mRNA_17932 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|354266
Unique NamemRNA_17932
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|354266 vs. uniprot
Match: A0A835Z1G3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1G3_9STRA)

HSP 1 Score: 152 bits (385), Expect = 3.410e-45
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1 
Query:    1 MLNAADGRLMRQQPLAAAAPDYGSSGRGGXXXXXCGSSVGPRDSGSVRHSGGARRSDDGGYLSVEGAPAAADATASGGGGDGVXXXXXXXXXXXXXXALPPFTT 312
            MLNAADGRLMRQQPLAAAAPDYGSSGRGGXXXXXCGSSVGPRDSGSVRHSGGARRSDDGGYLSVEGAPAAADATASGGGGDGVXXXXXXXXXXXXXXALPPFTT
Sbjct:    1 MLNAADGRLMRQQPLAAAAPDYGSSGRGGXXXXXCGSSVGPRDSGSVRHSGGARRSDDGGYLSVEGAPAAADATASGGGGDGVXXXXXXXXXXXXXXALPPFTT 104
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354266 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z1G3_9STRA3.410e-45100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_223contigContig_223:174545..176363 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|354266|estExt_Genemark1.C_Ctg_2230024
Hectar predicted targeting categoryother localisation
TranscriptId354588
TrackFilteredModels1
ProteinId354266
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354266gene_17932Tribonema minus UTEX_B_3156 geneContig_223 174545..176363 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17932_1exon_17932_1Tribonema minus UTEX_B_3156 exonContig_223 174545..174836 +
exon_17932_2exon_17932_2Tribonema minus UTEX_B_3156 exonContig_223 176169..176363 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17932CDS_17932Tribonema minus UTEX_B_3156 CDSContig_223 174545..174836 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_17932UTR3_17932Tribonema minus UTEX_B_3156 three_prime_UTRContig_223 176192..176363 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354266Trimin1|354266|estExt_Genemark1.C_Ctg_2230024Tribonema minus UTEX_B_3156 polypeptideContig_223 174545..176191 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17932 ID=mRNA_17932|Name=jgi.p|Trimin1|354266|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=487bp|location=Sequence derived from alignment at Contig_223:174545..176363+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGAACGCCGCCGACGGGCGCCTCATGCGGCAGCAGCCGCTGGCCGC
GGCGGCGCCGGACTACGGCAGCAGCGGGCGCGGCGGCGGTGGCGGCAGCG
GCTGCGGCAGCAGCGTCGGCCCGCGGGACTCCGGCAGCGTGCGGCACAGC
GGCGGTGCGCGGCGCAGCGACGACGGCGGATACTTGTCGGTTGAGGGCGC
GCCTGCGGCGGCGGACGCGACGGCGAGCGGCGGCGGCGGTGACGGCGTTG
GCGGCGGCAGCGGCGGTGACGGCGCTGGCGGCGGCAGCGGCGCGCTGCCA
CCGTTTACCACATAACCGCGACCGGCCTCACCCCATTACTCACTACGAAT
GTACAGGGCGCGGGGCGGCCAATGTGTGTGTCTCTATACATGTACGCTGA
GCTTCGCTCCGTGGGACCATTTGATGGGCACGAGTAATGCCCCCCCCCCT
ACCCTCACCCCTTCCCCCACGACCTACTCAAAACCCT
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protein sequence of jgi.p|Trimin1|354266

