mRNA_18136 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|150792 vs. uniprot
Match: A0A835Z926_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z926_9STRA) HSP 1 Score: 474 bits (1220), Expect = 2.440e-169 Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 1 Query: 1 SNGTVTLASGRRLDDGSVIRVLFAYTTPTRDRWGHSTIVSMIVGGVASANQALSNSGAGFKIVAAHIMHAQWSHDSSGHIVSLSALNYGEVPGIVAARKLYKADLVQMVIDNGEYCGYGNLMDTASSSFGKYAHSVIHGGCYAQLSHVHEIGHNLGARHDAADSTASTTWPYALGWRYCDDGKGAGPYFRTVMSYSCPGAARVPYFSSPNKFYQGLPTGNAGADNARVLRQ 693 SNGTVTLASGRRLDDGSVIRVLFAYTTPTRDRWGHSTIVSMIVGGVASANQALSNSGAGFKIVAAHIMHAQWSHDSSGHIVSLSALNYGEVPGIVAARKLYKADLVQMVIDNGEYCGYGNLMDTASSSFGKYAHSVIHGGCYAQLSHVHEIGHNLGARHDAADSTASTTWPYALGWRYCDDGKGAGPYFRTVMSYSCPGAARVPYFSSPNKFYQGLPTGNAGADNARVLRQ Sbjct: 1 SNGTVTLASGRRLDDGSVIRVLFAYTTPTRDRWGHSTIVSMIVGGVASANQALSNSGAGFKIVAAHIMHAQWSHDSSGHIVSLSALNYGEVPGIVAARKLYKADLVQMVIDNGEYCGYGNLMDTASSSFGKYAHSVIHGGCYAQLSHVHEIGHNLGARHDAADSTASTTWPYALGWRYCDDGKGAGPYFRTVMSYSCPGAARVPYFSSPNKFYQGLPTGNAGADNARVLRQ 231
BLAST of jgi.p|Trimin1|150792 vs. uniprot
Match: A0A836CH47_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH47_9STRA) HSP 1 Score: 341 bits (874), Expect = 4.180e-115 Identity = 163/230 (70.87%), Postives = 193/230 (83.91%), Query Frame = 1 Query: 4 NGTVTLASGRRLDDGSVIRVLFAYTTPTRDRWGHSTIVSMIVGGVASANQALSNSGAGFKIVAAHIMHAQWSHDSSGHIVSLSALNYGEVPGIVAARKLYKADLVQMVIDNGEYCGYGNLMDTASSSFGKYAHSVIHGGCYAQLSHVHEIGHNLGARHDAADSTASTTWPYALGWRYCDDGKGAGPYFRTVMSYSCPGAARVPYFSSPNKFYQGLPTGNAGADNARVLRQ 693 +G V L SGRRLDDGSVIRVLFAYTTPTRDRWG STI SMIVG +ASANQALSNSG GFKI AA IMH W++D+ GH+ +L+AL+ GE+PGI AARKLYKADLVQ+VIDN +YCG+G+LM + SSSF +YA+SV++GGC+AQ SH+HEIGHN+GARHD ++ AS TWPYA+G+RYC G+ PYFR+VMSYSC GA RVPYFSSP +YQG TG GADNARVLR+ Sbjct: 94 DGAVILPSGRRLDDGSVIRVLFAYTTPTRDRWGQSTIRSMIVGALASANQALSNSGVGFKIAAARIMHVNWNYDNEGHVAALNALSQGEMPGIAAARKLYKADLVQVVIDNAQYCGFGSLMQSPSSSFREYAYSVVYGGCFAQFSHIHEIGHNMGARHDVGNTDASATWPYAMGYRYCS-GEVDPPYFRSVMSYSCTGAMRVPYFSSPTVYYQGRQTGMQGADNARVLRE 322
BLAST of jgi.p|Trimin1|150792 vs. uniprot
