mRNA_17673 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|354280
Unique NamemRNA_17673
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|354280 vs. uniprot
Match: A0A835Z2Q2_9STRA (Beta-lactamase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2Q2_9STRA)

HSP 1 Score: 525 bits (1353), Expect = 2.140e-183
Identity = 316/316 (100.00%), Postives = 316/316 (100.00%), Query Frame = 1 
Query:    1 MGVEHVFITHGHLDHCGAIFTHARLRGRDLPPAKAKGAFEELGEDELPMEIVPIQPGEEVSIGNGCYVAPFPTAHRVPSQGYIIRDRRPRGLKPEYQGLAAAALKELRAATARTRPAGGGAEGAARDNGXXXXXXXXXXXXAGVEVGQLTDTVEVAFTGDTSFAPLLEQEEIWRAKILILEDAPRYASAVTSARGRVAMTYLDGTLDGAVKWCHTHLSEVAASAHRFSGVRELIACHVTARKSRFDAMRLLRKALPRDLAERTSVMLRLFGADEEVTRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPVCDPAS 948
            MGVEHVFITHGHLDHCGAIFTHARLRGRDLPPAKAKGAFEELGEDELPMEIVPIQPGEEVSIGNGCYVAPFPTAHRVPSQGYIIRDRRPRGLKPEYQGLAAAALKELRAATARTRPAGGGAEGAARDNGXXXXXXXXXXXXAGVEVGQLTDTVEVAFTGDTSFAPLLEQEEIWRAKILILEDAPRYASAVTSARGRVAMTYLDGTLDGAVKWCHTHLSEVAASAHRFSGVRELIACHVTARKSRFDAMRLLRKALPRDLAERTSVMLRLFGADEEVTRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPVCDPAS
Sbjct:    1 MGVEHVFITHGHLDHCGAIFTHARLRGRDLPPAKAKGAFEELGEDELPMEIVPIQPGEEVSIGNGCYVAPFPTAHRVPSQGYIIRDRRPRGLKPEYQGLAAAALKELRAATARTRPAGGGAEGAARDNGXXXXXXXXXXXXAGVEVGQLTDTVEVAFTGDTSFAPLLEQEEIWRAKILILEDAPRYASAVTSARGRVAMTYLDGTLDGAVKWCHTHLSEVAASAHRFSGVRELIACHVTARKSRFDAMRLLRKALPRDLAERTSVMLRLFGADEEVTRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPVCDPAS 316
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BLAST of jgi.p|Trimin1|354280 vs. uniprot
Match: D8LB62_ECTSI (Metallo-beta-lactamase superfamily protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB62_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 1.040e-29
Identity = 97/290 (33.45%), Postives = 134/290 (46.21%), Query Frame = 1 
Query:    7 VEHVFITHGHLDHCGAIFTHARLRGRDL-PPAK-------------AKGAFEELGEDELPMEIVPIQPGEEVSIGNGCYVAPFPTAHRVPSQGYIIRDRRPRGLKPEYQGLAAAALKELRAATARTRPAGGGAEGAARDNGXXXXXXXXXXXXAGVEVGQLTDTVEVAFTGDTSFAPLLEQEEIWRAKILILEDAPRYASAVTSARGRVAMTYLDGTLDGAVKWCHTHLSEVAASAHRFSGVRELIACHVTARK-SRFDAMRLLRKALPRDLAERTSVMLRLFGADEEVT 831
            V HVF++HGHLDHCGAI +HARLR     PPAK              + AFEE+    + M+IV + P + V +G GC+V PF   HRV + G+ +   +  GLK EY+ L    +  LR                                  GV+V    +TVEV +TGDT    L+ Q  +W A++LI+E                 +TYLDG    A K  H H  +V  +  R   V +L+  HV+ R  S  + +RLL  ALP     + SV L  FGA + ++
Sbjct:  321 VAHVFVSHGHLDHCGAIVSHARLRALSQGPPAKYYMGAELASGMEKVRKAFEEVEGASIAMDIVAVGPEDRVDLGQGCFVRPFLVKHRVDALGFALMRLKTDGLKHEYRQLDGREIGALR--------------------------------KRGVDVQSSHETVEVVYTGDTVMDGLVSQPLVWEARMLIME-----------------VTYLDGDGSAAAKNFHVH--DVLDNMDRLRRVEQLVVAHVSERHGSHRNVLRLLSAALPPSFVNKVSVALGEFGASQHLS 559
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BLAST of jgi.p|Trimin1|354280 vs. uniprot
Match: A0A4D9D594_9STRA (Lactamase_B domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D594_9STRA)

HSP 1 Score: 122 bits (305), Expect = 4.620e-26
Identity = 92/293 (31.40%), Postives = 129/293 (44.03%), Query Frame = 1 
Query:    1 MGVEHVFITHGHLDHCGAIFTHARLRGRDLPPAK-------------AKGAFEELGEDELPMEIVPIQPGEEVSIGNGCYVAPFPTAHRVPSQGYIIRDRRPRGLKPEYQGLAAAALKELRAATARTRPAGGGAEGAARDNGXXXXXXXXXXXXAGVEVGQLTDTVEVAFTGDTSFAPLLEQEEIWRAKILILEDAPRYASAVTSARGRVAMTYLDGTLDGAVKWCHTHLSEVAASAHRFSGVRELIACHVTARKSRFD-AMRLLRKALPR--DLAERTSVMLRLFGADEEVT 831
