mRNA_17649 (mRNA) Tribonema minus UTEX_B_3156
|
Overview
Homology
BLAST of jgi.p|Trimin1|155927 vs. uniprot
Match: A0A836CH78_9STRA (Ankyrin repeat-containing domain protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH78_9STRA) HSP 1 Score: 268 bits (684), Expect = 4.920e-91 Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 1
Query: 1 LVAAVRADDVAALRAMRDAGRCMSACNRFGESILHTAARRGSRAVVAFLLESGAPPGACDDCGRNALHQALWTAEPRFDVVTLLVNADVRLLRCVDKRGAPPLQYARPEHWELWCRFFHSKKHLYWP 381
LVAAVRADDVAALRAMRDAGRCMSACNRFGESILHTAARRGSRAVVAFLLESGAPPGACDDCGRNALHQALWTAEPRFDVVTLLVNADVRLLRCVDKRGAPPLQYARPEHWELWCRFFHSKKHLYWP
Sbjct: 1 LVAAVRADDVAALRAMRDAGRCMSACNRFGESILHTAARRGSRAVVAFLLESGAPPGACDDCGRNALHQALWTAEPRFDVVTLLVNADVRLLRCVDKRGAPPLQYARPEHWELWCRFFHSKKHLYWP 127
BLAST of jgi.p|Trimin1|155927 vs. uniprot
Match: A0A836C8T3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8T3_9STRA) HSP 1 Score: 210 bits (535), Expect = 1.070e-67 Identity = 99/127 (77.95%), Postives = 105/127 (82.68%), Query Frame = 1
Query: 1 LVAAVRADDVAALRAMRDAGRCMSACNRFGESILHTAARRGSRAVVAFLLESGAPPGACDDCGRNALHQALWTAEPRFDVVTLLVNADVRLLRCVDKRGAPPLQYARPEHWELWCRFFHSKKHLYWP 381
LV AVR D+AALRAMR AG M+ACNRFGES+LHTA R GS VVAFLLESGA G CDDCGR ALH ALWT PRFDV TLL+N DVRLLRC+DKRGA PLQY RPEHW LWCRFFH+KKHLYWP
Sbjct: 44 LVGAVRGGDLAALRAMRAAGHTMTACNRFGESVLHTAVRHGSVDVVAFLLESGAHAGTCDDCGRTALHFALWTPAPRFDVATLLLNTDVRLLRCLDKRGASPLQYVRPEHWPLWCRFFHAKKHLYWP 170
BLAST of jgi.p|Trimin1|155927 vs. uniprot
Match: D7FYR4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYR4_ECTSI) HSP 1 Score: 142 bits (359), Expect = 1.310e-37 Identity = 68/129 (52.71%), Postives = 86/129 (66.67%), Query Frame = 1
Query: 1 LVAAVRADDVAALRAMRDAGRCMSACNRFGESILHTAARRGSRAVVAFLLESGAPPG--ACDDCGRNALHQALWTAEPRFDVVTLLVNADVRLLRCVDKRGAPPLQYARPEHWELWCRFFHSKKHLYWP 381
++ AV +D AAL MR AGR M ACNRFG+SILH A RRG A + FLL + G + DD GR +H A WT+ PRFDV + +++AD RLLR +D RG+ PLQY + W LWC FF S+K +YWP
Sbjct: 391 ILRAVLDEDEAALERMRAAGRRMDACNRFGDSILHMACRRGRAAALRFLLRAAGSAGVVSSDDFGRTVMHDACWTSSPRFDVASAVLDADTRLLRTLDSRGSSPLQYVPEDQWPLWCAFFESRKEVYWP 519
BLAST of jgi.p|Trimin1|155927 vs. uniprot
Match: A0A7S2DD81_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DD81_9STRA) HSP 1 Score: 137 bits (346), Expect = 1.810e-37 Identity = 66/125 (52.80%), Postives = 83/125 (66.40%), Query Frame = 1
Query: 4 VAAVRADDVAALRAMRDAGRCMSACNRFGESILHTAARRGSRAVVAFLLESGAPPGACDDCGRNALHQALWTAEPRFDVVTLLVNADVRLLRCVDKRGAPPLQYARPEHWELWCRFFHSKKHLYW 378
VAAVRA DV + M D G ++ACN+FGESI+H A RRG+ V+ L+ GA DD GR +H A W AEP FDVV LL+N D+ LLR +DKRGA PL Y RPEH+ +WC F +K ++W
