mRNA_17667 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|138859
Unique NamemRNA_17667
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|138859 vs. uniprot
Match: A0A836CH91_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH91_9STRA)

HSP 1 Score: 117 bits (294), Expect = 6.400e-34
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 1 
Query:    1 MPRGVKKSDLPFKICTICNRPFNWRKKWESCWDEVTTCSKSCNSARRKVK 150
            MPRGVKKSDLPFKICTICNRPFNWRKKWESCWDEVTTCSKSCNSARRKVK
Sbjct:    1 MPRGVKKSDLPFKICTICNRPFNWRKKWESCWDEVTTCSKSCNSARRKVK 50
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BLAST of jgi.p|Trimin1|138859 vs. uniprot
Match: A0A7S0W7F5_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W7F5_9CRYP)

HSP 1 Score: 96.7 bits (239), Expect = 2.910e-24
Identity = 38/50 (76.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    1 MPRGVKKSDLPFKICTICNRPFNWRKKWESCWDEVTTCSKSCNSARRKVK 150
            MP GVKK +LP K+C  CNRPF WRKKWE CWDEVTTCSKSCN+ RRK K
Sbjct:   97 MPNGVKKENLPTKVCVTCNRPFTWRKKWEKCWDEVTTCSKSCNAQRRKAK 146
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BLAST of jgi.p|Trimin1|138859 vs. uniprot
Match: A0A1Z5K3C1_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K3C1_FISSO)

HSP 1 Score: 96.3 bits (238), Expect = 1.980e-23
Identity = 39/47 (82.98%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:    1 MPRGVKKSDLPFKICTICNRPFNWRKKWESCWDEVTTCSKSCNSARR 141
            MPRGVKK  LP KIC +C+RPFNWRKKWESCWDEVTTCSKSCN  RR
Sbjct:    1 MPRGVKKEHLPSKICVMCHRPFNWRKKWESCWDEVTTCSKSCNRQRR 47
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BLAST of jgi.p|Trimin1|138859 vs. uniprot
Match: A0A7S0GXJ7_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0GXJ7_MICPS)

HSP 1 Score: 93.2 bits (230), Expect = 5.500e-22
Identity = 36/48 (75.00%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:    7 RGVKKSDLPFKICTICNRPFNWRKKWESCWDEVTTCSKSCNSARRKVK 150
            RGVKK +LP K+C +C+RPF WRKKWE CWDEVTTCSKSCN+ARR+ K
Sbjct:   66 RGVKKENLPTKVCVVCDRPFTWRKKWERCWDEVTTCSKSCNAARRREK 113
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BLAST of jgi.p|Trimin1|138859 vs. uniprot
Match: K8EHJ5_9CHLO (Uncharacterized protein n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8EHJ5_9CHLO)

HSP 1 Score: 90.5 bits (223), Expect = 7.650e-22
Identity = 35/50 (70.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 MPRGVKKSDLPFKICTICNRPFNWRKKWESCWDEVTTCSKSCNSARRKVK 150
            MP  VKK +LP K+C +CNRPF WRKKWE CWDEVTTCSKSCN  R++ K
Sbjct:    1 MPANVKKENLPEKVCVVCNRPFTWRKKWERCWDEVTTCSKSCNVKRKREK 50
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BLAST of jgi.p|Trimin1|138859 vs. uniprot
Match: B8BYZ3_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BYZ3_THAPS)

HSP 1 Score: 91.7 bits (226), Expect = 1.440e-21
Identity = 34/48 (70.83%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    1 MPRGVKKSDLPFKICTICNRPFNWRKKWESCWDEVTTCSKSCNSARRK 144
            MPRG+KK +LP K+C +C+RPF WRKKWE CWDEVTTCSKSCN  R++
Sbjct:    1 MPRGIKKENLPSKLCVVCDRPFTWRKKWERCWDEVTTCSKSCNRKRKE 48
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BLAST of jgi.p|Trimin1|138859 vs. uniprot
Match: A0A7S2T0B9_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A7S2T0B9_9CHLO)

HSP 1 Score: 87.0 bits (214), Expect = 4.380e-21
Identity = 32/50 (64.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 MPRGVKKSDLPFKICTICNRPFNWRKKWESCWDEVTTCSKSCNSARRKVK 150
            MPRGVKK +LP K+C +CNRPF WRKKWE CW+EV TCS+ C + R++ K
Sbjct:   52 MPRGVKKENLPTKVCVVCNRPFTWRKKWERCWEEVQTCSERCKNERKRSK 101
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BLAST of jgi.p|Trimin1|138859 vs. uniprot
Match: A4S0N5_OSTLU (Uncharacterized protein n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S0N5_OSTLU)

HSP 1 Score: 88.6 bits (218), Expect = 5.300e-21
Identity = 33/45 (73.33%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    7 RGVKKSDLPFKICTICNRPFNWRKKWESCWDEVTTCSKSCNSARR 141
            RGVKK +LP K+C +C+RPF WRKKWE+CWDEVTTCSKSCN  R+
Sbjct:    2 RGVKKENLPSKVCVVCDRPFTWRKKWENCWDEVTTCSKSCNGKRK 46
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BLAST of jgi.p|Trimin1|138859 vs. uniprot
Match: UPI0016891602 (DUF2256 domain-containing protein n=1 Tax=Microcoleus sp. FACHB-1515 TaxID=2692821 RepID=UPI0016891602)

