mRNA_17918 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|180670
Unique Name	mRNA_17918
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

[Close]

BLAST of jgi.p|Trimin1|180670 vs. uniprot
Match: A0A835Z0D6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0D6_9STRA)

HSP 1 Score: 218 bits (556), Expect = 3.250e-72
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1

Query:    1 MHSTIDVAARVDCLFDDGEYYRGSVAAANADGTYRIVFDDGDIRHDAPLSDLLSPLLPGTRVSCYFPSEADYFPGVIGADNGDGTYHIRYDDGDELESASRRDIR 315
            MHSTIDVAARVDCLFDDGEYYRGSVAAANADGTYRIVFDDGDIRHDAPLSDLLSPLLPGTRVSCYFPSEADYFPGVIGADNGDGTYHIRYDDGDELESASRRDIR
Sbjct:    1 MHSTIDVAARVDCLFDDGEYYRGSVAAANADGTYRIVFDDGDIRHDAPLSDLLSPLLPGTRVSCYFPSEADYFPGVIGADNGDGTYHIRYDDGDELESASRRDIR 105

[Close]

BLAST of jgi.p|Trimin1|180670 vs. uniprot
Match: A0A6H5JCV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCV6_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 1.860e-25
Identity = 56/97 (57.73%), Postives = 65/97 (67.01%), Query Frame = 1

Query:   28 RVDCLFDDGEYYRGSVAAANADGT-YRIVFDDGDIRHDAPLSDLLSPLLPGTRVSCYFPSEADYFPGVIGADNGDGTYHIRYDDGDELESASRRDIR 315
            RVDCLF D EY+RG V   +  G+ YR++FDDGDIR DAP  DL  PL  G RV C F  E  YF GVI  DNGD TY + +DDGD L++A R DIR
Sbjct:   14 RVDCLFGD-EYFRGKVDDTDGGGSSYRVIFDDGDIREDAPPEDLEIPLEQGCRVECMFEGEDGYFDGVISTDNGDATYKVDFDDGDVLDAAPRHDIR 109

[Close]

BLAST of jgi.p|Trimin1|180670 vs. uniprot
Match: D7FKD5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKD5_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 1.880e-25
Identity = 56/97 (57.73%), Postives = 65/97 (67.01%), Query Frame = 1

Query:   28 RVDCLFDDGEYYRGSVAAANADGT-YRIVFDDGDIRHDAPLSDLLSPLLPGTRVSCYFPSEADYFPGVIGADNGDGTYHIRYDDGDELESASRRDIR 315
            RVDCLF D EY+RG V   +  G+ YR++FDDGDIR DAP  DL  PL  G RV C F  E  YF GVI  DNGD TY + +DDGD L++A R DIR
Sbjct:   14 RVDCLFGD-EYFRGKVDDTDGSGSSYRVIFDDGDIREDAPPEDLELPLEQGCRVECMFEGEDGYFDGVISIDNGDATYKVDFDDGDVLDAAPRHDIR 109

[Close]

BLAST of jgi.p|Trimin1|180670 vs. uniprot
Match: A0A7S2RD91_9STRA (Hypothetical protein (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RD91_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 5.350e-11
Identity = 33/94 (35.11%), Postives = 52/94 (55.32%), Query Frame = 1

Query:   55 EYYRGSVAAANADGTYRIVFDDGDIRHDAPLSDL-------LSPLLPGTRVSCYFPSEADYFPGVIGADNGDGTYHIRYDDGDELESASRRDIR 315
            EY+ G V  AN DGTYR+ FDDG+I       ++       ++    G R     P+  +YF GV+   N DGTY +++DDG+ +ES   ++++
Sbjct:   19 EYFAGVVEKANQDGTYRMKFDDGEIVESVKEQEMKPEGQKNIAKYKVGDRAMAKIPAWNEYFAGVVEKANQDGTYRMKFDDGEIVESVKEQEMK 112

[Close]

BLAST of jgi.p|Trimin1|180670 vs. uniprot
Match: A0A2R5GZL3_9STRA (Calmodulin n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GZL3_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.400e-10
Identity = 41/114 (35.96%), Postives = 57/114 (50.00%), Query Frame = 1