Sbjct: 175 VAAVRASDVKTISKMLDRGHHVNACNKFGESIIHIACRRGNFKVLEQLVSHGATLSISDDYGRTPMHDACWNAEPCFDVVALLLNRDLELLRVLDKRGATPLSYVRPEHYAIWCAFLDYQKDVWW 299
BLAST of jgi.p|Trimin1|155927 vs. uniprot
Match: A0A6H5JRJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ3_9PHAE) HSP 1 Score: 142 bits (358), Expect = 1.820e-37 Identity = 68/129 (52.71%), Postives = 86/129 (66.67%), Query Frame = 1
Query: 1 LVAAVRADDVAALRAMRDAGRCMSACNRFGESILHTAARRGSRAVVAFLLESGAPPG--ACDDCGRNALHQALWTAEPRFDVVTLLVNADVRLLRCVDKRGAPPLQYARPEHWELWCRFFHSKKHLYWP 381
++ AV +D AAL MR AGR M ACNRFG+SILH A RRG A + FLL + G + DD GR +H A WT+ PRFDV + +++AD RLLR +D RG+ PLQY + W LWC FF S+K +YWP
Sbjct: 391 ILRAVLDEDEAALERMRVAGRRMDACNRFGDSILHMACRRGRAAALRFLLRAAGSAGVVSSDDFGRTVMHDACWTSSPRFDVASAVLDADTRLLRTLDSRGSSPLQYVPEDQWPLWCAFFESRKEVYWP 519
BLAST of jgi.p|Trimin1|155927 vs. uniprot
Match: A0A6H5JNI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNI0_9PHAE) HSP 1 Score: 130 bits (328), Expect = 4.830e-35 Identity = 66/127 (51.97%), Postives = 78/127 (61.42%), Query Frame = 1
Query: 1 LVAAVRADDVAALRAMRDAGRCMSACNRFGESILHTAARRGSRAVVAFLLESGAPPGACDDCGRNALHQALWTAEPRFDVVTLLVNADVRLLRCVDKRGAPPLQYARPEHWELWCRFFHSKKHLYWP 381
LV AVR D+ AL A+ G M A NRFGESI+H A RRGS V+ FLL G CDD G+ LH A WTAEPRF++V +++ D LLR D RGA PL+YA+ EHW WC F K WP
Sbjct: 139 LVEAVRRWDMGALEALAADGVDMGASNRFGESIVHLATRRGSTPVLRFLLSHGGSLRICDDYGKTPLHDAFWTAEPRFELVAMMLEMDWGLLRATDVRGATPLRYAKNEHWASWCEFLDRVKDHLWP 265
BLAST of jgi.p|Trimin1|155927 vs. uniprot
Match: A0A482SQ78_9ARCH (Ankyrin repeat domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SQ78_9ARCH) HSP 1 Score: 123 bits (308), Expect = 1.950e-33 Identity = 55/104 (52.88%), Postives = 69/104 (66.35%), Query Frame = 1
Query: 67 MSACNRFGESILHTAARRGSRAVVAFLLESGAPPGACDDCGRNALHQALWTAEPRFDVVTLLVNADVRLLRCVDKRGAPPLQYARPEHWELWCRFFHSKKHLYW 378
M+ACNR+ ESI+H A RR +V FLL+ GA DDCGR ALH A W EPRFD+V L+++A + L+R VD RGA PL+Y R EHW WC F ++ YW
Sbjct: 27 MTACNRYSESIVHMACRRSENEIVQFLLQHGADFSIVDDCGRTALHDACWRPEPRFDIVVLIMDAHLDLVRHVDARGAIPLKYVREEHWLQWCAFLFNQIEKYW 130
BLAST of jgi.p|Trimin1|155927 vs. uniprot
Match: A0A7S0SWK6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SWK6_9STRA) HSP 1 Score: 127 bits (318), Expect = 3.420e-33 Identity = 61/122 (50.00%), Postives = 80/122 (65.57%), Query Frame = 1
Query: 1 LVAAVRADDVAALRAMRDAGRCMSACNRFGESILHTAARRGSRAVVAFLLESGAPPGACDDCGRNALHQALWTAEPRFDVVTLLVNADVRLLRCVDKRGAPPLQYARPEHWELWCRFFHSKK 366
L+ A+R D++ L+A+ D G MSACNR+ ESI+H A RR AVV FLL++G DD GR LH A W +PRFD+VT+L++ D+ LLR D RG+ PL Y R EHW WC +F +K
