mRNA_18007 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|182342
Unique NamemRNA_18007
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|182342 vs. uniprot
Match: A0A4P6HBB4_9HYPH (ATP-dependent Clp protease proteolytic subunit n=5 Tax=cellular organisms TaxID=131567 RepID=A0A4P6HBB4_9HYPH)

HSP 1 Score: 172 bits (436), Expect = 6.650e-53
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1 
Query:    1 MSGVANLVPMVIEQSSRGERAFDIFSRLLRERIIFVNGQIEDNMAAIICAQLLSLEADNPEKEVSLYINSPGGVVSSGFAIYDTMRYI 264
            MSGVANLVPMVIEQSSRGERAFDIFSRLLRERIIFVNGQIEDNMAAIICAQLLSLEADNPEKEVSLYINSPGGVVSSGFAIYDTMRYI
Sbjct:    1 MSGVANLVPMVIEQSSRGERAFDIFSRLLRERIIFVNGQIEDNMAAIICAQLLSLEADNPEKEVSLYINSPGGVVSSGFAIYDTMRYI 88
[Close]
BLAST of jgi.p|Trimin1|182342 vs. uniprot
Match: A0A0Q7WNC0_9HYPH (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Mesorhizobium sp. Root554 TaxID=1736557 RepID=A0A0Q7WNC0_9HYPH)

HSP 1 Score: 163 bits (413), Expect = 2.070e-49
Identity = 78/88 (88.64%), Postives = 87/88 (98.86%), Query Frame = 1 
Query:    1 MSGVANLVPMVIEQSSRGERAFDIFSRLLRERIIFVNGQIEDNMAAIICAQLLSLEADNPEKEVSLYINSPGGVVSSGFAIYDTMRYI 264
            MSG+ANLVPMVIEQSSRGERAFDIFSRLLRERIIF+NGQIED MAA++CAQ+LSLEADNP+KE+SLYINSPGGVV+SGFAIYDTMRY+
Sbjct:    1 MSGLANLVPMVIEQSSRGERAFDIFSRLLRERIIFINGQIEDGMAALVCAQILSLEADNPDKEISLYINSPGGVVTSGFAIYDTMRYV 88
[Close]
BLAST of jgi.p|Trimin1|182342 vs. uniprot
Match: UPI000FD3D898 (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Mesorhizobium sp. M4B.F.Ca.ET.019.03.1.1 TaxID=2496651 RepID=UPI000FD3D898)

HSP 1 Score: 159 bits (402), Expect = 4.410e-49
Identity = 76/88 (86.36%), Postives = 86/88 (97.73%), Query Frame = 1 
Query:    1 MSGVANLVPMVIEQSSRGERAFDIFSRLLRERIIFVNGQIEDNMAAIICAQLLSLEADNPEKEVSLYINSPGGVVSSGFAIYDTMRYI 264
            MSG+ANLVPMVIEQSSRGERAFDIFSRLLRERIIF+NG+I D M+A++CAQLLSLE+DNP+KE+SLYINSPGGVV+SGFAIYDTMRYI
Sbjct:    1 MSGLANLVPMVIEQSSRGERAFDIFSRLLRERIIFINGEINDGMSALVCAQLLSLESDNPDKEISLYINSPGGVVTSGFAIYDTMRYI 88
[Close]
BLAST of jgi.p|Trimin1|182342 vs. uniprot
Match: A0A1I7AVB0_9HYPH (ATP-dependent Clp protease proteolytic subunit n=3 Tax=Mesorhizobium TaxID=68287 RepID=A0A1I7AVB0_9HYPH)

