mRNA_17937 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|354368
Unique NamemRNA_17937
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|354368 vs. uniprot
Match: A0A835Z343_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z343_9STRA)

HSP 1 Score: 767 bits (1981), Expect = 1.070e-278
Identity = 390/390 (100.00%), Postives = 390/390 (100.00%), Query Frame = 3
Query:  180 MYSNASAAYDGLKLPSRALAAVTGDKDHHAFLAGTCCLKEANELQLLHFSDDTNELTCAAVYSHPDEIWDLAPCPSDRNLVLSCHNNNATGRGGAPPRSSDAAFGVMLWRLPAAIPQSPSSSGNSSEPASQPIDKVASLGSAAKPACALLWEPGGQGNRAVTVAGGDLVRWELSGAAAREATTVRVTEGGAAAAAAAWDPHTRTSVAVAAGCGLRIADTRSGGAFTAVANAHRYACRDVDYSPYKPSCVVTCGEDRLLRFWDLRAPGQPLKSVLAHRNHWATRVAYNRFHDQLLATAGSDAAVCLWRVSSLCAAPGPLLLDGEGDXXXXXXXXXGDGAADVLARTYGGHEDSVCAVAWSARDAWVLTSLGHDGRVFAHHVPSAEKYKILL 1349
            MYSNASAAYDGLKLPSRALAAVTGDKDHHAFLAGTCCLKEANELQLLHFSDDTNELTCAAVYSHPDEIWDLAPCPSDRNLVLSCHNNNATGRGGAPPRSSDAAFGVMLWRLPAAIPQSPSSSGNSSEPASQPIDKVASLGSAAKPACALLWEPGGQGNRAVTVAGGDLVRWELSGAAAREATTVRVTEGGAAAAAAAWDPHTRTSVAVAAGCGLRIADTRSGGAFTAVANAHRYACRDVDYSPYKPSCVVTCGEDRLLRFWDLRAPGQPLKSVLAHRNHWATRVAYNRFHDQLLATAGSDAAVCLWRVSSLCAAPGPLLLDGEGDXXXXXXXXXGDGAADVLARTYGGHEDSVCAVAWSARDAWVLTSLGHDGRVFAHHVPSAEKYKILL
Sbjct:    1 MYSNASAAYDGLKLPSRALAAVTGDKDHHAFLAGTCCLKEANELQLLHFSDDTNELTCAAVYSHPDEIWDLAPCPSDRNLVLSCHNNNATGRGGAPPRSSDAAFGVMLWRLPAAIPQSPSSSGNSSEPASQPIDKVASLGSAAKPACALLWEPGGQGNRAVTVAGGDLVRWELSGAAAREATTVRVTEGGAAAAAAAWDPHTRTSVAVAAGCGLRIADTRSGGAFTAVANAHRYACRDVDYSPYKPSCVVTCGEDRLLRFWDLRAPGQPLKSVLAHRNHWATRVAYNRFHDQLLATAGSDAAVCLWRVSSLCAAPGPLLLDGEGDXXXXXXXXXGDGAADVLARTYGGHEDSVCAVAWSARDAWVLTSLGHDGRVFAHHVPSAEKYKILL 390          
BLAST of jgi.p|Trimin1|354368 vs. uniprot
Match: D7FQB0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQB0_ECTSI)

HSP 1 Score: 301 bits (772), Expect = 9.150e-95
Identity = 183/441 (41.50%), Postives = 243/441 (55.10%), Query Frame = 3
Query:  180 MYSNASAAYDGLKLPSRALAAVT-----------GDKDHHAFLAGTCCLKEANELQLLHFSDDTNELTCAAVYSHPDEIWDLAPCPSDRNLVLSCHNNNATGRGGAPPRSSDAAFGVMLWRLPAAIPQSP--------SSSGNSSEPASQPIDKVASLGSAAKPACALLWEPGGQGNRA--------VTVAGGDLVRWELSGAAAREATTVRVTEGGAA---------AAAAAWDPHTRTSVAVAAGCGLRIADTRSGGAFTAVANAHRYACRDVDYSPYKPSCVVTCGEDRLLRFWDLRAPGQPLKSVLAHRNHWATRVAYNRFHDQLLATAGSDAAVCLWRVSSLCAAPGPLLLDGEGDXXXXXXXXXGDG---------------AADVLARTYGGHEDSVCAVAWSARDAWVLTSLGHDGRVFAHHVPSAEKYKILL 1349
            M+S+AS+ Y+ LK P+R +AA+            G      F+ GTC L+E NEL +L F +++NEL C    SHP+EIW ++P P+D +L+++C N    G+      +    F V LWRLP   P              G+  EP  +P+ ++  L +AA    A+LW P G G+ +        VT+A G L RW L      EA +  V EGG           A AAAWDPH    VA AA C +   D R+  A T+VA AHR+A RD+DY+P KP C+ TCGEDRL++FWDLR P  P+K+++ H +HW   V YNRFHDQLL +  SD  V LWRVSS+ +AP   LL+ E D         G                 AAD+  RT+  HE+SV ++AWSA DAWV+ SL +DG V  +HVPS EKYKILL
Sbjct:    1 MFSSASSTYN-LKRPARCIAALAPQEESPEEEQQGGISSSRFVVGTCSLREPNELHVLGFHEESNELLCHQALSHPNEIWGVSPSPTDPSLLVTCSNGAKAGQN-----NGGVGFKVSLWRLPTPDPNDDPLHEHVMGGERGHPLEPIGEPLAELGGLKAAAT---AMLWSPPGGGSTSSRGGAGEFVTLADGLLKRWNLGDGRFEEAGSATVCEGGQGGGATAAGRGAPAAAWDPHRPVEVATAASCSVTCWDLRTMKATTSVAEAHRFAVRDLDYNPNKPFCLATCGEDRLIKFWDLRRPNAPVKTIVGH-DHWVNTVKYNRFHDQLLVSGSSDCMVHLWRVSSVSSAP---LLEPEDDDAGGLDGDAGXXXXXXXXXXXXGSKGEAADIRVRTFDEHEESVYSLAWSASDAWVMASLSYDGLVVLNHVPSTEKYKILL 428          
BLAST of jgi.p|Trimin1|354368 vs. uniprot
Match: A0A7S2HX18_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HX18_9STRA)