            +G  H+F++HGH+DH GA+  HAR R     PAK             AK A+E L       EIV ++PG+   I     V  FPT HRVPSQGY I   + +GLK   + L++  L   R                                  G  V +L D VEVA+TGDT    +L+Q  + +A++LILE                  TYL+G +  A  W H H+ E+   A  F+    ++ CHV+ +  R+D  +R  +  +     LA +  V L  FG  E VT
Sbjct:  113 LGAGHIFVSHGHIDHIGALLNHARARTLSNKPAKYYVPVPATEPLLRAKAAYEALDGCAFNAEIVGVEPGDICRIHPNVRVEVFPTKHRVPSQGYAIIREKSKGLKAGCRNLSSHELARRR--------------------------------KQGESVVELEDIVEVAYTGDTILKAVLDQPLVRQARLLILE-----------------CTYLEGEIVWAHSWHHVHMQEIVKHAAAFASNERVVCCHVSRKYKRWDNVLRCFQSGMAPVPALAAKIGVTLAGFGRTEPVT 356
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BLAST of jgi.p|Trimin1|354280 vs. uniprot
Match: A0A0U9HQI1_KLENI (tRNAse Z1 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A0U9HQI1_KLENI)

HSP 1 Score: 98.6 bits (244), Expect = 6.840e-19
Identity = 83/285 (29.12%), Postives = 126/285 (44.21%), Query Frame = 1 
Query:   10 EHVFITHGHLDHCGAIFTHARLRGR-DLPPAKAK-------------GAFEELGEDELPMEIVPIQPGEEVSIGNGCYVAPFPTAHRVPSQGYIIRDRRPRGLKPEYQGLAAAALKELRAATARTRPAGGGAEGAARDNGXXXXXXXXXXXXAGVEVGQLTDTVEVAFTGDTSFAPLLE--QEEIWRAKILILEDAPRYASAVTSARGRVAMTYLD--GTLDGAVKWCHTHLSEVAASAHRFSGVRELIACHVTARKSRFDAMRLLRKALPRDLAERTSVMLRLF 810
            ++V I+H H+DH G +   A  RG   L P +                AF  L   EL  +++ ++ GEE+ +    +V PF T H VPSQGY++  RR + LK E+ GL    +  LR                                 +GVE+  + +  EVAFTGDT+   L +    ++ RAK+LI+E                 MT++D   T++ A KW HTH+ EV   AH F     ++  H +AR  R D +  + + LP    E+ + +L  F
Sbjct:  113 DNVLISHAHMDHIGGVCLQAATRGLFSLKPPRIVVPKVIVPGVENLFNAFRALDNAELEHKLIGLEIGEELRLSGELFVKPFRTYHVVPSQGYVVYSRRQK-LKKEFVGLPGPEIGRLR--------------------------------KSGVEITDVEEVPEVAFTGDTTAEFLTDPGNADVLRAKLLIME-----------------MTFIDDSSTVEHARKWGHTHIDEVVPLAHLFQN-EAILFIHFSARYRRKDILEAIER-LPPGFREKVTPLLERF 345
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BLAST of jgi.p|Trimin1|354280 vs. uniprot
Match: A0A484DTJ7_BRELC (Lactamase_B domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DTJ7_BRELC)

HSP 1 Score: 96.3 bits (238), Expect = 1.430e-18
Identity = 85/276 (30.80%), Postives = 119/276 (43.12%), Query Frame = 1 
Query:   10 EHVFITHGHLDHCGAIFTHARLRGR-DLPPAK----------AKGAFE---ELGEDELPMEIVPIQPGEEVSIGNGCYVAPFPTAHRVPSQGYIIRDRRPRGLKPEYQGLAAAALKELRAATARTRPAGGGAEGAARDNGXXXXXXXXXXXXAGVEVGQLTDTVEVAFTGDTSFAPLLEQEEIWRAKILILEDAPRYASAVTSARGRVAMTYLDG--TLDGAVKWCHTHLSEVAASAHRFSGVRELIACHVTARKSRFDAMRLLRKALPRDLAERT 789
             H+FITHGH+DH GAI  HA  R    L PA            K  FE   E+ +  LP  IVP+Q  +EV I     V   PT HRVPS G+I+ +++ R LKPEY+   +A +  L+                                 AG E+     T EVA+TGDT+        +  R+K L+                 V  TY+D   T+D A+   HTHL ++AA    F  V  L+  H + R    + ++ ++  LP  L  +T
Sbjct:   47 SHIFITHGHIDHIGAIVIHAARRVLLKLAPAHYYVLASIVPHLKNLFESSAEMQDGPLPATIVPLQAFDEVHISAKYVVRAVPTKHRVPSLGFILYEKKNR-LKPEYKQFLSADIAALK--------------------------------RAGHEITNCELTPEVAYTGDTTIEVFTAASDDDRSKDLLY----------------VRATYVDSKMTVDDAIARGHTHLDQLAAHHQLFQNVGTLVLVHFSPRYQAKELIKCIQARLPPTLQHKT 273
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BLAST of jgi.p|Trimin1|354280 vs. uniprot
Match: A0A7S2XUF8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUF8_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 3.420e-18
