|Trimin1|134235|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=198bp|location=Sequence derived from alignment at Contig_262:100488..100685- (Tribonema minus UTEX_B_3156 )
CCGGCACATTTTCTATGCCCCATTTTCCTCGATTGGCTGGTGAACCCTGT
AATCACCCCAAGTGGCACCACATACTCACAGGCAGAACTTGAGCTTTGGG
TGCGCGAGAATGGCACGGATCCTATTGCTCGCAGCCGCCTTGCTATGAGC
GAGGTGATCCCTAATCTTGCTATTGCAACTGCAGTGCACTATCATCGT
back to top

Coding sequence (CDS) from alignment at Contig_262:100488..100685-

>mRNA_18299 ID=mRNA_18299|Name=jgi.p|Trimin1|134235|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=198bp|location=Sequence derived from alignment at Contig_262:100488..100685- (Tribonema minus UTEX_B_3156 )
CCGGCACATTTTCTATGCCCCATTTTCCTCGATTGGCTGGTGAACCCTGT
AATCACCCCAAGTGGCACCACATACTCACAGGCAGAACTTGAGCTTTGGG
TGCGCGAGAATGGCACGGATCCTATTGCTCGCAGCCGCCTTGCTATGAGC
GAGGTGATCCCTAATCTTGCTATTGCAACTGCAGTGCACTATCATCGT
back to top