HSP 1 Score: 215 bits (547), Expect = 7.860e-62
Identity = 152/414 (36.71%), Postives = 219/414 (52.90%), Query Frame = 3
Query:  180 MYSNASAAYDGLKLPSRALAAVTGDKDHHAFLAGTCCLKEANELQLLHFSDDTNELTCAAVYSHPDEIWDLAPCPSDRNLVLSCHNNNATGRGGAPPRSSDAAFGVMLWRLPAAIPQSP-SSSGNSSEPASQPIDKV-------ASLGSAAKPACA-----LLWEPGGQGNRAVTVAGGDLVRWELSGAAAREATTVRVTEGGAAAA----AAAWDP----HTRTSVAVAAGCGLRIADTRSGGAFTA--VANAHRY-ACRDVDYSPYKPSCVVTCGEDRLLRFWDLRAPGQPLKSVLAHRNHWATRVAYNRFHDQLLATAGSDAAVCLWRVSSLCAAPGPLLLDGEGDXXXXXXXXXGDGAADVLARTYGGHEDSVCAVAWSARDAWVLTSLGHDGRVFAHHVPSAEKYKILL 1349
            M+S++S AY G KL SR L A   + + H FL G+  L+E NE+QL+ ++ ++   TC  V+ H  EIW ++P P D +L+++  +      G   P       G +LW++       P ++   S +  S P  +        A+L       C      +LWE          +   D   + +         +V+VT+  +A+     A A DP    HT +SV+   G  + + D R+        V  AH Y + RD+DY+P K   V T GEDRL++FWDLR+PG+P++ +LA  +HW   + +NRFHDQLL + G+D+ V LWRVSS+ +AP  L L+GEG+            A D   RT+  HEDSV AVAWSA DAWV  SL +DGRV  ++VPS EKYKILL
Sbjct:    1 MFSSSSCAYGG-KLQSRCLVAQEANSEQHRFLIGSTSLREENEVQLVDYNQESGMATCLHVFPHAHEIWHMSPSPRDASLLITSFH------GAQGP-------GAVLWKMNTTTEPDPLTNDAQSDDVTSAPDGRARSMSLANANLDEVTTFECVDGLPRILWEQKSASTNQERLVALDEHAFRVLD---MSEASVQVTDTSSASVGRIMAGALDPYGAGHTLSSVS---GVDISVWDCRTSITKPTINVEGAHEYGSIRDIDYNPNKRHVVATSGEDRLIKFWDLRSPGEPMR-ILAGHSHWVPCIKFNRFHDQLLVSGGTDSYVNLWRVSSISSAP-LLELEGEGNCAD---------AGDASIRTFDDHEDSVYAVAWSACDAWVFASLSYDGRVVFNNVPSTEKYKILL 383          
BLAST of jgi.p|Trimin1|354368 vs. uniprot
Match: A0A5D6Y0E6_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y0E6_9STRA)

HSP 1 Score: 212 bits (539), Expect = 1.100e-60
Identity = 146/405 (36.05%), Postives = 203/405 (50.12%), Query Frame = 3
Query:  180 MYSNASAAYD-GLKLPSRALAAVTGDKDHHAFLAGTCCLKEANELQLLHFSDDTNELTCAAVYSHPDEIWDLAPCPSDRNLVLSCHNNNATGRGGAPPRSSDAAFGVMLWRLPAAIPQSPSSSGNSSEPAS-----QPIDKVASLGSAAKPACALLWEPGGQGNRAVTVA--GGDLVRWELSGAAAREATT-------VRVTEGGAAAAAAAWDPHTRTSVAVAAGCGLRIADTRSGGAFTAVANAHRYACRDVDYSPYKPSCVVTCGEDRLLRFWDLRAPGQPLKSVLAHRNHWATRVAYNRFHDQLLATAGSDAAVCLWRVSSLCAAPGPLLLDGEGDXXXXXXXXXGDGAADVLARTYGGHEDSVCAVAWSARDAWVLTSLGHDGRVFAHHVPSAEKYKILL 1349
            M+S  + ++  G K+  R L A+ GDK++  FL GT  L++ N++ +L F    NE+T   VY+HP ++ +LAP P  ++LV++C             R  + A    LWR+        S+ G   E A       P+  +  L     P  ++ W  G +   A   +  G  L  W L      EAT        V +     A  A  WDPH    V+   G  ++  DTR+     AV +AH  A  D+DY+P KP C+ + G+D  L+FWDLR   QPL ++ AH  HW   V YNRFHDQL+ +A SD+ + LWRVSS+ +AP  + LD   +         G    D   R Y  HEDSV AVAW A D+W+  S+  DGR   +HVPS EKYKILL
Sbjct:    1 MFSAGACSFSVGSKV--RCLEALLGDKENARFLVGTTSLQQPNQIHVLDFDSAANEVTRTQVYAHPSQVQELAPSPFAKDLVVTCGK-----------RVGERAV-ATLWRM-----DDLSNGGGGEERAGGVESPTPLVVLTELPQQKLPVSSVAWNVGDESATATLASAHGTALRTWSLL-VGGSEATVQDKLELDVSLASSPTAVGALRWDPHHPNYVSYTLGGSVQTWDTRAKSVAFAVEDAHLQAALDIDYNPNKPFCLASGGDDGKLKFWDLRQARQPLLALAAHA-HWVWSVRYNRFHDQLVLSASSDSTLALWRVSSISSAP-IVELD---EQDFMSEAAAGADVVDTNVRRYAEHEDSVYAVAWGASDSWLFGSVSFDGRFCVNHVPSTEKYKILL 380          
BLAST of jgi.p|Trimin1|354368 vs. uniprot
Match: A0A7S4FB61_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4FB61_CHRCT)