Identity = 73/236 (30.93%), Postives = 106/236 (44.92%), Query Frame = 1 
Query:  139 LPMEIVPIQPGEEVSIGNGCYVAPFPTAHRVPSQGYIIRDRRPRGLKPEYQGLAAAALKELRAATARTRPAGGGAEGAARDNGXXXXXXXXXXXXAGVEVGQLTDTVEVAFTGDTSFAPLLEQEEI----WRAKILILEDAPRYASAVTSARGRVAMTYLD-GTLDGAVKWCHTHLSEVAASAHRFSGVRELIACHVTARKSRFDAMRLLRKALPRDLAERTSVMLRLFGADEEVT 831
            LP+++V ++PG+EV++G G     F T HRVPS GY++   R  GL PE+QGL    L  LR                                  GV++   T T EV +TGDT  A LL   E+    W AK+LILE                  TYL  G  + A K  H H+ ++   A       E++  H+++R  R + +  L + LP +L  +  V L+LFG  + +T
Sbjct:    6 LPVDLVGVEPGDEVAVGRGLTAQVFATQHRVPSVGYLLVSTRSGGLLPEFQGLPGPELGRLR--------------------------------REGVQITTQTRTTEVCYTGDTELACLLPPNEVAPLVWGAKMLILE-----------------ATYLQPGEEELARKHKHVHIQDLI-DARDLVQNDEVVLFHISSRYGRAEVISSLIECLPPELLPKVKVALKLFGEHDALT 191
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BLAST of jgi.p|Trimin1|354280 vs. uniprot
Match: G4ZQN2_PHYSP (Lactamase_B domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=G4ZQN2_PHYSP)

HSP 1 Score: 95.1 bits (235), Expect = 3.990e-18
Identity = 84/277 (30.32%), Postives = 117/277 (42.24%), Query Frame = 1 
Query:   10 EHVFITHGHLDHCGAIFTHARLRG--RDLP-----PAKAKGAFEEL--------GEDELPMEIVPIQPGEEVSIGNGCYVAPFPTAHRVPSQGYIIRDRRPRGLKPEYQGLAAAALKELRAATARTRPAGGGAEGAARDNGXXXXXXXXXXXXAGVEVGQLTDTVEVAFTGDTSFAPLLEQEEIWRAKILILEDAPRYASAVTSARGRVAMTYLDG--TLDGAVKWCHTHLSEVAASAHRFSGVRELIACHVTARKSRFDAMRLLRKALPRDLAERT 789
             HVFITHGH+DH GA+  HA  R   +  P     PA      E +        G++  P ++VP+Q  +EV +     V   PT HRVPS GYI+ ++R R LK EY+ L    +  L+                                 +G  +     T E+A+TGDT+        +  R + L+     R    +T A      TY DG  T+  AV   H HL ++A   H F  V  L+  H +AR S  D    +R  LP  L E+T
Sbjct:   47 SHVFITHGHVDHIGALVAHAARRALQKQKPAQYFVPAHLVPHLESILQSTAAMQGDEPFPAQLVPLQAYDEVHVSPKYMVRAVPTTHRVPSLGYILFEKRNR-LKSEYRELPGPEIAALK--------------------------------RSGQTITSAELTPEIAYTGDTTIEAFTAASDDERMRDLL-----RVKVLITEA------TYADGKMTVQDAVARGHMHLDQLAEHEHLFQRVGTLVLVHFSARYSADDLAECVRTRLPPTLQEKT 279
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BLAST of jgi.p|Trimin1|354280 vs. uniprot
Match: A0A225VIM1_9STRA (Nuclear ribonuclease Z n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VIM1_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 4.580e-17
Identity = 81/277 (29.24%), Postives = 120/277 (43.32%), Query Frame = 1 
Query:   10 EHVFITHGHLDHCGAIFTHARLRG--RDLP-----PAKAKGAFEEL--------GEDELPMEIVPIQPGEEVSIGNGCYVAPFPTAHRVPSQGYIIRDRRPRGLKPEYQGLAAAALKELRAATARTRPAGGGAEGAARDNGXXXXXXXXXXXXAGVEVGQLTDTVEVAFTGDTSFAPLLEQEEIWRAKILILEDAPRYASAVTSARGRVAMTYLDG--TLDGAVKWCHTHLSEVAASAHRFSGVRELIACHVTARKSRFDAMRLLRKALPRDLAERT 789
             HVFITHGH+DH GA+ THA  R   +  P     PA      + +        G++  P  IVP++  +EV + +   V   PT HRVPS GYI+ +++ R LKPEY+ L+   L  L+                                 AG E+     + E+A+TGDT+        +  R K L+     +    +T A      TY+D   T+  AV   H HL +++   H F  V  L+  H +AR S  +    +R  L   L ++T
Sbjct:   47 SHVFITHGHVDHIGAVVTHAARRALQKQKPAQYFVPAYLVPHLQSILQSTAAMQGDEPFPARIVPLEAFDEVHVSSKYMVRAVPTKHRVPSLGYILYEKKNR-LKPEYKQLSGQELGALK--------------------------------RAGQEITSAELSPEIAYTGDTTIEAFTVAADDERTKDLL-----QVKVLITEA------TYVDSKMTIHDAVARGHMHLDQLSMHEHLFQHVNTLVLVHFSARYSAEELAENVRTRLSPSLQQKT 279