Query:   19 VAARVDCLFDD-GEYYRGSVAAANADGTYRIVFDDGDIRHDAPLSDLL--------SPLLP------GTRVSCYFPSEADYFPGVIGADNGDGTYHIRYDDGDELESASRRDIR 315
            V ARV+    +  ++Y G+V   NADGTY +VFDDGD+   A    +         S   P      G RV    P    ++PG I   +GDGT+H+ +DDGD +E A    +R
Sbjct:  623 VGARVEVQIPEWDQHYPGTVKNVNADGTYHVVFDDGDVVEHAKPEQMRALAQQAVKSAKKPETAWKVGARVEVQIPEWDQHYPGTIKTAHGDGTFHVVFDDGDVVEHAKPEQMR 736

[Close]

BLAST of jgi.p|Trimin1|180670 vs. uniprot
Match: A0A7S0AW00_9DINO (Hypothetical protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0AW00_9DINO)

HSP 1 Score: 57.4 bits (137), Expect = 2.730e-8
Identity = 30/101 (29.70%), Postives = 52/101 (51.49%), Query Frame = 1

Query:   46 DDGEYYRGSVAAANADGTYRIVFDDGD--------IRHDAPLSDLLSPLLPGTRVSCYFPSEADYFPGVIGADNGDGTYHIRYDD---GDELESASRRDIR 315
            DDG++Y G+VA  NADG++++ +DD D         R D     +    + G  V    P +  ++PG +   N DG++ +++DD   G E    +R D++
Sbjct:    5 DDGQWYPGTVAKVNADGSFQVKWDDPDGGPETNDIAREDMKKVIIFKDYVVGDDVKGMSPDDGQWYPGTVAKVNADGSFQVKWDDPDGGPETNDIAREDMK 105

[Close]

BLAST of jgi.p|Trimin1|180670 vs. uniprot
Match: A0A7S2REE1_9STRA (Hypothetical protein (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2REE1_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 3.680e-8
Identity = 37/113 (32.74%), Postives = 50/113 (44.25%), Query Frame = 1

Query:   31 VDCLFDDG-EYYRGSVAAANADGTYRIVFDDGDIRHDAPLSDLLS------------------PLLPGTRVSCYFPSEADYFPGVIGADNGDGTYHIRYDDGDELESASRRDI 312
            ++ L+  G +YY+G ++  N DGTY I++DDGD         +                    PL  G +V   F     Y+ G I   N DGTY I+Y DGD   S SR  I
Sbjct:  597 IEALYKGGRKYYKGCISRVNVDGTYDILYDDGDRETKVAAEKIRKTNAGGSDSEGDADTGNGKPLRVGMKVKARFKGGRKYYEGQIKRKNPDGTYAIKYQDGDTERSVSRDKI 709

[Close]

BLAST of jgi.p|Trimin1|180670 vs. uniprot
Match: F0YSL2_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YSL2_AURAN)

HSP 1 Score: 58.5 bits (140), Expect = 8.630e-8
Identity = 37/117 (31.62%), Postives = 51/117 (43.59%), Query Frame = 1

Query:   13 IDVAARVDCLFDD-GEYYRGSVAAANADGTYRIVFDDGDIRH-----------DAPLSDLLSP---------------LLPGTRVSCYFPSEADYFPGVIGADNGDGTYHIRYDDGD 282
            +   ARV+  +   G+ + G V AAN DGTY +++DDGD+             D P S    P                + G RV   +  +   FPG + A N DGT  + YDDGD
Sbjct:   60 LPAGARVEARYKGKGKVFPGRVIAANGDGTYNVMYDDGDVNERLPRAMVRLLADGPPSPRAEPEVQVIHTDEVAVPDGFVVGARVLAKYRGKGQTFPGAVAAVNADGTVDVAYDDGD 176

[Close]

BLAST of jgi.p|Trimin1|180670 vs. uniprot
Match: H3GKU4_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GKU4_PHYRM)

HSP 1 Score: 57.8 bits (138), Expect = 1.800e-7
Identity = 36/106 (33.96%), Postives = 50/106 (47.17%), Query Frame = 1