HSP 1 Score: 211 bits (536), Expect = 2.960e-60
Identity = 147/412 (35.68%), Postives = 204/412 (49.51%), Query Frame = 3
Query:  168 SWEAMYSNASAAYDGLKLPSRALAAVTGDKDHHAFLAGTCCLKEANELQLLHFSDDTNELTCAAVYSHPDEIWDLAPCPSDRN--LVLSCHNNNATGRGGAPPRSSDAAFGVMLWRLPAAIPQSPS-SSGNSSEPASQPIDKVASLGSAA--KPACALLWE---PGGQGNRAVTVAGGDLVR-WELS-GAAAREATTVRVTEGGAAA--------AAAAWDPHTRTSVAVAAGCGLRIADTRSGGAFTAVANAHRYACRDVDYSPYKPSCVVTCGEDRLLRFWDLRAPGQPLKSVLAHRNHWATRVAYNRFHDQLLATAGSDAAVCLWRVSSLCAAPGPLLLDGEGDXXXXXXXXXGDGAADVLARTYGGHEDSVCAVAWSARDAWVLTSLGHDGRVFAHHVPSAEKYKILL 1349
            S  AM+  +  +    +  SR L+A+ GD DH+ F+  T  L+  N+L ++ F++DTNE+ C  VY HP E+W    CP+  N  LV++ H+N +  R             + LWR+     +  S  S     PA   + ++  LG         A+LW    P       VT    + VR W+LS GAAA  A      E G A+            WDPH   +        L   DTR+     +V +AH    R VD++P KP+  +T G+D  ++FWDLR P  PL S  AH +HW T   YNRFHDQL+ + G+D+ V LWR +S+ +AP  L LD E D          +  AD + + +  HE SV   AWSA DAW+  +L  DG    +HVP AEKYKILL
Sbjct:    1 SLPAMFELSGTSSYNTQRQSRCLSALEGDTDHNTFVLATLVLRGENQLHVIDFNEDTNEVWCTRVYEHPSEVWSCVTCPAPENQDLVITAHSNGSEQR-------------ISLWRMEGVAEREHSPESATPLPPAPSKMPELLQLGVPVPLSDTRAVLWNTVLP-----EQVTTVHRESVRVWQLSHGAAASSAA-----ESGHASPPDDERVFGCGRWDPHHAHAXXXXXXXXLITLDTRTMREALSVPSAHEQQVRCVDFNPNKPNVALTSGDDYRIKFWDLRKPSTPLLSEGAH-SHWVTSALYNRFHDQLVLSCGTDSLVKLWRAASVSSAPPSLELD-ETDAA--------EDEADGVVKVFEDHEQSVFGAAWSAADAWIFATLSLDGLAVINHVPPAEKYKILL 379          
BLAST of jgi.p|Trimin1|354368 vs. uniprot
Match: W7T6L5_9STRA (Protein tssc1 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T6L5_9STRA)

HSP 1 Score: 204 bits (518), Expect = 4.690e-57
Identity = 170/456 (37.28%), Postives = 224/456 (49.12%), Query Frame = 3
Query:  174 EAMYSNASAAYDGLKLPSRALAAVTGDKDHHAFLAGTCCLKE--ANELQLLHFSDDTNELTCAAVYSHPDEIWDLAPCPSDRNLVLSCHNNNATGRGGAPPRSSDAAFGVMLWRL-----PAAIPQSPS-------------------------------------------SSGNSSEPA-SQPIDKVA--SLGSAAKPACALLWEPGGQGNRAVTVAGGDLVR-WELSGAA-AREATT--VRVTEGGAAAAAAAWDPHTRTSVAVAAGCGLRIADTR----SGGAFTAVANA--HRYACRDVDYSPYKPSCVVTCGEDRLLRFWDLRAPGQ-PLKSVLAHRNHWATRVAYNRFHDQLLATAGSDAAVCLWRVSSLCAAPGPLLLDGEGDXXXXXXXXXGDGAADVLARTYGGHEDSVCAVAWSARDAWVLTSLGHDGRVFAHHVPSAEKYKILL 1349
            + MYS A   Y G K  SR LAAV GD +HH F  G   L++   NEL LL +S++TN+L  A+ YSHP EIW ++P P D +L  +    ++T RG  P           LWRL     P + P SPS                                           S   S EP  + P+D     S G   +  C +LW P  + N  V    G+  R + L G++ A+E +   + V E G    AAAWDPH    VA+A G G+R  D R    +G   T  ++   HR+  +DVD++  KP C VT GEDRL++FWD+R  GQ P+K +  H  HW   V YN  HDQLL +AG+D  V LWR+SS+ +AP   L + E           G  A DV       HE+SV AV WSA D ++  SL +DGRV  + VP +EKYKILL
Sbjct:    4 QVMYSGA-VVY-GAKNQSRCLAAVKGDHEHHRFFVGAAGLRDYPQNELLLLEYSEETNKLREASAYSHPGEIWHISPSPRDSSLCFT----SSTRRGADPL--------CTLWRLSLPEFPHSPPSSPSKDAGDMPRSTTRHSPTQQAFTTSFLAGEGAKKGTKAQHRLIKGSRDQSMEPLITLPVDNDPNKSRGGGGRVRC-VLWGPEQETNGKVLAVDGEKARLYALQGSSDAQEMSNFDLGVEEKGEVQ-AAAWDPHDPWKVAIAQGRGIRHLDMRMEQATGMTETEQSSGFCHRFGVKDVDFNHAKPYCFVTGGEDRLIKFWDIRRTGQGPVKRLAGHA-HWVWTVKYNPCHDQLLLSAGTDNLVNLWRISSISSAP---LWEPE----------EGPEAPDVRVLAIQDHEESVYAVDWSACDPFLFASLSYDGRVVVNAVPPSEKYKILL 429          
BLAST of jgi.p|Trimin1|354368 vs. uniprot
Match: A0A8J5X1B5_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X1B5_DIALT)

