mRNA_17649 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|155927
Unique NamemRNA_17649
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|155927 vs. uniprot
Match: A0A836CH78_9STRA (Ankyrin repeat-containing domain protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH78_9STRA)

HSP 1 Score: 268 bits (684), Expect = 4.920e-91
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 1
Query:    1 LVAAVRADDVAALRAMRDAGRCMSACNRFGESILHTAARRGSRAVVAFLLESGAPPGACDDCGRNALHQALWTAEPRFDVVTLLVNADVRLLRCVDKRGAPPLQYARPEHWELWCRFFHSKKHLYWP 381
            LVAAVRADDVAALRAMRDAGRCMSACNRFGESILHTAARRGSRAVVAFLLESGAPPGACDDCGRNALHQALWTAEPRFDVVTLLVNADVRLLRCVDKRGAPPLQYARPEHWELWCRFFHSKKHLYWP
Sbjct:    1 LVAAVRADDVAALRAMRDAGRCMSACNRFGESILHTAARRGSRAVVAFLLESGAPPGACDDCGRNALHQALWTAEPRFDVVTLLVNADVRLLRCVDKRGAPPLQYARPEHWELWCRFFHSKKHLYWP 127          
BLAST of jgi.p|Trimin1|155927 vs. uniprot
Match: A0A836C8T3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8T3_9STRA)

HSP 1 Score: 210 bits (535), Expect = 1.070e-67
Identity = 99/127 (77.95%), Postives = 105/127 (82.68%), Query Frame = 1
Query:    1 LVAAVRADDVAALRAMRDAGRCMSACNRFGESILHTAARRGSRAVVAFLLESGAPPGACDDCGRNALHQALWTAEPRFDVVTLLVNADVRLLRCVDKRGAPPLQYARPEHWELWCRFFHSKKHLYWP 381
            LV AVR  D+AALRAMR AG  M+ACNRFGES+LHTA R GS  VVAFLLESGA  G CDDCGR ALH ALWT  PRFDV TLL+N DVRLLRC+DKRGA PLQY RPEHW LWCRFFH+KKHLYWP
Sbjct:   44 LVGAVRGGDLAALRAMRAAGHTMTACNRFGESVLHTAVRHGSVDVVAFLLESGAHAGTCDDCGRTALHFALWTPAPRFDVATLLLNTDVRLLRCLDKRGASPLQYVRPEHWPLWCRFFHAKKHLYWP 170          
BLAST of jgi.p|Trimin1|155927 vs. uniprot
Match: D7FYR4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYR4_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 1.310e-37
Identity = 68/129 (52.71%), Postives = 86/129 (66.67%), Query Frame = 1
Query:    1 LVAAVRADDVAALRAMRDAGRCMSACNRFGESILHTAARRGSRAVVAFLLESGAPPG--ACDDCGRNALHQALWTAEPRFDVVTLLVNADVRLLRCVDKRGAPPLQYARPEHWELWCRFFHSKKHLYWP 381
            ++ AV  +D AAL  MR AGR M ACNRFG+SILH A RRG  A + FLL +    G  + DD GR  +H A WT+ PRFDV + +++AD RLLR +D RG+ PLQY   + W LWC FF S+K +YWP
Sbjct:  391 ILRAVLDEDEAALERMRAAGRRMDACNRFGDSILHMACRRGRAAALRFLLRAAGSAGVVSSDDFGRTVMHDACWTSSPRFDVASAVLDADTRLLRTLDSRGSSPLQYVPEDQWPLWCAFFESRKEVYWP 519          
BLAST of jgi.p|Trimin1|155927 vs. uniprot
Match: A0A7S2DD81_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DD81_9STRA)