HSP 1 Score: 157 bits (397), Expect = 5.720e-47
Identity = 74/88 (84.09%), Postives = 87/88 (98.86%), Query Frame = 1 
Query:    1 MSGVANLVPMVIEQSSRGERAFDIFSRLLRERIIFVNGQIEDNMAAIICAQLLSLEADNPEKEVSLYINSPGGVVSSGFAIYDTMRYI 264
            MSG++NLVPMVIEQSSRGERAFDIFSRLLRERIIF+NG I+DN++A++CAQLLSLE+DNP+KE++LYINSPGGVVSSGFAIYDTM+YI
Sbjct:    1 MSGISNLVPMVIEQSSRGERAFDIFSRLLRERIIFINGPIDDNVSALVCAQLLSLESDNPKKEIALYINSPGGVVSSGFAIYDTMQYI 88
[Close]
BLAST of jgi.p|Trimin1|182342 vs. uniprot
Match: A0A271LMC6_9HYPH (ATP-dependent Clp protease proteolytic subunit n=12 Tax=Mesorhizobium TaxID=68287 RepID=A0A271LMC6_9HYPH)

HSP 1 Score: 157 bits (396), Expect = 7.880e-47
Identity = 74/88 (84.09%), Postives = 86/88 (97.73%), Query Frame = 1 
Query:    1 MSGVANLVPMVIEQSSRGERAFDIFSRLLRERIIFVNGQIEDNMAAIICAQLLSLEADNPEKEVSLYINSPGGVVSSGFAIYDTMRYI 264
            MSG ANLVPMVIEQSSRGERAFDIFSRLLRERI+F+NG I+DN++A++CAQLLSLE+DNP+KE+SLYINSPGGVV+SGFAIYDTM+YI
Sbjct:    1 MSGFANLVPMVIEQSSRGERAFDIFSRLLRERIVFINGPIDDNVSALVCAQLLSLESDNPDKEISLYINSPGGVVTSGFAIYDTMQYI 88
[Close]
BLAST of jgi.p|Trimin1|182342 vs. uniprot
Match: X6HJB1_9HYPH (ATP-dependent Clp protease proteolytic subunit n=42 Tax=Mesorhizobium TaxID=68287 RepID=X6HJB1_9HYPH)

HSP 1 Score: 157 bits (396), Expect = 8.110e-47
Identity = 75/88 (85.23%), Postives = 85/88 (96.59%), Query Frame = 1 
Query:    1 MSGVANLVPMVIEQSSRGERAFDIFSRLLRERIIFVNGQIEDNMAAIICAQLLSLEADNPEKEVSLYINSPGGVVSSGFAIYDTMRYI 264
            MSG ANLVPMVIEQSSRGERAFDIFSRLLRERIIFVNG+I D M+A++CAQLLSLE+DNP+KE+SLYINSPGGVV+SGFAIYDTM+Y+
Sbjct:    1 MSGFANLVPMVIEQSSRGERAFDIFSRLLRERIIFVNGEINDGMSALVCAQLLSLESDNPDKEISLYINSPGGVVTSGFAIYDTMQYV 88
[Close]
BLAST of jgi.p|Trimin1|182342 vs. uniprot
Match: A0A1C2DI28_9HYPH (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Mesorhizobium hungaricum TaxID=1566387 RepID=A0A1C2DI28_9HYPH)

HSP 1 Score: 154 bits (390), Expect = 6.410e-46
Identity = 72/88 (81.82%), Postives = 84/88 (95.45%), Query Frame = 1 
Query:    1 MSGVANLVPMVIEQSSRGERAFDIFSRLLRERIIFVNGQIEDNMAAIICAQLLSLEADNPEKEVSLYINSPGGVVSSGFAIYDTMRYI 264
            MS +ANLVPMVIEQSSRGER FDIFSRLLRERIIFVNG++ D M+A++CAQLLSLE+DNP+KE+SLYINSPGGVV++GFAIYDTMRY+
Sbjct:    1 MSAIANLVPMVIEQSSRGERTFDIFSRLLRERIIFVNGEVNDTMSALVCAQLLSLESDNPDKEISLYINSPGGVVTAGFAIYDTMRYV 88
[Close]
BLAST of jgi.p|Trimin1|182342 vs. uniprot
Match: CLPP1_RHILO (ATP-dependent Clp protease proteolytic subunit 1 n=105 Tax=Bacteria TaxID=2 RepID=CLPP1_RHILO)