HSP 1 Score: 192 bits (487), Expect = 1.100e-52
Identity = 148/435 (34.02%), Postives = 206/435 (47.36%), Query Frame = 3
Query:  192 ASAAYDGLKLPSRALAAVTGDKDHHAFLAGTCCLKEANELQLLHFSDDTNELTCAAVYSHPDEIWDLAPCP--SDRNLVLSCHNNNATGRGGAPPRSSDAAFGVMLWRLPAA----IPQSPSSSGNSSEPASQPIDKVASLGSAAKPACA--LLWEPGGQGNRAVTVAGGDLVRWELSGAAAREATTVRVTEGGAAAA-----------AAAWDPHTRTSVAVAAGCG-LRIADTRSGGAFTAVANAHRYACRDVDYSPYKPSCVVTCGEDRLLRFWDLRAPGQPLKSVLAHRN-------------------------HWATRVAYNRFHDQLLATAGSDAAVCLWRVSSLCAAPG---PLLLD-GEGDXXXXXXXXXGDGAADVLARTYGGHEDSVCAVAWSARDAWVLTSLGHDGRVFAHHVPSAEKYKILL 1349
            A+ +Y+ LK  +R LAAV GD D   FL  T  L+  NEL ++ FS+DTNEL   AVY+ P E W LA CP  +  + +L+  N+N             AA    L  +P      +   P +      P  + +  V S GS A        LW P    + AVTV  G L  W L       + +   T   A  A           +A  D H   ++A+ +  G +   D R+  A  A+ NAHR   R + Y+P +P  +++ G+D  ++FWDLR       +  A                            HW T   +NRFHDQL+ TAG+DAAV LWRVSS+ +AP    PL  D G+G+          DG  D L R+   H++SV ++ WSA DAW+  SL  DG++ AH+VP+AEKY+ILL
Sbjct:    2 AAVSYE-LKSQARCLAAVEGDSDRSRFLVSTLNLRAPNELHVVEFSEDTNELLPIAVYAAPHETWGLAACPLPAHASKLLAVLNDNG------------AAHYAALTSVPVLDADDLGAPPRAGATPLAPLPETVRLVPSAGSGAAHGLLRHALWTPSEDASSAVTVQPGALCLWPLDRGDGTPSASASCTAAAAFGAPTPGGPDGCIESACCDLHHVHTIALGSAAGAISTVDLRTMKAAVALPNAHRSCVRVLAYNPNRPYALLSAGDDGAMKFWDLRRAKAITDAAAAQSAAXXXXXXXXXXXXXACMLRLGGVHLHWTTCALFNRFHDQLVLTAGTDAAVKLWRVSSVSSAPPSSEPLDADDGDGER---------DGDKDGLVRSLSEHDESVYSIVWSAADAWLFASLSLDGKLCAHYVPAAEKYRILL 414          
BLAST of jgi.p|Trimin1|354368 vs. uniprot
Match: A0A812DIY3_SEPPH (EIPR1 n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A0A812DIY3_SEPPH)

HSP 1 Score: 186 bits (471), Expect = 1.060e-50
Identity = 121/387 (31.27%), Postives = 195/387 (50.39%), Query Frame = 3
Query:  210 GLKLPSRALAAVTGDKDHHAFLAGTCCLKEANELQLLHFSDDTNELTCAAVYSHPDEIWDLAPCPSDRNLVLSCHNNNATGRGGAPPRSSDAAFGVMLWRLPAAIPQSPSSSGNSSEPASQPIDKVASLGSA--AKPACALLWEPGGQGNRAVTVAGGDLVRWELSGAAAR----EATTVRVTEGGAAAAAAAWDPHTRTS-VAVAAGCGLRIADTRSGGAFTAVANAHRYACRDVDYSPYKPSCVVTCGEDRLLRFWDLRAPGQPLKSVLAHRNHWATRVAYNRFHDQLLATAGSDAAVCLWRVSSLCAAPGPLLLDGEGDXXXXXXXXXGDGAADVLARTYGGHEDSVCAVAWSARDAWVLTSLGHDGRVFAHHVPSAEKYKILL 1349
            GL+ P+RAL A T + ++  FL GT  L+  N++  + F D+ N +          EIW ++    D++++ +C+N     R               +WRLP+    S +    +S    QP+  +  L  +   +  C +LW P G+ +  + +A   ++ W+L+ A+A      +T++ V +G     +  W+PH + + VA A    +R  D R+      + NAH    RD+D++P K   + +CG+D  ++FWD+R P  P K++  H +HW   V YN FHDQL+ ++ SD+ V L  V SL + P   L++ E +          +   D +  TY  HEDSV  V WS  D W+  SL +DGR+  + VP  EKYKILL
Sbjct:   10 GLEFPARALTAQTAETENIRFLVGTQSLRAENQIHHIDFDDENNVINKNVFLHREGEIWYISASTMDKDVLATCYNKTVDSR---------TEVQAAVWRLPSDFDNSMNEDHTNSH---QPLQLLCPLDFSDYGEIKC-VLWHPTGEASTLLGLADNHILLWDLNVASASAKIFSSTSLEV-KGQPKMTSGKWNPHHKCAQVATANDTAIRGWDIRTMQQVYVIENAHGQLVRDLDFNPNKQYYLASCGDDCKVKFWDVRNPSTPTKTLTDH-SHWVWSVRYNHFHDQLVLSSSSDSRVILNNVVSLSSEPFGHLVESEENSDSENNERVHEKPTDGVIATYEEHEDSVYQVDWSTADPWIFASLSYDGRLVINRVPRTEKYKILL 381          
BLAST of jgi.p|Trimin1|354368 vs. uniprot
Match: A0A2R5GQ58_9STRA (Nuclear distribution protein PAC1-1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GQ58_9STRA)