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BLAST of jgi.p|Trimin1|354280 vs. uniprot
Match: W2Q9Z8_PHYPN (Lactamase_B domain-containing protein n=19 Tax=Phytophthora TaxID=4783 RepID=W2Q9Z8_PHYPN)

HSP 1 Score: 91.3 bits (225), Expect = 8.990e-17
Identity = 83/277 (29.96%), Postives = 117/277 (42.24%), Query Frame = 1 
Query:   10 EHVFITHGHLDHCGAIFTHARLRG--RDLP-----PAKAKGAFEEL--------GEDELPMEIVPIQPGEEVSIGNGCYVAPFPTAHRVPSQGYIIRDRRPRGLKPEYQGLAAAALKELRAATARTRPAGGGAEGAARDNGXXXXXXXXXXXXAGVEVGQLTDTVEVAFTGDTSFAPLLEQEEIWRAKILILEDAPRYASAVTSARGRVAMTYLDG--TLDGAVKWCHTHLSEVAASAHRFSGVRELIACHVTARKSRFDAMRLLRKALPRDLAERT 789
             HVFITHGH+DH GA+  HA  R   +  P     PA      E +        G+   P +IVP+Q  +EV I     V   PT HRVPS GYI+ +++ R LKPEY+ L  A +  L+                                 AG E+     T E+A+TGDT+        +  R K L+     +    +T A      TY D   T+  AV   H HL ++A   + F  V  L+  H +AR S  +    ++  LP+    +T
Sbjct:   51 SHVFITHGHVDHIGAVVAHAARRALQKQKPASYFVPAHLAPHLESILESTAAMQGDAPFPAKIVPLQAFDEVHISAKYLVRAVPTKHRVPSLGYILYEKKNR-LKPEYRQLPGAEIAALK--------------------------------RAGKEITSAELTPEIAYTGDTTIEAFTTAADDERTKDLL-----QVKVLITEA------TYTDSKMTIQDAVARGHMHLDQLAIHENLFQRVGTLVLVHFSARYSAEELAECIQTRLPQSQQVKT 283
[Close]
BLAST of jgi.p|Trimin1|354280 vs. uniprot
Match: A0A4P5VUI2_9DELT (Lactamase_B domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A4P5VUI2_9DELT)

HSP 1 Score: 90.5 bits (223), Expect = 1.260e-16
Identity = 79/277 (28.52%), Postives = 121/277 (43.68%), Query Frame = 1 
Query:   16 VFITHGHLDHCGAIFTHARLRG--RDLPPA------------KAKGAFEELGEDELPMEIVPIQPGEEVSIGNGCYVAPFPTAHRVPSQGYIIRDRRPRGLKPEYQGLAAAALKELRAATARTRPAGGGAEGAARDNGXXXXXXXXXXXXAGVEVGQLTDTVEVAFTGDTSFAPLLEQEEIWR-AKILILEDAPRYASAVTSARGRVAMTYLDGTLDGAVKWCHTHLSEVAASAHRFSGVRELIACHVTARKSRFDAMRLLRKALPRDLAERTSVML 801
            + +TH H+DH G I  HA  R   +  PP                  +  L   +LP++I+P  PG+ + +G G    PF + HRVP QGY +   + R L+ +  GL+ A ++ +RA                                 G  V + T+TVE+AFTGDT    ++E+EE+ R A++LI+E         T    RV +    G+        H HL E+   AH       L+  H +AR S       LR+ LPR+L E+ + ++
Sbjct:   44 ILLTHTHMDHAGGIAYHAATRDLYKVAPPTWYVPRENVTDLHALLEVWRRLDGSDLPVDIIPCGPGDALDLGGGWVAKPFRSPHRVPCQGYALCRTKTR-LRADLVGLSEAEIRAIRA--------------------------------TGAPVSEATETVEIAFTGDT-LPEVIEREELVRKARLLIME--------CTFVDDRVPVEKARGS-------GHVHLDELVERAHLLENEAVLLT-HFSARYSGAHVRDALRQRLPRELWEKVTALV 270
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354280 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z2Q2_9STRA2.140e-183100.00Beta-lactamase-like protein n=1 Tax=Tribonema minu... [more]
D8LB62_ECTSI1.040e-2933.45Metallo-beta-lactamase superfamily protein n=2 Tax... [more]
A0A4D9D594_9STRA4.620e-2631.40Lactamase_B domain-containing protein n=2 Tax=Mono... [more]
A0A0U9HQI1_KLENI6.840e-1929.12tRNAse Z1 n=1 Tax=Klebsormidium nitens TaxID=10523... [more]
A0A484DTJ7_BRELC1.430e-1830.80Lactamase_B domain-containing protein n=1 Tax=Brem... [more]
A0A7S2XUF8_9STRA3.420e-1830.93Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
G4ZQN2_PHYSP3.990e-1830.32Lactamase_B domain-containing protein n=3 Tax=Phyt... [more]
A0A225VIM1_9STRA4.580e-1729.24Nuclear ribonuclease Z n=1 Tax=Phytophthora megaka... [more]
W2Q9Z8_PHYPN8.990e-1729.96Lactamase_B domain-containing protein n=19 Tax=Phy... [more]