Match: A0A836C7N3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7N3_9STRA) HSP 1 Score: 269 bits (688), Expect = 1.630e-83 Identity = 135/243 (55.56%), Postives = 172/243 (70.78%), Query Frame = 1 Query: 7 GTVTLASGRRLDDGSVIRVLFAYTTPTRDRWGHSTIVSMIVGGVASANQALSNSGAGFKIVAAHIMHAQWSHDSSGHIVSLSALNYGEVPGIVAARKLYKADLVQMVIDNGEYCG---------------YGNLMDTASSSFGKYAHSVIHGGCYAQLSHVHEIGHNLGARHDAADSTASTTWPYALGWRYCDDGKGAGPYFRTVMSYSCPGAARVPYFSSPNKFYQGLPTGNAGADNARVLR 690 G V + SGRRLDDGS++RVLFAYT +R RWG +T+ SMIVGGVASANQ LSNSG GFKI AA IM ++ G + +L+ L+ G V G+ AAR+ YKADLVQ+VI+ +YCG YGN+M + SS F +AHSV++ GCY+ SH+HE+GHN+GA+HDAA+S T W Y G+RYC G+ + P+FR+VMSY+C A RVPYFSSPN +Y+G TG AGADN RVL+ Sbjct: 364 GAVVMPSGRRLDDGSIVRVLFAYTPASRARWGAATLKSMIVGGVASANQVLSNSGLGFKIEAAAIMATTYTEPDGGFVAALNDLDDGNVTGVNAARETYKADLVQLVINTSDYCGSNCTNCSAVCAAYGRYGNIMTSTSSDFAPWAHSVVYNGCYSSYSHIHEMGHNMGAQHDAANSQDVTDWSYGEGYRYCS-GETSQPWFRSVMSYNCGAAPRVPYFSSPNVYYKGRATGTAGADNVRVLK 605
BLAST of jgi.p|Trimin1|150792 vs. uniprot
Match: A0A836CMI7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMI7_9STRA) HSP 1 Score: 260 bits (665), Expect = 1.150e-78 Identity = 128/229 (55.90%), Postives = 161/229 (70.31%), Query Frame = 1 Query: 7 GTVTLASGRRLDDGSVIRVLFAYTTPTRDRWGHSTIVSMIVGGVASANQALSNSGAGFKIVAAHIMHAQWSHDSSGHIVSLSALNYGEVPGIVAARKLYKADLVQMVIDNGEYCGYGNLMDTASSSFGKYAHSVIHGGCYAQLSHVHEIGHNLGARHDAADSTASTTWPYALGWRYCDDGKGAGPYFRTVMSYSCPGAARVPYFSSPNKFYQGLPTGNAGADNARVLRQ 693 G V + SGRRLDDGS +RVL+ Y+ RDRW TI S I GVA+ANQAL+NSG F++ AA IMH + D + H+ +L+ALN G + GI AR Y ADLVQMVI++ EYCGYGNL+ +ASSSF Y SV++ C SH+HEIGHN+G +H+A +S +T W Y +G+RYC+DG PY+R+VMSY+C GA RVPYFSSP+ YQG TG ADN RVL Q Sbjct: 229 GQVVMPSGRRLDDGSTVRVLWLYSNRVRDRWTDDTITSKIAAGVATANQALANSGVSFRVKAAAIMHVDY--DDTTHMEALAALNTGSIAGINTARDKYSADLVQMVIESSEYCGYGNLLYSASSSFAPYGFSVVYSDCIVSYSHIHEIGHNMGCQHNAENSGDATMWSYGVGYRYCNDGVSKSPYYRSVMSYACTGATRVPYFSSPDVEYQGRTTGLDTADNVRVLEQ 455
BLAST of jgi.p|Trimin1|150792 vs. uniprot
Match: A0A835YK21_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK21_9STRA) HSP 1 Score: 259 bits (661), Expect = 4.140e-77 Identity = 131/239 (54.81%), Postives = 164/239 (68.62%), Query Frame = 1 Query: 7 GTVTLASGRRLDDGSVIRVLFAYTTPTRDRWGHSTIVSMIVGGVASANQALSNSGAGFKIVAAHIMHAQWSHDSSGHIVSLSALNYGEVPG---------IVAARKLYKADLVQMVIDNGEYCGYGNLMDTASSSFGKYAHSVIHGGCYAQLSHVHEIGHNLGARHDAADSTASTTWPYALGWRYCDDGKGAGPYFRTVMSYSCPGAARVPYFSSPNKFYQGLPTGNAG-ADNARVLRQ 