HSP 1 Score: 185 bits (470), Expect = 5.050e-50
Identity = 152/447 (34.00%), Postives = 208/447 (46.53%), Query Frame = 3
Query:  174 EAMYSNASAAYDGLKLPSRALAAVTGD-----KDHHAFLAGTCCLK------EANELQLLHFSDDTNELTCAAVYSHPDEIWDLAPCPSDRNLVLSCHNNNATGRGGAPPRSSDAAFGVMLWRLPAAIPQSPSSSGNSSEPASQPIDKVASLGSAAKPACALLWEP---------GGQ--------GNRAVTVAGGDLVRWELSGAAAREATTVRVTEGGAAA-------AAAAWDPHTRTSVAVAAGCGLRIADTRSGGAFTAVANAHRYACRDVDYSPYKPSCVVTCGEDRLLRFWDLRAPGQPLKSVLAHRNHWATRVAYNRFHDQLLATAGSDAAVCLWRVSSLCAAPGPLLLDGEG---------------DXXXXXXXXXGDGA-----ADVLARTYGGHEDSVCAVAWSARDAWVLTSLGHDGRVFAHHVPSAEKYKILL 1349
            EA+ +  SA  DG         A   D      D H FLAGT  L       +ANE+ L  + +  N+L   A   HP E+W LAP  + R+L+L+        +G             ML+R  A        +G+ +E A  P     +L         LLW P         GG+          R + V  G +  W++      E +  ++ + G  +        AA WDPH    V+V +G  +   D RS      +  AH+   RD+DY+P KP  +VT GEDR ++FWD+R P QPLK +LAH +HW   V YNRFHDQL+ +AG+D+ V LWR+SS+ +AP   L D +                D            A     AD L ++Y  H DSV +VAWSA +AWV  SL  DG++  +HVPSAEKYKILL
Sbjct:   21 EALPTATSATLDGGDSLGAGADAALDDFDEVHADKHLFLAGTQRLGAEEDTGDANEIVLFEYLEAGNKLETRARMKHPGEVWQLAPHATRRDLLLTIAGTGVERQG-------------MLFRFDA-------DAGSLNELARVPTTTDHTLRK-------LLWHPPETSAAGSLGGEDFEDDHELSERFLAVHDGLVRLWDV------EQSLTQMDDIGTCSLPSPRSLGAACWDPHHIHEVSVGSGDKVVGIDLRSMEITRRIDGAHKLGVRDLDYNPNKPYHLVTGGEDRRVKFWDVRKPDQPLKVILAH-DHWVGAVRYNRFHDQLVLSAGTDSHVSLWRLSSISSAPLLGLDDDDXXXXXXXXXXXXXXXXDTDAHSKGGASTAASTSETADGLVKSYEDHADSVYSVAWSAAEAWVFASLSIDGKLVVNHVPSAEKYKILL 433          
BLAST of jgi.p|Trimin1|354368 vs. uniprot
Match: UPI001425819D (EARP and GARP complex-interacting protein 1-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI001425819D)