A0A4P5VUI2_9DELT1.260e-1628.52Lactamase_B domain-containing protein n=1 Tax=Delt... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_225contigContig_225:76725..83591 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|354280|estExt_Genemark1.C_Ctg_2250011
CAZyGH76
BRITEko00000,ko00537,ko01000,ko04147
KEGG koko:K08257,ko:K17299
EC3.2.1.101
Descriptionprotein ubiquitination
COG categoryI
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0666@1|root,KOG0504@2759|Eukaryota
Evalue3.76e-32
Seed ortholog2880.D8LB62
Hectar predicted targeting categoryother localisation
TranscriptId354602
TrackFilteredModels1
ProteinId354280
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354280gene_17673Tribonema minus UTEX_B_3156 geneContig_225 76725..83591 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354280Trimin1|354280|estExt_Genemark1.C_Ctg_2250011Tribonema minus UTEX_B_3156 polypeptideContig_225 76725..82977 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17673_1exon_17673_1Tribonema minus UTEX_B_3156 exonContig_225 76725..76825 +
exon_17673_2exon_17673_2Tribonema minus UTEX_B_3156 exonContig_225 77377..77452 +
exon_17673_3exon_17673_3Tribonema minus UTEX_B_3156 exonContig_225 78574..78687 +
exon_17673_4exon_17673_4Tribonema minus UTEX_B_3156 exonContig_225 79461..79512 +
exon_17673_5exon_17673_5Tribonema minus UTEX_B_3156 exonContig_225 79667..79710 +
exon_17673_6exon_17673_6Tribonema minus UTEX_B_3156 exonContig_225 79830..79985 +
exon_17673_7exon_17673_7Tribonema minus UTEX_B_3156 exonContig_225 80518..80568 +
exon_17673_8exon_17673_8Tribonema minus UTEX_B_3156 exonContig_225 81064..81207 +
exon_17673_9exon_17673_9Tribonema minus UTEX_B_3156 exonContig_225 82616..82711 +
exon_17673_10exon_17673_10Tribonema minus UTEX_B_3156 exonContig_225 82861..83591 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17673CDS_17673Tribonema minus UTEX_B_3156 CDSContig_225 76725..76825 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_17673UTR3_17673Tribonema minus UTEX_B_3156 three_prime_UTRContig_225 82978..83591 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17673 ID=mRNA_17673|Name=jgi.p|Trimin1|354280|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1565bp|location=Sequence derived from alignment at Contig_225:76725..83591+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGTCGAACACGTGTTCATCACGCACGGCCACTTAGACCACTGCGG
CGCGATATTCACGCACGCGCGACTGAGGGGGCGCGACCTGCCCCCCGCCA
AGGCGAAGGGCGCGTTTGAGGAGCTCGGAGAGGACGAGCTGCCCATGGAG
ATTGTGCCCATACAGCCCGGCGAGGAGGTGTCCATAGGTAACGGCTGCTA
CGTGGCGCCATTCCCCACCGCGCACCGCGTGCCGAGCCAGGGCTACATCA
TCCGCGACCGTAGGCCGCGCGGCCTGAAACCCGAGTACCAGGGCCTGGCA
GCGGCGGCGCTCAAGGAGCTGCGCGCGGCGACGGCACGCACTCGGCCTGC
CGGCGGCGGCGCTGAAGGAGCTGCGCGCGACAACGGCGGCCTGCCGACGG
CGGCGCTGAAGGAGCTGCGCGCGGCGGGCGTGGAGGTCGGGCAGCTGACG
GACACGGTGGAGGTGGCGTTCACGGGCGACACGAGCTTCGCGCCGCTGCT
CGAGCAGGAGGAGATCTGGCGCGCCAAGATCCTCATACTGGAGGACGCGC
CACGCTACGCGTCGGCCGTAACGAGCGCACGCGGTCGTGTCGCCATGACG
TACCTCGACGGCACCCTCGACGGCGCCGTCAAGTGGTGCCACACGCACCT
GAGCGAGGTGGCCGCGAGCGCGCACCGCTTTAGCGGCGTGCGCGAGCTCA
TTGCGTGCCACGTCACCGCCAGAAAGAGCAGATTCGACGCGATGCGGCTG
CTGCGCAAGGCGCTGCCGCGGGACCTCGCCGAGCGCACGAGCGTCATGCT
GCGCCTCTTCGGCGCCGACGAAGAGGTCACGCGCGCCGTGCGGCTGCTGC
GCGAGGCGCTGCCGCGGGACCTCGCCGCGCGCACGGGCGTCATGCTGCGC
CTCTTCGGCGCGGACGAGGCGGTCACGCCCGTGTGCGACCCGGCGTCCTG
ACGCCAGCGGGGGGGGCCGCGCGCCGACCGCGCCATCGGAAAGCGCGCGC