Sbjct: 190 LINAIRYSDLSKLKALVDQGYSMSACNRYSESIVHMACRRSDPAVVDFLLKNGGDYYITDDFGRTPLHDACWRLDPRFDIVTMLLDNDLTLLRLADIRGSIPLCYVRQEHWAKWCAYFFHQK 311
BLAST of jgi.p|Trimin1|155927 vs. uniprot
Match: A0A7S2RMJ8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RMJ8_9STRA) HSP 1 Score: 126 bits (317), Expect = 5.440e-32 Identity = 59/125 (47.20%), Postives = 81/125 (64.80%), Query Frame = 1
Query: 4 VAAVRADDVAALRAMRDAGRCMSACNRFGESILHTAARRGSRAVVAFLLESGAPPGACDDCGRNALHQALWTAEPRFDVVTLLVNADVRLLRCVDKRGAPPLQYARPEHWELWCRFFHSKKHLYW 378
V A+R + AA+++ D GR M+ACN++GES++H A RRG +V+F++E G DD GR LH A WT EP DVV L+N ++RLL +DKRG PL Y R EH+++W FF S K +W
Sbjct: 325 VDAIRTSNYAAIQSFYDEGRSMNACNKYGESVMHMACRRGDGKLVSFMVELGGLLEITDDYGRTPLHDACWTPEPCLDVVMFLLNKNLRLLHLIDKRGFSPLAYVRREHYDVWTSFFDSMKDTWW 449
BLAST of jgi.p|Trimin1|155927 vs. uniprot
Match: A0A7S2W094_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W094_9STRA) HSP 1 Score: 117 bits (294), Expect = 1.770e-31 Identity = 58/123 (47.15%), Postives = 78/123 (63.41%), Query Frame = 1
Query: 1 LVAAVRADDVAALRAMRDAGRCMSACNRFGESILHTAARRGSRAVVAFLL-ESGAPPGACDDCGRNALHQALWTAEPRFDVVTLLVNADVRLLRCVDKRGAPPLQYARPEHWELWCRFFHSKK 366
+VAAVR +D+ AL+AM AGR +S CNR+GES+LH A RRG ++V+FL+ E+ DDCGRN LH ALW + ++ +V LL + LL D RG P Y R EHW +W +F +K
Sbjct: 5 VVAAVRDNDLEALKAMHLAGRSLSCCNRYGESVLHMACRRGFHSIVSFLITEAKVSIRIADDCGRNPLHDALWHRDTQYHIVDLLARLEPTLLLSCDNRGFSPFAYCRQEHWGVWRQFLWDRK 127 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|155927 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_17649 ID=mRNA_17649|Name=jgi.p|Trimin1|155927|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=381bp|location=Sequence derived from alignment at Contig_218:42137..43603- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CTCGTGGCGGCGGTGCGCGCGGACGACGTCGCGGCGCTGCGCGCGATGCGback to top protein sequence of jgi.p|Trimin1|155927 >Trimin1|155927|gw1.218.37.1 ID=Trimin1|155927|gw1.218.37.1|Name=jgi.p|Trimin1|155927|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=127bp LVAAVRADDVAALRAMRDAGRCMSACNRFGESILHTAARRGSRAVVAFLLback to top mRNA from alignment at Contig_218:42137..43603- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_17649 ID=mRNA_17649|Name=jgi.p|Trimin1|155927|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1467bp|location=Sequence derived from alignment at Contig_218:42137..43603- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_218:42137..43603- >mRNA_17649 ID=mRNA_17649|Name=jgi.p|Trimin1|155927|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=381bp|location=Sequence derived from alignment at Contig_218:42137..43603- (Tribonema minus UTEX_B_3156 )back to top |