HSP 1 Score: 154 bits (389), Expect = 9.090e-46
Identity = 72/88 (81.82%), Postives = 87/88 (98.86%), Query Frame = 1 
Query:    1 MSGVANLVPMVIEQSSRGERAFDIFSRLLRERIIFVNGQIEDNMAAIICAQLLSLEADNPEKEVSLYINSPGGVVSSGFAIYDTMRYI 264
            MSG+A+LVPMVIEQSSRGERAFDIFSRLLRERIIF+NG+I D+++A++CAQLLSLE+DNP+KE+SLYINSPGGVV+SGFAIYDTM+Y+
Sbjct:    1 MSGLASLVPMVIEQSSRGERAFDIFSRLLRERIIFINGEINDDVSALVCAQLLSLESDNPDKEISLYINSPGGVVTSGFAIYDTMQYV 88
[Close]
BLAST of jgi.p|Trimin1|182342 vs. uniprot
Match: A0A316CUU5_PSESE (ATP-dependent Clp protease proteolytic subunit n=3 Tax=Phyllobacteriaceae TaxID=69277 RepID=A0A316CUU5_PSESE)

HSP 1 Score: 153 bits (386), Expect = 2.670e-45
Identity = 73/88 (82.95%), Postives = 85/88 (96.59%), Query Frame = 1 
Query:    1 MSGVANLVPMVIEQSSRGERAFDIFSRLLRERIIFVNGQIEDNMAAIICAQLLSLEADNPEKEVSLYINSPGGVVSSGFAIYDTMRYI 264
            MSG +NLVPMVIEQSSRGERAFDIFSRLLRERIIF+NG I+D+++A++CAQLLSLE+DNP+KE+SLYINSPGGVVSSG AIYDTM+YI
Sbjct:    1 MSGTSNLVPMVIEQSSRGERAFDIFSRLLRERIIFINGPIDDSVSALVCAQLLSLESDNPKKEISLYINSPGGVVSSGLAIYDTMQYI 88
[Close]
BLAST of jgi.p|Trimin1|182342 vs. uniprot
Match: A0A1M2YR33_9HYPH (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Rhizobiales bacterium 65-79 TaxID=1895815 RepID=A0A1M2YR33_9HYPH)

HSP 1 Score: 151 bits (381), Expect = 1.490e-44
Identity = 74/83 (89.16%), Postives = 80/83 (96.39%), Query Frame = 1 
Query:   16 NLVPMVIEQSSRGERAFDIFSRLLRERIIFVNGQIEDNMAAIICAQLLSLEADNPEKEVSLYINSPGGVVSSGFAIYDTMRYI 264
            NLVPMVIEQSSRGERAFDIFSRLLRERIIFVNG IED MAA++CAQLLSLE+DNP KEV+LYINSPGG+V+SGFAIYDTMRYI
Sbjct:    4 NLVPMVIEQSSRGERAFDIFSRLLRERIIFVNGPIEDGMAALVCAQLLSLESDNPNKEVALYINSPGGMVTSGFAIYDTMRYI 86
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|182342 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4P6HBB4_9HYPH6.650e-53100.00ATP-dependent Clp protease proteolytic subunit n=5... [more]
A0A0Q7WNC0_9HYPH2.070e-4988.64ATP-dependent Clp protease proteolytic subunit n=1... [more]
UPI000FD3D8984.410e-4986.36ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A1I7AVB0_9HYPH5.720e-4784.09ATP-dependent Clp protease proteolytic subunit n=3... [more]
A0A271LMC6_9HYPH7.880e-4784.09ATP-dependent Clp protease proteolytic subunit n=1... [more]
X6HJB1_9HYPH8.110e-4785.23ATP-dependent Clp protease proteolytic subunit n=4... [more]
A0A1C2DI28_9HYPH6.410e-4681.82ATP-dependent Clp protease proteolytic subunit n=1... [more]
CLPP1_RHILO9.090e-4681.82ATP-dependent Clp protease proteolytic subunit 1 n... [more]
A0A316CUU5_PSESE2.670e-4582.95ATP-dependent Clp protease proteolytic subunit n=3... [more]
A0A1M2YR33_9HYPH1.490e-4489.16ATP-dependent Clp protease proteolytic subunit n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_436contigContig_436:17539..17802 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|182342|e_gw1.436.22.1
BRITEko00000,ko00001,ko01000,ko01002
KEGG Pathwayko04112,ko04212,map04112,map04212
KEGG koko:K01358
EC3.4.21.92
Preferred nameclpP1
DescriptionCleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins
COG categoryOU
Max annot lvl28211|Alphaproteobacteria
EggNOG OGsCOG0740@1|root,COG0740@2|Bacteria,1MV46@1224|Proteobacteria,2U07E@28211|Alphaproteobacteria,43J99@69277|Phyllobacteriaceae
Evalue2.76e-49
Seed ortholog1297569.MESS2_460009
Hectar predicted targeting categoryother localisation
TranscriptId182664
TrackFilteredModels1
ProteinId182342
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|182342gene_18007Tribonema minus UTEX_B_3156 geneContig_436 17539..17802 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18007_1exon_18007_1Tribonema minus UTEX_B_3156 exonContig_436 17539..17802 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18007CDS_18007Tribonema minus UTEX_B_3156 CDSContig_436 17539..17802 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|182342Trimin1|182342|e_gw1.436.22.1Tribonema minus UTEX_B_3156 polypeptideContig_436 17539..17802 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18007 ID=mRNA_18007|Name=jgi.p|Trimin1|182342|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=264bp|location=Sequence derived from alignment at Contig_436:17539..17802+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGGTGTCGCCAATCTTGTGCCGATGGTGATCGAACAGTCGAGCCG
CGGCGAACGCGCTTTCGACATCTTCTCCCGACTGCTGCGTGAACGCATCA
TATTCGTCAACGGCCAGATCGAAGACAATATGGCCGCGATCATCTGCGCC
CAGTTGCTGTCGCTGGAGGCTGACAATCCGGAGAAGGAAGTGTCGCTCTA
CATCAACTCACCCGGCGGCGTGGTGAGTTCCGGCTTCGCCATCTATGACA
CGATGCGCTACATT
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protein sequence of jgi.p|Trimin1|182342