TCCTCCTCCTGCACGCACCCACCCGCTCACGCCGCCGCCACCCGAGAGGC
TGCGCCGGCGCCGCGGCAGCTGATTCTGTCTGACGCGTCAGCTGACTGGG
CAGGGCGTCCCTCGGGGCCAAGTCGTCCAGTGAGCGGGGACAGAAGAAAA
AGGCGCCGCCCGCGTGTGCGTAGCGCCTGTGTGCGATGCGCAGGACGCGC
GCAAAATGGCATGCCGCTGCGGAGCGCTGCTGCGGCACTTGCCTTCGCCT
GTTTACGCCTGCTGCGGCTCGCGGCAATGGTCAGGGCTGGCAGAGATGCC
CCCCCCCTCTGCGCTGCCAGCGCACGGCGGGAGCGAAGCGCTTGCTGACG
ACAGCATGTATGGAGAGGGCGGCAGCGCCATGGGGCAGCGGCGGCAGCGT
TGCCGTCAACATGCAGCCCAGCAGTGCCGCCAGGGGCACTGCCAACGTTC
CCATCACACATCGTCGGTGCGTCATACAGGGGCTGTGCCAGAGGCACAGG
CACAGCATAGACAGCATACGAGCTGCCTCTCAATCTCACGTCAAAAGCGC
GCATGCTGCTGTGGG
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protein sequence of jgi.p|Trimin1|354280

>Trimin1|354280|estExt_Genemark1.C_Ctg_2250011 ID=Trimin1|354280|estExt_Genemark1.C_Ctg_2250011|Name=jgi.p|Trimin1|354280|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=317bp
MGVEHVFITHGHLDHCGAIFTHARLRGRDLPPAKAKGAFEELGEDELPME
IVPIQPGEEVSIGNGCYVAPFPTAHRVPSQGYIIRDRRPRGLKPEYQGLA
AAALKELRAATARTRPAGGGAEGAARDNGGLPTAALKELRAAGVEVGQLT
DTVEVAFTGDTSFAPLLEQEEIWRAKILILEDAPRYASAVTSARGRVAMT
YLDGTLDGAVKWCHTHLSEVAASAHRFSGVRELIACHVTARKSRFDAMRL
LRKALPRDLAERTSVMLRLFGADEEVTRAVRLLREALPRDLAARTGVMLR
LFGADEAVTPVCDPAS*
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mRNA from alignment at Contig_225:76725..83591+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17673 ID=mRNA_17673|Name=jgi.p|Trimin1|354280|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=6867bp|location=Sequence derived from alignment at Contig_225:76725..83591+ (Tribonema minus UTEX_B_3156 )
ATGGGCGTCGAACACGTGTTCATCACGCACGGCCACTTAGACCACTGCGG
CGCGATATTCACGCACGCGCGACTGAGGGGGCGCGACCTGCCCCCCGCCA
AGTACTACATGAACCCGCAAATCGTGCCCGCAATGCTGAGGTAATCGGAC
CATGTGCAGTTGCGCTTTGTACAGGCACACATGCGCACGCATACGGCCTG
CCTGACGTGTTTTGCTGGTTGGTGCATGGTGGCAAGCACTTCCATGCCGC
TGAGGGCATGTGCCCGGGATGAGCCTCCACCATTGCCAGCGCGCCAGACG
CGTCGCTGTTGGAGACATCCTGCGAGAGAGTGCTATGAGACTGAAGCAGC
GTGAGGCGAGTGCCGCACGACACGAGTGGTCTTGTGCACCGTTGGCGTGG
GGCGCGCGCGCTTATCCTGACCCTAACTTCAACCCTGACATCGCCCCGTC
TGCAGGGCGCCGCGGCAGTTGCGCGGCCACCCACACTATGCTGATGAAGC
CAACTTCAACTGTTGTGCCATGCTACTTCAAGAATAGTGGCGTGCTGCCA
TGCAGTGGTCTGCGGCGCGGTGCGTCACGCGCGCGCACCTCAATGTTGAA
GTTACCGGACTGCGCCGCTCGTCGTGCCTGTGCTGCGTGCCTGCCTCCCC
AGGGCGAAGGGCGCGTTTGAGGAGCTCGGAGAGGACGAGCTGCCCATGGA
GATTGTGCCCATACAGCCCGGCGAGGAGGTGCGTACACTCCAACTTCAAC
TGAGGAGCAGCGGCGACCGAGAAGAAGACCGAACTCAATGCGAGGTCAAC
AATATATTGACGCCTGAAGAAGCTGCTGGAAGGACGATGCTGTGAGCTTC
AGTGGCTCACGAGGACCCGGATCGTTGGTGGCGATCCTGTAGATTCTGCG
CGTACACGGAGGACCACATAGCCGCCGCTGCAGCACACGTGGCCGGCCCT
CTCTGGCGTGGCGTCAGCAGCACTGATGCGCGTCCCTCCGCAGCTGACAG
GCACAGCCCGTGGGTGAGCGTTAGGGTTAGGCTAGCCCTAAGCCGCCGGG
CGCCGACCGTTGCGCTCGACCCTACCGCACTTTGAGCGCTGCACGTCACC
GGCGCTGCGCTCTCGAGGCCACGACTTGCACCTGTCCTGCCACATGCACT
TGGAGACCCTCACCCCTCAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAG
GGTTAGAAGTGCAAGGGAGGGCCTTTATTGTGCTCCTCAGATGTAGTTAC
TGCCTGAGCCATACGCACACGTGCGAAGGGCGCGGCGGCGGCCTGCACAT
GTGCTGCAAGAGAGACGCCGCGTCTATGCCGCCACTGGCGCTCGCGCTCG
CCCGCGCGCCGCGGTTAGGGTTACGGTTAGAAAATGGATTAGGGTTCGGG
TTACGCCCTCGCTCGCCCGCGCGCCGCGGTGAGGTTTTCGGTTAGAAAAT
GGATTAGGATTAGGGTTAGGGTTAGGATTAGGGCCGCCCGCCGGCGCGCG
CACCACCATGACAGCGAGCCGCGAACACCTCGTGGGGGCTGCATGCGCAG
CGCGTGCTGCCCTCGCCGCCGGCACTCGCGCGTGCGCCGCAGTTGCTCGG
TGCCTGCGCTCGTGTGCGCGCCGCGATTAGGGTTAGGGTTAAGGGTTAGG
GTTTAGGGCTGCCCGCCGGCACGCCGCGTTGACGCGACACCGAGCCACAA