>Trimin1|354266|estExt_Genemark1.C_Ctg_2230024 ID=Trimin1|354266|estExt_Genemark1.C_Ctg_2230024|Name=jgi.p|Trimin1|354266|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=105bp
MLNAADGRLMRQQPLAAAAPDYGSSGRGGGGGSGCGSSVGPRDSGSVRHS
GGARRSDDGGYLSVEGAPAAADATASGGGGDGVGGGSGGDGAGGGSGALP
PFTT*
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mRNA from alignment at Contig_223:174545..176363+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17932 ID=mRNA_17932|Name=jgi.p|Trimin1|354266|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1819bp|location=Sequence derived from alignment at Contig_223:174545..176363+ (Tribonema minus UTEX_B_3156 )
ATGCTGAACGCCGCCGACGGGCGCCTCATGCGGCAGCAGCCGCTGGCCGC
GGCGGCGCCGGACTACGGCAGCAGCGGGCGCGGCGGCGGTGGCGGCAGCG
GCTGCGGCAGCAGCGTCGGCCCGCGGGACTCCGGCAGCGTGCGGCACAGC
GGCGGTGCGCGGCGCAGCGACGACGGCGGATACTTGTCGGTTGAGGGCGC
GCCTGCGGCGGCGGACGCGACGGCGAGCGGCGGCGGCGGTGACGGCGTTG
GCGGCGGCAGCGGCGGTGACGGCGCTGGCGGCGGCAGCGGCGGTAGCGCG
CGCAGCACTCATATGCGCCGCCGCTGCCGCCGGTGCTGCCGCCAGCGTGC
TGTGCTGCCGGCATTGCGGACAGATTGGCTAGCATTTGCAGCACAGGCGC
GTTGCATGTGCGCGCCGTGCGCCTCGTTTTTGAATGCATATACGTGTCAT
GTAGATGAAGCATACTGCCGCTGGCGCTTTGTGTCTGCCCTTCTGCTGTG
CTGCCCCATCAATTCGTGCTCCTCTGTTGGCGAGGTGCCTGCGCGCACTA
CAGCACGGTTGGCCGTCGCGCACGCAATATGGCGCCCTGTGCACAATGTT
TTAATGTCCACTTGAATGCAAATGTACAGGCGGTCCAGAATGGTCATTCA
TCTCGCAGGTGCCTTTCTGACCTTGACAGAATGTGACCACTTGCATCGAG
ATAATATTCACGGCAGAATGCAAGGTACCTTAAAGTTTGAGGGATGTTTG
TGGAAAAGCCCTGTACATTAATGAGGCACACGGCAAGTGTGAAGCAGAGC
AGATATCTCTGCGCATGCGTCATGCGGCAATCGCCGTTATTGGGTGAGCA
TTGCACTGGTGCTGCCCTCGTAACCAGGGCCAGTGCAAACAGCACCAGCC
ATTGGAAGAAATGCCCCGTGAAGGGCAATGCCCCAAGCTCTTTTAAAGCA
CATGCTCCCCGTGCGTGTAGTCACTGGTTGCCTTCAATGTCAGGAGTTGA
GACTTCTGAAGGTGATTGCTGTCTGCCGTGCAACATTCCATGTGGGACTC
TGAACACCAAGTGATGTACTGCACTTGGAAGTATACCCCAGATTCAATAC
ATTCAAGCATTACATCCATGCACGAAAGTCCGTGTCAGCGCCACCTCTTT
TGAGACCATGCATGCATGCACATCGCTCTCACCGAATCTCACACTGTCAG
TAGAAGTAAGATATGCAATCATGATGCGAAGCTTGTGTCAAGTCTCCTCG
CAAGTGCACTGTGACTGACCCCATGCACATGCTTTCAGTACCACTTGGGA
ACAGAAGCTGCATTGCATCAGACACCTGCTGCGCCGTGAATTGAGAGTGA
TGGCGCTGAACCTGAACAAATTAGACAATTATCAACCATCTACGACAATC
ACGTTTGTGCACTGCAACAAAGCAGTTCTTCGACCTGCCATTGCAGTTGC
CGTTGCAGTAGGGATTGCAATCAAATGGTGATACCAGTACGGACAGCAGA
AAAAACTCCACGGTATCTCCAATGGACTTCTATTTACATGCAACCTCCTC
TTTAGTCTTCAGTAGGTGGAGCGCCGCAGCGACAGCTCGCGTGTGCCACT
ATGCCACACGCGCGCTGCCGGCAGCGCTGCCACCGTTTACCACATAACCG
CGACCGGCCTCACCCCATTACTCACTACGAATGTACAGGGCGCGGGGCGG
CCAATGTGTGTGTCTCTATACATGTACGCTGAGCTTCGCTCCGTGGGACC
ATTTGATGGGCACGAGTAATGCCCCCCCCCCTACCCTCACCCCTTCCCCC
ACGACCTACTCAAAACCCT
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Coding sequence (CDS) from alignment at Contig_223:174545..176363+

>mRNA_17932 ID=mRNA_17932|Name=jgi.p|Trimin1|354266|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=315bp|location=Sequence derived from alignment at Contig_223:174545..176363+ (Tribonema minus UTEX_B_3156 )
ATGCTGAACGCCGCCGACGGGCGCCTCATGCGGCAGCAGCCGCTGGCCGC
GGCGGCGCCGGACTACGGCAGCAGCGGGCGCGGCGGCGGTGGCGGCAGCG
GCTGCGGCAGCAGCGTCGGCCCGCGGGACTCCGGCAGCGTGCGGCACAGC
GGCGGTGCGCGGCGCAGCGACGACGGCGGATACTTGTCGGTTGAGGGCGC
GCCTGCGGCGGCGGACGCGACGGCGAGCGGCGGCGGCGGTGACGGCGTTG
GCGGCGGCAGCGGCGGTGACGGCGCTGGCGGCGGCAGCGGCGCGCTGCCA
CCGTTTACCACATAA
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