693 G V + SGRRLDDGSV+RVL+ YT RDRW +TI S IV GV SANQAL NS AGF++ AA I++ + D H+ SLS L+Y +P + R Y+ADLVQM+I+ EYCGYGNL+ +ASSSF Y +SV++ C A SH+HEIGHN+G +H+ +S +T WPY G+RYC+DG PYFRT+MSY+C GA RVPYFSSPN +YQG+ TG A ADN RVL Q Sbjct: 309 GAVLMPSGRRLDDGSVVRVLWLYTNRVRDRWTDATITSKIVSGVVSANQALINSNAGFQLEAAAIINIDY--DDVSHVQSLSDLSYSAIPXXXXXXXXXXVTFLRDFYRADLVQMIIEAPEYCGYGNLLSSASSSFASYGYSVVYSDCIASYSHIHEIGHNMGCQHNVENSGQTTVWPYGDGYRYCNDGVTQAPYFRTIMSYACTGATRVPYFSSPNIYYQGVATGTAATADNLRVLLQ 545
BLAST of jgi.p|Trimin1|150792 vs. uniprot
Match: A0A835YS29_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS29_9STRA) HSP 1 Score: 201 bits (511), Expect = 5.150e-56 Identity = 107/238 (44.96%), Postives = 146/238 (61.34%), Query Frame = 1 Query: 1 SNGTVTLASGRRLDDGSVIRVLFAYTTPTRDRWGHSTIVSMIVGGVASANQALSNSGAGFKIVAAHIMHAQWSHDSSGHIVSLSALNYGEVPGIVAARKLYKADLVQMVIDNGEYCGYGNLMDTASSSFGKYAHSVIHGGCYAQ--LSHVHEIGHNLGARHD----AADSTASTTWPYALGWRYCDDGKGAGPYFRTVMSYSCPG--AARVPYFSSPNKFYQGLPTGNAGADNARVLR 690 S+GTV + SGRRLDDGS++ +++ Y T T RWG S + SM+ GV SANQ L NSG GF+ ++M++ ++ + + ++ L G VPG AAR Y ADLVQM+ ++ YCG G LM + F KY HS + C+ L+H HEIGHN+G HD A+ A + WPY+ G+RYC + P FRTVM+YSC A+R PY+SSPN ++ G PTG DN R L+ Sbjct: 285 SDGTVIMPSGRRLDDGSIVTLMYVYGTYTTARWG-SQVPSMVAAGVTSANQVLVNSGIGFQFQLVNLMYSNYADNDM--LQGITDLANGVVPGAAAARNTYGADLVQMMTEDPNYCGIGWLMTGKDAWFEKYGHSAVLNDCFTPTGLTHAHEIGHNMGCHHDMGTDGANGAAGSLWPYSFGYRYC-----SAPNFRTVMAYSCTSGSASRAPYYSSPNVYFMGYPTGTIYEDNVRTLK 514
BLAST of jgi.p|Trimin1|150792 vs. uniprot
Match: A0A835YSD2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSD2_9STRA) HSP 1 Score: 199 bits (505), Expect = 4.770e-55 Identity = 107/251 (42.63%), Postives = 150/251 (59.76%), Query Frame = 1 Query: 1 SNGTVTLASGRRLDDGSVIRVLFAYTTPTRD---------------RWGHSTIVSMIVGGVASANQALSNSGAGFKIVAAHIMHAQWSHDSSGHIVSLSALNYGEVPGIVAARKLYKADLVQMVIDNGEYCGYGNLMDTASSSFGKYAHSVIHGGCYAQLSHVHEIGHNLGARHD----AADSTASTTWPYALGWRYCDDGKGAGPYFRTVMSYSCPG--AARVPYFSSPNKFYQGLPTGNAGADNARVLR 690 S+GTV + SGRRLDDGS++ +++ Y T T +WG S + SM GV SANQ L NSG GF+ ++M++ ++ ++ + + + G VPG+ AAR Y ADL+QM+ ++ YCG G LM S SF KY +S + C+ LSH+HEIGHN+G HD A++ A + WPY+ G+RYC + P FRTVM+Y+C A+R+PYFSSPN +Y G PTG DN R L+ Sbjct: 314 SDGTVIMPSGRRLDDGSIVTLMYIYGTYTNAXXXXXXXXXXXXXXAKWG-SQVPSMAAAGVTSANQVLVNSGVGFQFQLVNLMYSNYADNNMDQ--ATTDMLAGTVPGVAAARNTYGADLIQMMTEDTAYCGLGWLMTDKSPSFEKYGNSAVFNDCFMNLSHIHEIGHNMGCHHDIGTDGANAAAGSLWPYSFGYRYC-----SAPNFRTVMAYACTSGSASRMPYFSSPNVYYMGYPTGTDIEDNVRTLK 556