Query:    7 STIDVAARVDCLFDDG-EYYRGSVAAANADGTYRIVFDDGDIRHDAPLSDLL-------------SPLLPGTRVSCYFPSEADYFPGVIGADNGDGTYHIRYDDGD 282
            ST+ V   V+  F +G + + G ++  ++DGTY + FDDGD     P S +              +    G  V   +   A YFPG I     DGTY IRY+DGD
Sbjct:  736 STLQVGDLVEANFKNGVKMFPGKISRVHSDGTYDVTFDDGDSDRRVPRSRIKVQEGKEESSQKKKTGFAVGDAVQAKYKKGAKYFPGTIERVRPDGTYDIRYEDGD 841

[Close]

BLAST of jgi.p|Trimin1|180670 vs. uniprot
Match: A0A7S4VEX4_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4VEX4_9DINO)

HSP 1 Score: 56.6 bits (135), Expect = 4.260e-7
Identity = 36/103 (34.95%), Postives = 54/103 (52.43%), Query Frame = 1

Query:   49 DGEYYRGSVAAANADGTYRIVFDDGDIRHDAPLSDLLSP-------LLPGTRVS----CYFPSEADYFPGVIGADNGDGTYHIRYDD---GDELESASRRDIR 315
            DG++Y GSV AANADGT+++ +DD D     P ++ + P       +  G +V       FP +   +PG +   N DGT+ +R+DD   G E      RD+R
Sbjct:  153 DGQWYPGSVEAANADGTFQVRWDDPD---GGPETEGVKPEAMKKVTVFRGYKVEDVVEAVFPDDGQMYPGRVAKANADGTFQVRWDDPEGGPEESPVRPRDMR 252

[Close]

BLAST of jgi.p|Trimin1|180670 vs. uniprot
Match: A0A835Z1F0_9STRA (Calpain catalytic domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1F0_9STRA)

HSP 1 Score: 160 bits (405), Expect = 2.990e-50
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1

Query:    1 AGHAYTVLQAVETSHGHLLMQLRNPWGRGEWRGDWSDASGMLNDDICKELSHVIDAEDGTFWCVTPFKVF 210
            AGHAYTVLQAVETSHGHLLMQLRNPWGRGEWRGDWSDASGMLNDDICKELSHVIDAEDGTFWCVTPFKVF
Sbjct:    1 AGHAYTVLQAVETSHGHLLMQLRNPWGRGEWRGDWSDASGMLNDDICKELSHVIDAEDGTFWCVTPFKVF 70

[Close]

BLAST of jgi.p|Trimin1|180670 vs. uniprot
Match: A0A835Z9R5_9STRA (Calpain catalytic domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9R5_9STRA)

HSP 1 Score: 125 bits (313), Expect = 2.660e-36
Identity = 52/62 (83.87%), Postives = 57/62 (91.94%), Query Frame = 1

Query:    1 AGHAYTVLQAVETSHGHLLMQLRNPWGRGEWRGDWSDASGMLNDDICKELSHVIDAEDGTFW 186
            AGHAYTVLQAVETSHGHLL+QLRNPWG+GEW+GDWSD SGML D++CKEL HVID  DGTFW
Sbjct:    1 AGHAYTVLQAVETSHGHLLIQLRNPWGKGEWKGDWSDESGMLTDEMCKELKHVIDDADGTFW 62

[Close]

BLAST of jgi.p|Trimin1|180670 vs. uniprot
Match: A0A835ZFZ2_9STRA (Calpain catalytic domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFZ2_9STRA)

HSP 1 Score: 119 bits (299), Expect = 1.020e-30
Identity = 52/61 (85.25%), Postives = 55/61 (90.16%), Query Frame = 1

Query:    4 GHAYTVLQAVETSHGHLLMQLRNPWGRGEWRGDWSDASGMLNDDICKELSHVIDAEDGTFW 186
            GHAYTVLQAVETS+GHLL+QLRNPWG GE  GDWSDASGML D+ICKEL HVID EDGTFW
Sbjct:  183 GHAYTVLQAVETSYGHLLVQLRNPWGEGECTGDWSDASGMLTDEICKELKHVIDDEDGTFW 243

[Close]