ACACACACCTCCAGGGCCGCATGCGCCCTTAGCGCTAGGATTAGGGTCAG
GGCGCGCTCACCTTCTTATCCCCAAGCGCTCACCGCGCTCGATGACGCAC
GCGTTGCCCCCCACCCCCCCCCGCCCCCCCGCCCCCCCCGCGGTGGCAGG
TGTCCATAGGTAACGGCTGCTACGTGGCGCCATTCCCCACCGCGCACCGC
GTGCCGAGCCAGGGCTACATCATCCGCGACCGTAGGCCGCGCGGCCTGAA
ACCCGAGTACCAGGTGCGAGCGCGCGCGCACGTGTGTGCACCCCTGCATA
CCTACCCTTTGTTGTGCTTTGAAAGTATGCATGCGCTCGCGTGCGCGGCG
CGCGGGGCCAGAGCCCTAGTACTAGGTGCGCGCGCGCGCATATGACGAAG
GTGGTGTGGGAGCATCTTCCATCCATAAGATTCAGCTATACCAAAAGTGG
GGGGGTGCCAGAGGTGAGCCGCAACTTCTTTGAAGCACCTTTGATTGCGC
AGTGAACTGTGCACCTCTGCGTACCTACCCCCTTTGGTGTGCTCTGGAGA
TTATACATGCCCTTGTCCACGCAAGCCGAAGCCCGCGCAGTGGACGCGCG
CCGCTGCTCGCTGTGTGTGCTGCGCACAGCGCGGTGGGGCTGTTTGCTGC
GGCGGCTGCGCACGGCGACGGCACGCGCTCGTCATCATCACTTGAAGTTC
AGCCGTTCATCATTACTTGAAGTTCAGCTGTCATCATTACCTGAAATTCT
AGCTCAACGTGCTTAGGCAAGCCGCGCAGCATCTCAGCGACGTCCTCGCA
GACCGTTCGCGAGTTGTGTGCTGCTTCCCCTGCGCTGCTGTCATCATGCG
CGGCGGCAGGGCCTGGCGGCGGCGGCGCTGAAGGAGCTGCGCGCGGCGAC
GGCGCGCACTCGTCATACCATCCCTTGAAGTTCAGCTCTCGTCATCACTT
GAAGCTCAGCGGTTGTCGTCACTTGAAGTTCAGCTGTTGATCAATACTGG
AAGTTAGCCCTGCGCTGCTGCCGTCGTGCACGGCAGGGCCTGGCAGCGGC
GGCGCTCAAGGAGCTGCGCGCGGCGACGGCACGCACTCGTCATCATCACT
TGAAGTTCAGCTGTTGATCACTACTTACCTGAGGTTCTAGCTCGGCGTTG
AACCGTGAAGCGACGTCCTCACAGACCGTGCGCGTGTACGCGCTTCGTGC
GCTGCTTCCCCCCTGCGCTGCCGCCGTCATGCGCGGCGGCAGGGCCTGCC
GGCGGCGGCGCTGAAGGAGCTGCGCGCGACAACGGCGTACTTGTCATCAA
TGATGTAGTGTTGCGTCGAGCTGCACGGCTTTGCAGCAACGTCCTCATGG
ACCGTGTACGCGCATTCCTTCTCTCCTGCGCTGCTGCTATCATGCGCGGC
GGCAGGGCCTGCCGACGGCGGCGCTGAAGGAGCTGCGCGCGGCGGGCGTG
GAGGTCGGGCAGCTGACGGACACGGTGGAGGTGGCGTTCACGGGCGACAC
GAGCTTCGCGCCGCTGCTCGAGCAGGAGGAGATCTGGCGCGCCAAGATCC
TCATACTGGAGGTGACTGCGTGCGCGCGTGCGTATGTGACTGATTGAGGT
GGAACGTGGATGCATGTGATCCGCCGCGTCAAATTCCAAGGTCCCCATTG
CGTACGCACGCGTATCCGCTGCTGAGCATCTCGGTGCAGTAGGAGGTCGT
GTGCGGCCTGGTATGGGCACGCTCTCTTTTTCATTCCGGTGCAACAGTTC
ACGTGTGCTGTGGAGCGCTGTGGATGCGTGTCAACCACGCTCAGCCGCGG
GCGCGTTGGAGTGCGTCATGTGGCACGCATGGCTCTCATGGCACCCGCAC
TGGCGCTGTGGCTGAGAGGGACCGGCAGCTATGTCGCTGCCGCTAGAACA
CCAGGCGGTCGAGGGCGCGCAGAGATGCTGCTAGATGCGCTGCGCCGATC
GCGACGCAGTAGGTAATCACGGGTCCATGTGCTTCAAGTACAGGTGTGAC
GTGCCTTCATGCGGCAGCGCTCAACAACGGCGCGGTGAAGCAGCTCCAAT
CGCGCTCGGACGGCAGCGGCGCGCGCGCCACCCTCGCGCGCAGGACGCGC
CACGCTACGCGTCGGCCGTAACGAGCGCACGCGGTCGTGTCGCCGTGAGC
GACGAAGCGCATGTTCCTGTCCGTTCATACCCGTTGCAGCCGGACGTGCG
GGCCTGATCAGGACGATGCACGTGTCGTCACCGTCGCGGCGCCTCTCGTC
CGTCGGCGCGCGCGTCTCGCGCTAGCCGCAACCCTAGCCCTTGTAGATGA
CGCATCTCGATGAACGGCGCGTTACGGCCAGACTTGACGACGATGAGCGC
GCGTCTGCGTCGTGGCGCTGCGCATGAACGAAGTGGCGCCTCAGCATTCA
TCGGCGCGCAGGCAAACCCCACATAGTCCTAGCCTCAACGCTGCCCCTCG
CCCTGAGTCTTGCAGACGGCGCGTCTCAATCCACCGCCGCCTTATGGTCA
GACTTGATTCAAACAATAACTTAAGCCTTGACCATAACCTCAAGCCCAAC
TTCAACCCTCAGAGATGACCGCAATTTCAACCCCCAACTTCAACCCTTGC
AGATGACCGTAACCTCGACCCCAACTTCAACTCTTGCAGATGACGTACCT
CGACGGCACCCTCGACGGCGCCGTCAAGTGGTGCCACACGCACCTGAGCG
AGGTGGCCGCGAGCGCGCACCGCTTTAGCGGCGTGCGCGAGCTCATTGCG
TGCCACGTCACCGCCAGAAAGAGCAGATTCGACGTGAGTGAGAGCTGGTT
TCAGAGCTTGCAGAGGTGATGCACGAAGGCGTCATTGATGAGCCTGTGCG
GTGAATGCAAGGAATGCGTTGTGCGCGACGACGAAGCGCTTCAAATCCTG
CGAGTACTCCTTGAAGTACGTCAAAGTACATGAATCCATTCACGACGTGT
GCGCGAGCTCATCGCGTGACCGTGTCACCGCCAAGAGGAGCAGATACGAG
GTACGCCGGCCTTACGGTTTGTAGAGATGATGCCCAAGGTGTCATTAATG
AGCCTCAACGATGAATGCACGAGCGTTTTGTAAGGTGTAGAGTACTTCAG
CGTCTGCAACAACCTGATGAAAGCTACACTTGCAAGTTTTCGCAAGACAC
GTGTAGATTCAGCTGACAGCACGTTGGACATCTACCACCTGGGCGTCCTC
ACTCCCTCAGCCAGAACTTATTCATAACAAGTACATGAGTCTTTTCCAAG