HSP 1 Score: 85.1 bits (209), Expect = 6.570e-21
Identity = 34/50 (68.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    1 MPRGVKKSDLPFKICTICNRPFNWRKKWESCWDEVTTCSKSCNSARRKVK 150
            MPRGVKKSDLP KIC +C RPF WRKKWE+CWDEV  CS  C   R + K
Sbjct:    1 MPRGVKKSDLPTKICPVCQRPFTWRKKWENCWDEVKYCSDRCRRHRTEAK 50
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BLAST of jgi.p|Trimin1|138859 vs. uniprot
Match: A0A6P0QLC2_9CYAN (DUF2256 domain-containing protein n=1 Tax=Microcoleus sp. SIO2G3 TaxID=2607795 RepID=A0A6P0QLC2_9CYAN)

HSP 1 Score: 84.3 bits (207), Expect = 1.360e-20
Identity = 34/50 (68.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    1 MPRGVKKSDLPFKICTICNRPFNWRKKWESCWDEVTTCSKSCNSARRKVK 150
            MPRGVKKSDLP KIC +C+RPF WRKKWE+CWDEV  CS  C   R   K
Sbjct:    1 MPRGVKKSDLPTKICPVCHRPFTWRKKWENCWDEVKYCSDRCRRHRLAAK 50
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|138859 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CH91_9STRA6.400e-34100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S0W7F5_9CRYP2.910e-2476.00Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A1Z5K3C1_FISSO1.980e-2382.98Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A7S0GXJ7_MICPS5.500e-2275.00Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
K8EHJ5_9CHLO7.650e-2270.00Uncharacterized protein n=1 Tax=Bathycoccus prasin... [more]
B8BYZ3_THAPS1.440e-2170.83Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S2T0B9_9CHLO4.380e-2164.00Hypothetical protein (Fragment) n=1 Tax=Chloropico... [more]
A4S0N5_OSTLU5.300e-2173.33Uncharacterized protein n=1 Tax=Ostreococcus lucim... [more]
UPI00168916026.570e-2168.00DUF2256 domain-containing protein n=1 Tax=Microcol... [more]
A0A6P0QLC2_9CYAN1.360e-2068.00DUF2256 domain-containing protein n=1 Tax=Microcol... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_225contigContig_225:35844..36088 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|138859|gw1.225.1.1
Max annot lvl2836|Bacillariophyta
EggNOG OGs2BVJ3@1|root,2S2AQ@2759|Eukaryota,2XCJA@2836|Bacillariophyta
Evalue2.37e-22
Seed ortholog35128.Thaps4330
Hectar predicted targeting categoryno signal peptide or anchor
TranscriptId139181
TrackFilteredModels1
ProteinId138859
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|138859gene_17667Tribonema minus UTEX_B_3156 geneContig_225 35844..36088 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17667_1exon_17667_1Tribonema minus UTEX_B_3156 exonContig_225 35844..35902 +
exon_17667_2exon_17667_2Tribonema minus UTEX_B_3156 exonContig_225 35998..36088 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17667CDS_17667Tribonema minus UTEX_B_3156 CDSContig_225 35844..35902 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|138859Trimin1|138859|gw1.225.1.1Tribonema minus UTEX_B_3156 polypeptideContig_225 35844..36088 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17667 ID=mRNA_17667|Name=jgi.p|Trimin1|138859|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=150bp|location=Sequence derived from alignment at Contig_225:35844..36088+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCGAGGGGTGAAGAAGTCCGACCTCCCCTTCAAGATCTGCACCAT
CTGCAACAGGCCCTTCAACTGGCGCAAGAAGTGGGAGAGCTGCTGGGATG
AGGTGACGACCTGCAGCAAGAGCTGCAACAGCGCTCGCAGAAAAGTCAAG
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protein sequence of jgi.p|Trimin1|138859

>Trimin1|138859|gw1.225.1.1 ID=Trimin1|138859|gw1.225.1.1|Name=jgi.p|Trimin1|138859|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=50bp
MPRGVKKSDLPFKICTICNRPFNWRKKWESCWDEVTTCSKSCNSARRKVK
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mRNA from alignment at Contig_225:35844..36088+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17667 ID=mRNA_17667|Name=jgi.p|Trimin1|138859|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=245bp|location=Sequence derived from alignment at Contig_225:35844..36088+ (Tribonema minus UTEX_B_3156 )
ATGCCGCGAGGGGTGAAGAAGTCCGACCTCCCCTTCAAGATCTGCACCAT
CTGCAACAGGTGGGGGCAGTATGTGCTCACTGCTTTCAAAACAACCATGT
GCTTCTGACACACACTGTGATGCGTCAATCCTCGCATCCGTGTGCCTTCG
ACAGGCCCTTCAACTGGCGCAAGAAGTGGGAGAGCTGCTGGGATGAGGTG
ACGACCTGCAGCAAGAGCTGCAACAGCGCTCGCAGAAAAGTCAAG
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Coding sequence (CDS) from alignment at Contig_225:35844..36088+

>mRNA_17667 ID=mRNA_17667|Name=jgi.p|Trimin1|138859|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=150bp|location=Sequence derived from alignment at Contig_225:35844..36088+ (Tribonema minus UTEX_B_3156 )
ATGCCGCGAGGGGTGAAGAAGTCCGACCTCCCCTTCAAGATCTGCACCAT
CTGCAACAGGCCCTTCAACTGGCGCAAGAAGTGGGAGAGCTGCTGGGATG
AGGTGACGACCTGCAGCAAGAGCTGCAACAGCGCTCGCAGAAAAGTCAAG
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