BLAST of jgi.p|Trimin1|180670 vs. uniprot
Match: A0A835ZBB9_9STRA (Calpain catalytic domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBB9_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 3.670e-22
Identity = 40/51 (78.43%), Postives = 42/51 (82.35%), Query Frame = 1

Query:   34 ETSHGHLLMQLRNPWGRGEWRGDWSDASGMLNDDICKELSHVIDAEDGTFW 186
            E+ H  L   LRNPWGRGEWRGDWSDASGML D+ICKEL HVID EDGTFW
Sbjct:  240 ESVHAFLSSALRNPWGRGEWRGDWSDASGMLTDEICKELKHVIDDEDGTFW 290

[Close]

BLAST of jgi.p|Trimin1|180670 vs. uniprot
Match: A0A835Z8S4_9STRA (Calpain catalytic domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8S4_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 3.940e-22
Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 1

Query:    1 AGHAYTVLQAVETSHGHLLMQLRNPWGRGEWRGDWSDASGMLNDDICKELSHVIDAEDGTFW 186
            AGHAYT+L+A ET HGH L+QLRNPWGR E+ G+WSD SGMLN  + +EL H I AEDGTFW
Sbjct:  302 AGHAYTILKAQETKHGHQLIQLRNPWGRHEFTGNWSDNSGMLNKGLLEELEHTI-AEDGTFW 362

[Close]

BLAST of jgi.p|Trimin1|180670 vs. uniprot
Match: A0A835YKV9_9STRA (Calpain catalytic domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKV9_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 5.160e-22
Identity = 42/60 (70.00%), Postives = 50/60 (83.33%), Query Frame = 1

Query:    7 HAYTVLQAVETSHGHLLMQLRNPWGRGEWRGDWSDASGMLNDDICKELSHVIDAEDGTFW 186
            HAYT+L+A ET HGH L+QLRNPWG+ E+ GDWSD SGML+ ++ KEL HVI AEDGTFW
Sbjct:  306 HAYTILRAFETKHGHQLIQLRNPWGQREFTGDWSDTSGMLSKELLKELDHVI-AEDGTFW 364

[Close]

BLAST of jgi.p|Trimin1|180670 vs. uniprot
Match: R1C8G2_EMIHU (Calpain catalytic domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1C8G2_EMIHU)

HSP 1 Score: 75.5 bits (184), Expect = 2.610e-14
Identity = 35/61 (57.38%), Postives = 41/61 (67.21%), Query Frame = 1

Query:    4 GHAYTVLQAVETSHGHLLMQLRNPWGRGEWRGDWSDASGMLNDDICKELSHVIDAEDGTFW 186
            GHAY+ L+  E   GH L+QLRNPWGR EWRGDWSDAS +    +   L    DA+DGTFW
Sbjct:  232 GHAYSCLRVAE-EEGHRLLQLRNPWGRTEWRGDWSDASHLWTPRLKARLGWS-DADDGTFW 290

[Close]

BLAST of jgi.p|Trimin1|180670 vs. uniprot
Match: A0A7S3T330_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3T330_EMIHU)

HSP 1 Score: 75.1 bits (183), Expect = 3.750e-14
Identity = 35/61 (57.38%), Postives = 40/61 (65.57%), Query Frame = 1

Query:    4 GHAYTVLQAVETSHGHLLMQLRNPWGRGEWRGDWSDASGMLNDDICKELSHVIDAEDGTFW 186
            GHAY  L+  E   GH L+QLRNPWGR EWRGDWSDAS +    +   L    DA+DGTFW
Sbjct:  521 GHAYACLRVAE-EEGHRLLQLRNPWGRTEWRGDWSDASHLWTPRLKARLGWS-DADDGTFW 579

[Close]

BLAST of jgi.p|Trimin1|180670 vs. uniprot
Match: F2TVF2_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2TVF2_SALR5)

HSP 1 Score: 73.6 bits (179), Expect = 1.200e-13
Identity = 30/56 (53.57%), Postives = 38/56 (67.86%), Query Frame = 1

Query:   19 VLQAVETSHGHLLMQLRNPWGRGEWRGDWSDASGMLNDDICKELSHVIDAEDGTFW 186
            +L A +TS GH L+ LRNPWG  EW+GDWSD S +  DDI KE+    + +DG FW
Sbjct:    1 MLSAKQTSKGHRLVCLRNPWGEFEWKGDWSDNSSLWTDDIVKEVGATFNDKDGLFW 56