HSP 1 Score: 183 bits (464), Expect = 1.280e-49
Identity = 133/404 (32.92%), Postives = 204/404 (50.50%), Query Frame = 3
Query:  180 MYSNASAAYDGLKLPSRALAAVTGDKDHHAFLAGTCCLKEANELQLLHFSDDTNELTCAAVYSHPD-EIWDLAPCPSDRNLVLSCHN---NNATGRGGAPPRSSDAAFGVMLWRLPAAIPQSPSS-SGNSSEPASQP-IDKVASLGSA--AKPACALLWEPGGQGNRAVTVAGGDLVRWELSGAAAR----EATTVRVTEGGAAAAAAAWDPH-TRTSVAVAAGCGLRIADTRSGGAFTAVANAHRYACRDVDYSPYKPSCVVTCGEDRLLRFWDLRAPGQPLKSVLAHRNHWATRVAYNRFHDQLLATAGSDAAVCLWRVSSLCAAP-GPLLLDGEGDXXXXXXXXXGDGAADVLARTYGGHEDSVCAVAWSARDAWVLTSLGHDGRVFAHHVPSAEKYKILL 1349
            M  +A   Y GL+  +RAL A   + D   FL GT  LK  N++ LL F ++ N+L    VY H D EIW +   P+D+N++ +C+N   +N T R               LWR+P     S     G+    +S P ++ + +L SA      C + WEP   G++ +T++  ++++W+   ++++     + T+ V +G     + +W+PH     +A A    +R  D R+      + NAH    RDVD++P K   + +CG+D  ++FWD R     +K++  H +HW   V YN FHDQL+ T+ SD+ V L  VSS+ + P G    D +            +   D +  TY  HEDSV A  WS  D W+  SL  DGR+  + VP AEKYKILL
Sbjct:    1 MEDDAPVIY-GLEFQARALTAQVAESDAIRFLVGTQSLKFDNQVHLLDFDEENNQLN-KTVYLHKDGEIWHITSSPADKNILATCYNKTIDNKTERL------------TSLWRIPTESDLSEHGVEGHDDTTSSAPSLELLCNLESANFGNIVCTM-WEPQEDGSKMLTLSENNILQWDFQASSSQARISNSATLEV-KGHPKFTSGSWNPHHNNIQIATANDTTIRGWDLRTMQEVYTIENAHSQLVRDVDFNPNKQYYLASCGDDCKVQFWDTRNTSASVKTLKDH-SHWVWSVRYNHFHDQLVLTSSSDSRVILNNVSSISSEPYGHREEDDDDSDIEDSDRKPLEPVQDEMITTYEEHEDSVYAAEWSTADPWLFASLSFDGRLVINRVPRAEKYKILL 387          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354368 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z343_9STRA1.070e-278100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FQB0_ECTSI9.150e-9541.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2HX18_9STRA7.860e-6236.71Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A5D6Y0E6_9STRA1.100e-6036.05Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A7S4FB61_CHRCT2.960e-6035.68Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
W7T6L5_9STRA4.690e-5737.28Protein tssc1 n=2 Tax=Nannochloropsis gaditana Tax... [more]
A0A8J5X1B5_DIALT1.100e-5234.02Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A812DIY3_SEPPH1.060e-5031.27EIPR1 n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A... [more]
A0A2R5GQ58_9STRA5.050e-5034.00Nuclear distribution protein PAC1-1 n=1 Tax=Hondae... [more]
UPI001425819D1.280e-4932.92EARP and GARP complex-interacting protein 1-like n... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_235contigContig_235:27306..29401 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|354368|estExt_Genemark1.C_Ctg_2350005
GOsGO:0000151,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009787,GO:0009788,GO:0009966,GO:0009968,GO:0009987,GO:0010646,GO:0010648,GO:0016567,GO:0019538,GO:0023051,GO:0023057,GO:0031461,GO:0032386,GO:0032388,GO:0032446,GO:0032879,GO:0032991,GO:0036211,GO:0040012,GO:0040017,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0046662,GO:0048518,GO:0048519,GO:0048520,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050795,GO:0051049,GO:0051050,GO:0051239,GO:0051240,GO:0060341,GO:0065007,GO:0070647,GO:0071704,GO:0080008,GO:0090325,GO:0090326,GO:1901046,GO:1901419,GO:1901420,GO:1901564,GO:1902494,GO:1903649,GO:1903651,GO:1904809,GO:1904811,GO:1905957,GO:1905958,GO:1990234,GO:2000241,GO:2000243
Preferred nameTSSC1
Descriptionpositive regulation of dense core granule transport
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG1007@1|root,KOG1007@2759|Eukaryota
Evalue1.56e-95
Seed ortholog2880.D7FQB0
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-01_006800.1
TranscriptId354690
TrackFilteredModels1
ProteinId354368
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354368gene_17937Tribonema minus UTEX_B_3156 geneContig_235 27306..29401 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17937_1exon_17937_1Tribonema minus UTEX_B_3156 exonContig_235 27306..28251 +
exon_17937_2exon_17937_2Tribonema minus UTEX_B_3156 exonContig_235 28954..29401 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_17937UTR5_17937Tribonema minus UTEX_B_3156 five_prime_UTRContig_235 27306..27484 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17937CDS_17937Tribonema minus UTEX_B_3156 CDSContig_235 27485..28251 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_17937UTR3_17937Tribonema minus UTEX_B_3156 three_prime_UTRContig_235 29360..29401 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354368Trimin1|354368|estExt_Genemark1.C_Ctg_2350005Tribonema minus UTEX_B_3156 polypeptideContig_235 27485..29359 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17937 ID=mRNA_17937|Name=jgi.p|Trimin1|354368|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1394bp|location=Sequence derived from alignment at Contig_235:27306..29401+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATTCGATTGCAGCTTCGTATTGCACTCATGTTAGCCTAGCGATGTGCGGA
CAGCACGCAGGAGGCACTGCGGCTCCCCAGCACTCCAGTCAAGAAGCAAC
AGATCCTTCAAGGCCTGGCCCACTGCAGGAACCAGGCATACCACAGCAGG
TTCCATAGCCTGAGGCCTCCTGGGAAGCCATGTACAGCAATGCCTCCGCT
GCCTACGACGGCCTCAAGCTGCCCAGCAGGGCTCTGGCAGCAGTCACAGG
CGACAAGGATCACCACGCCTTCCTGGCAGGCACCTGTTGCCTCAAGGAGG
CCAATGAGCTGCAGCTGCTGCACTTCTCGGACGACACCAACGAGCTGACG
TGCGCCGCCGTCTACTCCCACCCCGACGAGATCTGGGACCTGGCGCCCTG
CCCCTCCGATCGCAACCTGGTCCTGTCCTGCCATAACAACAATGCGACAG
GGCGAGGCGGAGCCCCCCCGCGATCCTCCGATGCAGCCTTTGGCGTCATG
CTGTGGAGACTTCCCGCCGCGATCCCCCAATCGCCAAGCAGCAGCGGCAA
CAGCAGCGAACCGGCGTCGCAGCCGATAGACAAGGTGGCGAGCCTGGGCA
GCGCCGCCAAGCCGGCGTGCGCGCTGCTCTGGGAGCCGGGCGGGCAGGGC
AACAGGGCGGTGACGGTGGCGGGCGGCGATCTGGTACGGTGGGAGCTGAG
CGGCGCCGCGGCGCGCGAGGCGACGACGGTGAGGGTCACCGAGGGCGGCG
CTGCCGCCGCTGCGGCGGCGTGGGACCCGCACACGCGCACGAGCGTCGCC
GTCGCGGCGGGCTGCGGCTTGCGCATCGCAGACACGCGCAGCGGCGGCGC
GTTCACGGCCGTCGCGAACGCGCACCGCTACGCGTGCCGCGACGTCGACT
ACTCGCCGTACAAGCCGTCGTGCGTCGTCACGTGCGGCGAGGACAGGCTC
CTGCGCTTCTGGGACCTGCGCGCCCCCGGGCAGCCCCTCAAGAGCGTCCT
CGCGCACCGCAACCACTGGGCGACGCGCGTCGCGTACAACCGCTTCCACG
ACCAGCTGCTGGCGACGGCGGGCAGCGATGCGGCCGTGTGCCTGTGGCGC
GTCTCGAGCCTGTGCGCGGCGCCGGGGCCGCTGCTGCTGGACGGCGAGGG
GGACGGGGGGGGGGGCGGGGGGGGGGAAGGGGGGGATGGGGCTGCGGACG
TGCTCGCGCGCACGTACGGCGGGCACGAGGACAGCGTGTGCGCAGTGGCG
TGGAGCGCGCGCGACGCGTGGGTGCTCACGTCGCTGGGGCACGACGGGCG
CGTGTTTGCGCACCACGTGCCGTCCGCGGAGAAGTACAAGATTTTGCTGT
GATAAGTAGCGGGGGGGGGAGCTCCGTGGAGAGCGCTCTGCCGG
back to top