BLAST of jgi.p|Trimin1|150792 vs. uniprot
Match: A0A836C8G9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8G9_9STRA) HSP 1 Score: 189 bits (480), Expect = 4.060e-52 Identity = 102/234 (43.59%), Postives = 147/234 (62.82%), Query Frame = 1 Query: 13 VTLASGRRLDDGSVIRVLFAYTTPTRDRWGHSTIVSMIVGGVASANQALSNSGAGFKIVAAHIMHAQWSHDSSGHIVSLSALNYGEVPGIVAARKLYKADLVQMVIDNGEYCGYGNLMDTASSSFGKYAHSVIHGGCY--AQLSHVHEIGHNLGARHDA----ADSTASTTWPYALGWRYCDDGKGAGPYFRTVMSYSC-PGAA-RVPYFSSPNKFYQGLPTGNAGADNARVLR 690 V + SGRRLDDG+V+RV++ Y + RWG S I SM+ + SAN LSNS AG ++ A ++++ +++ + +L+A+ G VPG AAR Y ADL+QM+ ++ YCG G ++++A+++ KY +S + C + +H+HEIGHNLGA HD A S + WPY+ G+RYC P FRT+M+Y+C P + R+PYFSSP Y G PTG A DNAR LR Sbjct: 371 VVMPSGRRLDDGTVVRVMYIYGNASGSRWGGSQIYSMVAAAITSANLVLSNSNAGVQLELATLLYS--NYNDTDMYAALNAMVAGTVPGANAARDAYSADLMQMLTEDPRYCGLGWVLNSATNANSKYGNSAVQVLCLGSSNWAHIHEIGHNLGAHHDVSTDGASSATGSDWPYSFGYRYCST-----PNFRTIMAYTCNPNTSPRIPYFSSPLITYNGYPTGTATEDNARTLR 597
BLAST of jgi.p|Trimin1|150792 vs. uniprot
Match: A0A835YTT5_9STRA (Chitin-binding type-1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTT5_9STRA) HSP 1 Score: 171 bits (433), Expect = 2.920e-48 Identity = 97/235 (41.28%), Postives = 137/235 (58.30%), Query Frame = 1 Query: 7 GTVTLASGRRLDDGSVIRVLFAYTTPTRDRWGHSTIVSMIVGGV-ASANQALSNSGAGFKIVAAHIMHAQW-SHDSSGHIVSLSALNYGEVPGIVAARKLYKADLVQMVIDNGEYCGYGNLMDTASSSFGKYAHSVIHGGCY--AQLSHVHEIGHNLGARHDAADSTASTTWPYALGWRYCDDGKGAGPYFRTVMSY---SCPGAARVPYFSSPNKFYQGLPTGNAGADNARVLR 690 G+V + SGRRLD GSV+RVL+AYT G + V+ I+ G SANQ L+NSG F + AA+ + S S GH +L+A +P + + K D+VQ+VIDNG YCG G +M +A++ F A+S +H GC + L+H+HE+GHN G HD A +T +T WPY G+R C ++VM+Y +CPG VP FS+P + + G G+A DN RV + Sbjct: 60 GSVLMPSGRRLDAGSVVRVLWAYTPRVETLAGGAARVATIINGAFTSANQVLTNSGLPFILEAAYFKVSYTESTASDGHSGALTAAATNVIPSLWSVHDSGKYDIVQLVIDNGYYCGLGYVMSSATTGFAPSAYSTVHWGCMDTSNLAHIHEMGHNFGGLHDRASNTLTTAWPYGYGYRSCPSA--TAERVKSVMAYWSPNCPGQYNVPVFSTPTRAWSGYAMGDANTDNVRVFK 292