[Close]

BLAST of jgi.p|Trimin1|180670 vs. uniprot
Match: A0A7S1J9Z6_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1J9Z6_9EUGL)

HSP 1 Score: 72.8 bits (177), Expect = 2.420e-13
Identity = 32/65 (49.23%), Postives = 38/65 (58.46%), Query Frame = 1

Query:    4 GHAYTVLQAVETSHGHLLMQLRNPWGRGEWRGDWSDASGMLNDDICKELSHVIDAEDGTFWCVTP 198
            GH Y VL A     G  L++LRNPWGRGEW G+WSD+S M  D    EL++    E G FW   P
Sbjct:  322 GHGYCVLDAQCLRSGERLLKLRNPWGRGEWMGEWSDSSPMWTDAARTELAYRPHTEPGVFWIAWP 386

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|180670 vs. uniprot
BLAST of jgi.p|Trimin1|180670 vs. uniprot

BLAST of jgi.p|Trimin1|180670 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835Z0D6_9STRA	3.250e-72	100.00	Uncharacterized protein (Fragment) n=1 Tax=Tribone...	[more]
A0A6H5JCV6_9PHAE	1.860e-25	57.73	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FKD5_ECTSI	1.880e-25	57.73	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A7S2RD91_9STRA	5.350e-11	35.11	Hypothetical protein (Fragment) n=1 Tax=labyrinthu...	[more]
A0A2R5GZL3_9STRA	1.400e-10	35.96	Calmodulin n=1 Tax=Hondaea fermentalgiana TaxID=23...	[more]
A0A7S0AW00_9DINO	2.730e-8	29.70	Hypothetical protein (Fragment) n=1 Tax=Pyrodinium...	[more]
A0A7S2REE1_9STRA	3.680e-8	32.74	Hypothetical protein (Fragment) n=1 Tax=labyrinthu...	[more]
F0YSL2_AURAN	8.630e-8	31.62	Uncharacterized protein (Fragment) n=1 Tax=Aureoco...	[more]
H3GKU4_PHYRM	1.800e-7	33.96	Uncharacterized protein n=1 Tax=Phytophthora ramor...	[more]
A0A7S4VEX4_9DINO	4.260e-7	34.95	Hypothetical protein n=1 Tax=Alexandrium monilatum...	[more]

Pages

BLAST of jgi.p|Trimin1|180670 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835Z1F0_9STRA	2.990e-50	100.00	Calpain catalytic domain-containing protein n=1 Ta...	[more]
A0A835Z9R5_9STRA	2.660e-36	83.87	Calpain catalytic domain-containing protein (Fragm...	[more]
A0A835ZFZ2_9STRA	1.020e-30	85.25	Calpain catalytic domain-containing protein n=1 Ta...	[more]
A0A835ZBB9_9STRA	3.670e-22	78.43	Calpain catalytic domain-containing protein n=1 Ta...	[more]
A0A835Z8S4_9STRA	3.940e-22	69.35	Calpain catalytic domain-containing protein n=2 Ta...	[more]
A0A835YKV9_9STRA	5.160e-22	70.00	Calpain catalytic domain-containing protein n=1 Ta...	[more]
R1C8G2_EMIHU	2.610e-14	57.38	Calpain catalytic domain-containing protein n=1 Ta...	[more]
A0A7S3T330_EMIHU	3.750e-14	57.38	Hypothetical protein n=1 Tax=Emiliania huxleyi Tax...	[more]
F2TVF2_SALR5	1.200e-13	53.57	Uncharacterized protein n=1 Tax=Salpingoeca rosett...	[more]
A0A7S1J9Z6_9EUGL	2.420e-13	49.23	Hypothetical protein (Fragment) n=1 Tax=Eutreptiel...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_223	contig	Contig_223:30736..31050 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|180670\|e_gw1.223.2.1
Description	Tudor domain
COG category	S
Max annot lvl	44056.XP_009036127.1\|-
EggNOG OGs	2CMGM@1\|root,2QQAC@2759\|Eukaryota
Evalue	5.15e-10
Seed ortholog	44056.XP_009036127.1
Hectar predicted targeting category	other localisation
Ec32 ortholog description	conserved unknown protein
Ec32 ortholog	Ec-05_005800.1
TranscriptId	180992
Track	FilteredModels1
ProteinId	180670