>Trimin1|182342|e_gw1.436.22.1 ID=Trimin1|182342|e_gw1.436.22.1|Name=jgi.p|Trimin1|182342|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=88bp
MSGVANLVPMVIEQSSRGERAFDIFSRLLRERIIFVNGQIEDNMAAIICA
QLLSLEADNPEKEVSLYINSPGGVVSSGFAIYDTMRYI
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mRNA from alignment at Contig_436:17539..17802+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18007 ID=mRNA_18007|Name=jgi.p|Trimin1|182342|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=264bp|location=Sequence derived from alignment at Contig_436:17539..17802+ (Tribonema minus UTEX_B_3156 )
ATGTCCGGTGTCGCCAATCTTGTGCCGATGGTGATCGAACAGTCGAGCCG
CGGCGAACGCGCTTTCGACATCTTCTCCCGACTGCTGCGTGAACGCATCA
TATTCGTCAACGGCCAGATCGAAGACAATATGGCCGCGATCATCTGCGCC
CAGTTGCTGTCGCTGGAGGCTGACAATCCGGAGAAGGAAGTGTCGCTCTA
CATCAACTCACCCGGCGGCGTGGTGAGTTCCGGCTTCGCCATCTATGACA
CGATGCGCTACATT
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Coding sequence (CDS) from alignment at Contig_436:17539..17802+

>mRNA_18007 ID=mRNA_18007|Name=jgi.p|Trimin1|182342|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=264bp|location=Sequence derived from alignment at Contig_436:17539..17802+ (Tribonema minus UTEX_B_3156 )
ATGTCCGGTGTCGCCAATCTTGTGCCGATGGTGATCGAACAGTCGAGCCG
CGGCGAACGCGCTTTCGACATCTTCTCCCGACTGCTGCGTGAACGCATCA
TATTCGTCAACGGCCAGATCGAAGACAATATGGCCGCGATCATCTGCGCC
CAGTTGCTGTCGCTGGAGGCTGACAATCCGGAGAAGGAAGTGTCGCTCTA
CATCAACTCACCCGGCGGCGTGGTGAGTTCCGGCTTCGCCATCTATGACA
CGATGCGCTACATT
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