ACGGGACAAGTGTGCCTCACGGCTGGGCAACCCCAAGTAGGGTTTGGTTG
TGGGGTGTTGGTAGTGTGAAGCGGGGGAAGCCTGTTTGCGTTTGACTCTC
TCTTCGAAGAAGGAATGTCGCATTGAGTGCACATCCAAAAAGAGGGGGCT
TTTCACGCCCCCATGCAGCAAAGCGAAATAGATAAGAGTACATGAGTCGA
TTTGAGGGCGCGCACGCTCATCGTGCTAACCCTAGCCCTAAAAAACGCAC
GCCACCGCCAGGAATGGCGCAGGCACAAGGTGAGCTGGCGGGTCGCATAG
ACAAGAGGCGCACAAAGTGATGATGACGGAGGATGGCTTTCCGAATGACA
TGCGCGCGTTTGAAGCGCGCCTTAGATCACACTTGCTCCGCCCAAGCACA
GCTGGAGTTTGGAAAAAGTCTTTGGCCCGACGGGATCACTCGCGACAGAA
CGCTGATGGCGTCCGCCGCCTCCGCAGCTGCTTGCTGCGCTCGCCCGCGG
CGTGCCCATCTTAGAGTCTCCGCCCGACGCGGCGCGCATCGCCGCGCGCA
TCGCATCACCATGAGCAGAGTCGCTGCGTTGCGCGTCGCGCGCCCCCCCG
GGCGCCGCTGCACGGCACGCGCCCGTTCCTCGGCGCTCACACGTCCGCCG
TCGACAAGACAGCGACGCTCAGCAGACCTGCTCACCGCGCCGCTCCGCCC
GCGCCACGCCGCTCCATCTGCCGCGCAGGCGGCGCAGCGCCGCTCGGCAA
ACCCTCACCATGCCGCTCTGCCCGCGCCGCGCGCTGTGTTGCGCATCGCA
GCCCCCCAGGCACGGCGCACTGCATGCGCGCTTTCGTCGCCGTTCACACT
TCTGCCGTCGTCGGCAGCGACGCTCAGCGCAAACCCTCACCGCTCAGCAA
CTCCTCATGCCGCTCTGTCCGCGCCGCGCTGCATTGCGTAGGCGATGCGG
CTGCTGCGCAAGGCGCTGCCGCGGGACCTCGCCGAGCGCACGAGCGTCAT
GCTGCGCCTCTTCGGCGCCGACGAAGAGGTCACGCGCGTGCGCAGACGCT
ACCGCACTGCGCGCCCGCGTCGCCCTTCAAGCTCCTGCCGTCGACGGCAG
CGCCGCCCAGCAGCGCAAACGCTCACCGCTCAGTGACTCTCGTCGTGCTG
CTCTGCCCGCGTGCCGCACCGCGCTGCATTGCGCAGGCCGTGCGGCTGCT
GCGCGAGGCGCTGCCGCGGGACCTCGCCGCGCGCACGGGCGTCATGCTGC
GCCTCTTCGGCGCGGACGAGGCGGTCACGCCCGTGTGCGACCCGGCGTCC
TGACGCCAGCGGGGGGGGCCGCGCGCCGACCGCGCCATCGGAAAGCGCGC
GCTCCTCCTCCTGCACGCACCCACCCGCTCACGCCGCCGCCACCCGAGAG
GCTGCGCCGGCGCCGCGGCAGCTGATTCTGTCTGACGCGTCAGCTGACTG
GGCAGGGCGTCCCTCGGGGCCAAGTCGTCCAGTGAGCGGGGACAGAAGAA
AAAGGCGCCGCCCGCGTGTGCGTAGCGCCTGTGTGCGATGCGCAGGACGC
GCGCAAAATGGCATGCCGCTGCGGAGCGCTGCTGCGGCACTTGCCTTCGC
CTGTTTACGCCTGCTGCGGCTCGCGGCAATGGTCAGGGCTGGCAGAGATG
CCCCCCCCCTCTGCGCTGCCAGCGCACGGCGGGAGCGAAGCGCTTGCTGA
CGACAGCATGTATGGAGAGGGCGGCAGCGCCATGGGGCAGCGGCGGCAGC
GTTGCCGTCAACATGCAGCCCAGCAGTGCCGCCAGGGGCACTGCCAACGT
TCCCATCACACATCGTCGGTGCGTCATACAGGGGCTGTGCCAGAGGCACA
GGCACAGCATAGACAGCATACGAGCTGCCTCTCAATCTCACGTCAAAAGC
GCGCATGCTGCTGTGGG
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Coding sequence (CDS) from alignment at Contig_225:76725..83591+

>mRNA_17673 ID=mRNA_17673|Name=jgi.p|Trimin1|354280|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=951bp|location=Sequence derived from alignment at Contig_225:76725..83591+ (Tribonema minus UTEX_B_3156 )
ATGGGCGTCGAACACGTGTTCATCACGCACGGCCACTTAGACCACTGCGG
CGCGATATTCACGCACGCGCGACTGAGGGGGCGCGACCTGCCCCCCGCCA
AGGCGAAGGGCGCGTTTGAGGAGCTCGGAGAGGACGAGCTGCCCATGGAG
ATTGTGCCCATACAGCCCGGCGAGGAGGTGTCCATAGGTAACGGCTGCTA
CGTGGCGCCATTCCCCACCGCGCACCGCGTGCCGAGCCAGGGCTACATCA
TCCGCGACCGTAGGCCGCGCGGCCTGAAACCCGAGTACCAGGGCCTGGCA
GCGGCGGCGCTCAAGGAGCTGCGCGCGGCGACGGCACGCACTCGGCCTGC
CGGCGGCGGCGCTGAAGGAGCTGCGCGCGACAACGGCGGCCTGCCGACGG
CGGCGCTGAAGGAGCTGCGCGCGGCGGGCGTGGAGGTCGGGCAGCTGACG
GACACGGTGGAGGTGGCGTTCACGGGCGACACGAGCTTCGCGCCGCTGCT
CGAGCAGGAGGAGATCTGGCGCGCCAAGATCCTCATACTGGAGGACGCGC
CACGCTACGCGTCGGCCGTAACGAGCGCACGCGGTCGTGTCGCCATGACG
TACCTCGACGGCACCCTCGACGGCGCCGTCAAGTGGTGCCACACGCACCT
GAGCGAGGTGGCCGCGAGCGCGCACCGCTTTAGCGGCGTGCGCGAGCTCA
TTGCGTGCCACGTCACCGCCAGAAAGAGCAGATTCGACGCGATGCGGCTG
CTGCGCAAGGCGCTGCCGCGGGACCTCGCCGAGCGCACGAGCGTCATGCT
GCGCCTCTTCGGCGCCGACGAAGAGGTCACGCGCGCCGTGCGGCTGCTGC
GCGAGGCGCTGCCGCGGGACCTCGCCGCGCGCACGGGCGTCATGCTGCGC
CTCTTCGGCGCGGACGAGGCGGTCACGCCCGTGTGCGACCCGGCGTCCTG
A
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