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|180670	gene_17918	Tribonema minus UTEX_B_3156	gene	Contig_223 30736..31050 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_17918_1	exon_17918_1	Tribonema minus UTEX_B_3156	exon	Contig_223 30736..31050 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_17918	CDS_17918	Tribonema minus UTEX_B_3156	CDS	Contig_223 30736..31050 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|180670	Trimin1\|180670\|e_gw1.223.2.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_223 30736..31050 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_223:30736..31050+
coding sequence from alignment at Contig_223:30736..31050+

spliced messenger RNA

>mRNA_17918 ID=mRNA_17918|Name=jgi.p|Trimin1|180670|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=315bp|location=Sequence derived from alignment at Contig_223:30736..31050+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCATTCGACCATTGACGTAGCTGCTAGAGTGGATTGCCTCTTTGACGA
CGGAGAGTACTACAGAGGCAGCGTTGCAGCGGCCAACGCAGATGGCACCT
ACAGGATCGTGTTTGACGACGGCGACATCCGCCATGACGCGCCCCTGAGC
GATCTCCTGAGCCCTCTCCTGCCTGGCACCAGAGTCTCTTGCTACTTTCC
CTCTGAAGCTGACTACTTTCCAGGGGTCATCGGCGCAGACAATGGCGACG
GCACCTACCACATACGCTACGACGACGGCGACGAGCTGGAGTCTGCGTCG
CGACGCGACATCAGG

protein sequence of jgi.p|Trimin1|180670

>Trimin1|180670|e_gw1.223.2.1 ID=Trimin1|180670|e_gw1.223.2.1|Name=jgi.p|Trimin1|180670|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=105bp
MHSTIDVAARVDCLFDDGEYYRGSVAAANADGTYRIVFDDGDIRHDAPLS
DLLSPLLPGTRVSCYFPSEADYFPGVIGADNGDGTYHIRYDDGDELESAS
RRDIR

mRNA from alignment at Contig_223:30736..31050+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_17918 ID=mRNA_17918|Name=jgi.p|Trimin1|180670|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=315bp|location=Sequence derived from alignment at Contig_223:30736..31050+ (Tribonema minus UTEX_B_3156 )
ATGCATTCGACCATTGACGTAGCTGCTAGAGTGGATTGCCTCTTTGACGA
CGGAGAGTACTACAGAGGCAGCGTTGCAGCGGCCAACGCAGATGGCACCT
ACAGGATCGTGTTTGACGACGGCGACATCCGCCATGACGCGCCCCTGAGC
GATCTCCTGAGCCCTCTCCTGCCTGGCACCAGAGTCTCTTGCTACTTTCC
CTCTGAAGCTGACTACTTTCCAGGGGTCATCGGCGCAGACAATGGCGACG
GCACCTACCACATACGCTACGACGACGGCGACGAGCTGGAGTCTGCGTCG
CGACGCGACATCAGG

Coding sequence (CDS) from alignment at Contig_223:30736..31050+

>mRNA_17918 ID=mRNA_17918|Name=jgi.p|Trimin1|180670|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=315bp|location=Sequence derived from alignment at Contig_223:30736..31050+ (Tribonema minus UTEX_B_3156 )
ATGCATTCGACCATTGACGTAGCTGCTAGAGTGGATTGCCTCTTTGACGA
CGGAGAGTACTACAGAGGCAGCGTTGCAGCGGCCAACGCAGATGGCACCT
ACAGGATCGTGTTTGACGACGGCGACATCCGCCATGACGCGCCCCTGAGC
GATCTCCTGAGCCCTCTCCTGCCTGGCACCAGAGTCTCTTGCTACTTTCC
CTCTGAAGCTGACTACTTTCCAGGGGTCATCGGCGCAGACAATGGCGACG
GCACCTACCACATACGCTACGACGACGGCGACGAGCTGGAGTCTGCGTCG
CGACGCGACATCAGG