protein sequence of jgi.p|Trimin1|354368

>Trimin1|354368|estExt_Genemark1.C_Ctg_2350005 ID=Trimin1|354368|estExt_Genemark1.C_Ctg_2350005|Name=jgi.p|Trimin1|354368|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=391bp
MYSNASAAYDGLKLPSRALAAVTGDKDHHAFLAGTCCLKEANELQLLHFS
DDTNELTCAAVYSHPDEIWDLAPCPSDRNLVLSCHNNNATGRGGAPPRSS
DAAFGVMLWRLPAAIPQSPSSSGNSSEPASQPIDKVASLGSAAKPACALL
WEPGGQGNRAVTVAGGDLVRWELSGAAAREATTVRVTEGGAAAAAAAWDP
HTRTSVAVAAGCGLRIADTRSGGAFTAVANAHRYACRDVDYSPYKPSCVV
TCGEDRLLRFWDLRAPGQPLKSVLAHRNHWATRVAYNRFHDQLLATAGSD
AAVCLWRVSSLCAAPGPLLLDGEGDGGGGGGGEGGDGAADVLARTYGGHE
DSVCAVAWSARDAWVLTSLGHDGRVFAHHVPSAEKYKILL*
back to top

mRNA from alignment at Contig_235:27306..29401+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17937 ID=mRNA_17937|Name=jgi.p|Trimin1|354368|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2096bp|location=Sequence derived from alignment at Contig_235:27306..29401+ (Tribonema minus UTEX_B_3156 )
ATTCGATTGCAGCTTCGTATTGCACTCATGTTAGCCTAGCGATGTGCGGA CAGCACGCAGGAGGCACTGCGGCTCCCCAGCACTCCAGTCAAGAAGCAAC AGATCCTTCAAGGCCTGGCCCACTGCAGGAACCAGGCATACCACAGCAGG TTCCATAGCCTGAGGCCTCCTGGGAAGCCATGTACAGCAATGCCTCCGCT GCCTACGACGGCCTCAAGCTGCCCAGCAGGGCTCTGGCAGCAGTCACAGG CGACAAGGATCACCACGCCTTCCTGGCAGGCACCTGTTGCCTCAAGGAGG CCAATGAGCTGCAGCTGCTGCACTTCTCGGACGACACCAACGAGCTGACG TGCGCCGCCGTCTACTCCCACCCCGACGAGATCTGGGACCTGGCGCCCTG CCCCTCCGATCGCAACCTGGTCCTGTCCTGCCATAACAACAATGCGACAG GGCGAGGCGGAGCCCCCCCGCGATCCTCCGATGCAGCCTTTGGCGTCATG CTGTGGAGACTTCCCGCCGCGATCCCCCAATCGCCAAGCAGCAGCGGCAA CAGCAGCGAACCGGCGTCGCAGCCGATAGACAAGGTGGCGAGCCTGGGCA GCGCCGCCAAGCCGGCGTGCGCGCTGCTCTGGGAGCCGGGCGGGCAGGGC AACAGGGCGGTGACGGTGGCGGGCGGCGATCTGGTACGGTGGGAGCTGAG CGGCGCCGCGGCGCGCGAGGCGACGACGGTGAGGGTCACCGAGGGCGGCG CTGCCGCCGCTGCGGCGGCGTGGGACCCGCACACGCGCACGAGCGTCGCC GTCGCGGCGGGCTGCGGCTTGCGCATCGCAGACACGCGCAGCGGCGGCGC GTTCACGGCCGTCGCGAACGCGCACCGCTACGCGTGCCGCGACGTCGACT ACTCGCCGTACAAGCCGTCGTGCGTCGTCACGTGCGGCGAGGACAGGTGA GGGGGGTGGGGGGGGGGTCGCTGGGGGTGGCAGCGCTCCACGCGATATGA GGTGCTGTTGCAGCGTAGGCCAGTTTGTGAAACAGAAGCGTGCGTGAGGG TAACCCTCTCATATGCTGGTCCTGGCTCCGCGGGAGTACCGCCAGGTGCA AACACGCATTCCATGTGCCAACAGGCCAGGGTGTTCCAATTTCACAAGCG CCGGTGCGCTTTGCGCTGTGTTGTCACCGCGTGCCAAATGGCTTCTGGAC GCCAGCAGCACGCGTGCGGGCATCTCTGGTCAGCGCGGAGTGCAGACGCG CTCTGTGCTGCCGTGACATGATGTTCTCTGCTGCACGTGCCAACGCAGCT