BLAST of jgi.p|Trimin1|150792 vs. uniprot
Match: A0A835YJ94_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ94_9STRA) HSP 1 Score: 169 bits (428), Expect = 3.920e-45 Identity = 98/231 (42.42%), Postives = 138/231 (59.74%), Query Frame = 1 Query: 1 SNGTVTLASGRRLDDGSVIRVLFAYTTPTRDRWGHSTIVSMIVGGVASANQALSNSGAGFKIVAAHIMHAQWSHDSSGHIVSLSALNYGEVPGIVAARKLYKADLVQMVIDNGEYCGYGNLMDTASSSFGKYAHSVIHGGCYAQLSHVHEIGHNLGARHDAA----DSTASTTWPYALGWRYCDDGKGAGPYFRTVMSYSCPGAARVPYFSSPNKFYQGLPTGNAGADNAR 681 + G V + SGRRLDDG+ +RVL+AY ++ S I SM+ GVASANQALSNS AGF+I A +M + ++ G I++ L G + + R+ ADLVQ + + +YCGYG ++ +++ K S + C+A S +HEIGHN+G HD+A D T+S YA G+R C G + PYFRTVM+Y+C A RV YFSSP+ Y G + A+NA+ Sbjct: 194 AEGAVMMPSGRRLDDGTKVRVLWAYNNVVKNMT-ESAIASMVAAGVASANQALSNSHAGFQIELAGLMRSTYNDVDQGSIIA--NLRDGVIADVKQKREEVAADLVQWISHDKKYCGYGFVLYNLTTADSKRGVSSVLFTCFAGYSQIHEIGHNMGCDHDSANVGGDHTSSQWASYAYGYRRCGGGSTSAPYFRTVMAYTCSRAPRVAYFSSPDVKYSSTAVGTSTANNAK 421 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|150792 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_18136 ID=mRNA_18136|Name=jgi.p|Trimin1|150792|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=693bp|location=Sequence derived from alignment at Contig_244:76675..77367- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. TCCAACGGCACTGTCACGCTGGCGAGTGGCCGCCGCCTGGACGACGGCAGback to top protein sequence of jgi.p|Trimin1|150792 >Trimin1|150792|gw1.244.9.1 ID=Trimin1|150792|gw1.244.9.1|Name=jgi.p|Trimin1|150792|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=231bp SNGTVTLASGRRLDDGSVIRVLFAYTTPTRDRWGHSTIVSMIVGGVASANback to top mRNA from alignment at Contig_244:76675..77367- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_18136 ID=mRNA_18136|Name=jgi.p|Trimin1|150792|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=693bp|location=Sequence derived from alignment at Contig_244:76675..77367- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_244:76675..77367- >mRNA_18136 ID=mRNA_18136|Name=jgi.p|Trimin1|150792|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=693bp|location=Sequence derived from alignment at Contig_244:76675..77367- (Tribonema minus UTEX_B_3156 )back to top |