GATCGCAGCACCAGCAGCATGGCTCTTCGCACCTGAGCATCACCATCTGT GACTGTATGGCATGGCACCAGCGGATCCTGCAGGCGCAGGTTTTGGGCTG TGCTGTGCTGGCACGGTGTACCGCAAGCAGGCTGGCTTTTCAATTTTGAT GACCTCGCCGCTCTCTGAGCGATCCGCATTGTGCTGTGGTGCTCCTTGTT CATCAAAGGACATGGAGCATGATGCCTCTCAGACAGTTCCGCGTGCTGCA ACCCTGGGAGTGCACGCTGATCGCCCAGCCATACCCGTACCGTCGCCCCC CCCCCCCCCCCTTAGTCTGCAACCTGACGACTTTTCGCGCGCGCGCAGGC TCCTGCGCTTCTGGGACCTGCGCGCCCCCGGGCAGCCCCTCAAGAGCGTC CTCGCGCACCGCAACCACTGGGCGACGCGCGTCGCGTACAACCGCTTCCA CGACCAGCTGCTGGCGACGGCGGGCAGCGATGCGGCCGTGTGCCTGTGGC GCGTCTCGAGCCTGTGCGCGGCGCCGGGGCCGCTGCTGCTGGACGGCGAG GGGGACGGGGGGGGGGGCGGGGGGGGGGAAGGGGGGGATGGGGCTGCGGA CGTGCTCGCGCGCACGTACGGCGGGCACGAGGACAGCGTGTGCGCAGTGG CGTGGAGCGCGCGCGACGCGTGGGTGCTCACGTCGCTGGGGCACGACGGG CGCGTGTTTGCGCACCACGTGCCGTCCGCGGAGAAGTACAAGATTTTGCT GTGATAAGTAGCGGGGGGGGGAGCTCCGTGGAGAGCGCTCTGCCGG
back to top

Coding sequence (CDS) from alignment at Contig_235:27306..29401+

>mRNA_17937 ID=mRNA_17937|Name=jgi.p|Trimin1|354368|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1173bp|location=Sequence derived from alignment at Contig_235:27306..29401+ (Tribonema minus UTEX_B_3156 )
ATGTACAGCAATGCCTCCGCTGCCTACGACGGCCTCAAGCTGCCCAGCAG
GGCTCTGGCAGCAGTCACAGGCGACAAGGATCACCACGCCTTCCTGGCAG
GCACCTGTTGCCTCAAGGAGGCCAATGAGCTGCAGCTGCTGCACTTCTCG
GACGACACCAACGAGCTGACGTGCGCCGCCGTCTACTCCCACCCCGACGA
GATCTGGGACCTGGCGCCCTGCCCCTCCGATCGCAACCTGGTCCTGTCCT
GCCATAACAACAATGCGACAGGGCGAGGCGGAGCCCCCCCGCGATCCTCC
GATGCAGCCTTTGGCGTCATGCTGTGGAGACTTCCCGCCGCGATCCCCCA
ATCGCCAAGCAGCAGCGGCAACAGCAGCGAACCGGCGTCGCAGCCGATAG
ACAAGGTGGCGAGCCTGGGCAGCGCCGCCAAGCCGGCGTGCGCGCTGCTC
TGGGAGCCGGGCGGGCAGGGCAACAGGGCGGTGACGGTGGCGGGCGGCGA
TCTGGTACGGTGGGAGCTGAGCGGCGCCGCGGCGCGCGAGGCGACGACGG
TGAGGGTCACCGAGGGCGGCGCTGCCGCCGCTGCGGCGGCGTGGGACCCG
CACACGCGCACGAGCGTCGCCGTCGCGGCGGGCTGCGGCTTGCGCATCGC
AGACACGCGCAGCGGCGGCGCGTTCACGGCCGTCGCGAACGCGCACCGCT
ACGCGTGCCGCGACGTCGACTACTCGCCGTACAAGCCGTCGTGCGTCGTC
ACGTGCGGCGAGGACAGGCTCCTGCGCTTCTGGGACCTGCGCGCCCCCGG
GCAGCCCCTCAAGAGCGTCCTCGCGCACCGCAACCACTGGGCGACGCGCG
TCGCGTACAACCGCTTCCACGACCAGCTGCTGGCGACGGCGGGCAGCGAT
GCGGCCGTGTGCCTGTGGCGCGTCTCGAGCCTGTGCGCGGCGCCGGGGCC
GCTGCTGCTGGACGGCGAGGGGGACGGGGGGGGGGGCGGGGGGGGGGAAG
GGGGGGATGGGGCTGCGGACGTGCTCGCGCGCACGTACGGCGGGCACGAG
GACAGCGTGTGCGCAGTGGCGTGGAGCGCGCGCGACGCGTGGGTGCTCAC
GTCGCTGGGGCACGACGGGCGCGTGTTTGCGCACCACGTGCCGTCCGCGG
AGAAGTACAAGATTTTGCTGTGA
back to top