HSP 1 Score: 137 bits (346), Expect = 1.810e-37
Identity = 66/125 (52.80%), Postives = 83/125 (66.40%), Query Frame = 1
Query:    4 VAAVRADDVAALRAMRDAGRCMSACNRFGESILHTAARRGSRAVVAFLLESGAPPGACDDCGRNALHQALWTAEPRFDVVTLLVNADVRLLRCVDKRGAPPLQYARPEHWELWCRFFHSKKHLYW 378
            VAAVRA DV  +  M D G  ++ACN+FGESI+H A RRG+  V+  L+  GA     DD GR  +H A W AEP FDVV LL+N D+ LLR +DKRGA PL Y RPEH+ +WC F   +K ++W
Sbjct:  175 VAAVRASDVKTISKMLDRGHHVNACNKFGESIIHIACRRGNFKVLEQLVSHGATLSISDDYGRTPMHDACWNAEPCFDVVALLLNRDLELLRVLDKRGATPLSYVRPEHYAIWCAFLDYQKDVWW 299          
BLAST of jgi.p|Trimin1|155927 vs. uniprot
Match: A0A6H5JRJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ3_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 1.820e-37
Identity = 68/129 (52.71%), Postives = 86/129 (66.67%), Query Frame = 1
Query:    1 LVAAVRADDVAALRAMRDAGRCMSACNRFGESILHTAARRGSRAVVAFLLESGAPPG--ACDDCGRNALHQALWTAEPRFDVVTLLVNADVRLLRCVDKRGAPPLQYARPEHWELWCRFFHSKKHLYWP 381
            ++ AV  +D AAL  MR AGR M ACNRFG+SILH A RRG  A + FLL +    G  + DD GR  +H A WT+ PRFDV + +++AD RLLR +D RG+ PLQY   + W LWC FF S+K +YWP
Sbjct:  391 ILRAVLDEDEAALERMRVAGRRMDACNRFGDSILHMACRRGRAAALRFLLRAAGSAGVVSSDDFGRTVMHDACWTSSPRFDVASAVLDADTRLLRTLDSRGSSPLQYVPEDQWPLWCAFFESRKEVYWP 519          
BLAST of jgi.p|Trimin1|155927 vs. uniprot
Match: A0A6H5JNI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNI0_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 4.830e-35
Identity = 66/127 (51.97%), Postives = 78/127 (61.42%), Query Frame = 1
Query:    1 LVAAVRADDVAALRAMRDAGRCMSACNRFGESILHTAARRGSRAVVAFLLESGAPPGACDDCGRNALHQALWTAEPRFDVVTLLVNADVRLLRCVDKRGAPPLQYARPEHWELWCRFFHSKKHLYWP 381
            LV AVR  D+ AL A+   G  M A NRFGESI+H A RRGS  V+ FLL  G     CDD G+  LH A WTAEPRF++V +++  D  LLR  D RGA PL+YA+ EHW  WC F    K   WP
Sbjct:  139 LVEAVRRWDMGALEALAADGVDMGASNRFGESIVHLATRRGSTPVLRFLLSHGGSLRICDDYGKTPLHDAFWTAEPRFELVAMMLEMDWGLLRATDVRGATPLRYAKNEHWASWCEFLDRVKDHLWP 265          
BLAST of jgi.p|Trimin1|155927 vs. uniprot
Match: A0A482SQ78_9ARCH (Ankyrin repeat domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SQ78_9ARCH)

HSP 1 Score: 123 bits (308), Expect = 1.950e-33
Identity = 55/104 (52.88%), Postives = 69/104 (66.35%), Query Frame = 1
Query:   67 MSACNRFGESILHTAARRGSRAVVAFLLESGAPPGACDDCGRNALHQALWTAEPRFDVVTLLVNADVRLLRCVDKRGAPPLQYARPEHWELWCRFFHSKKHLYW 378
            M+ACNR+ ESI+H A RR    +V FLL+ GA     DDCGR ALH A W  EPRFD+V L+++A + L+R VD RGA PL+Y R EHW  WC F  ++   YW
Sbjct:   27 MTACNRYSESIVHMACRRSENEIVQFLLQHGADFSIVDDCGRTALHDACWRPEPRFDIVVLIMDAHLDLVRHVDARGAIPLKYVREEHWLQWCAFLFNQIEKYW 130          
BLAST of jgi.p|Trimin1|155927 vs. uniprot
Match: A0A7S0SWK6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SWK6_9STRA)

HSP 1 Score: 127 bits (318), Expect = 3.420e-33
Identity = 61/122 (50.00%), Postives = 80/122 (65.57%), Query Frame = 1
Query:    1 LVAAVRADDVAALRAMRDAGRCMSACNRFGESILHTAARRGSRAVVAFLLESGAPPGACDDCGRNALHQALWTAEPRFDVVTLLVNADVRLLRCVDKRGAPPLQYARPEHWELWCRFFHSKK 366
            L+ A+R  D++ L+A+ D G  MSACNR+ ESI+H A RR   AVV FLL++G      DD GR  LH A W  +PRFD+VT+L++ D+ LLR  D RG+ PL Y R EHW  WC +F  +K
Sbjct:  190 LINAIRYSDLSKLKALVDQGYSMSACNRYSESIVHMACRRSDPAVVDFLLKNGGDYYITDDFGRTPLHDACWRLDPRFDIVTMLLDNDLTLLRLADIRGSIPLCYVRQEHWAKWCAYFFHQK 311          
BLAST of jgi.p|Trimin1|155927 vs. uniprot
Match: A0A7S2RMJ8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RMJ8_9STRA)

HSP 1 Score: 126 bits (317), Expect = 5.440e-32
Identity = 59/125 (47.20%), Postives = 81/125 (64.80%), Query Frame = 1
Query:    4 VAAVRADDVAALRAMRDAGRCMSACNRFGESILHTAARRGSRAVVAFLLESGAPPGACDDCGRNALHQALWTAEPRFDVVTLLVNADVRLLRCVDKRGAPPLQYARPEHWELWCRFFHSKKHLYW 378
            V A+R  + AA+++  D GR M+ACN++GES++H A RRG   +V+F++E G      DD GR  LH A WT EP  DVV  L+N ++RLL  +DKRG  PL Y R EH+++W  FF S K  +W
Sbjct:  325 VDAIRTSNYAAIQSFYDEGRSMNACNKYGESVMHMACRRGDGKLVSFMVELGGLLEITDDYGRTPLHDACWTPEPCLDVVMFLLNKNLRLLHLIDKRGFSPLAYVRREHYDVWTSFFDSMKDTWW 449          
BLAST of jgi.p|Trimin1|155927 vs. uniprot
Match: A0A7S2W094_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W094_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.770e-31
Identity = 58/123 (47.15%), Postives = 78/123 (63.41%), Query Frame = 1
Query:    1 LVAAVRADDVAALRAMRDAGRCMSACNRFGESILHTAARRGSRAVVAFLL-ESGAPPGACDDCGRNALHQALWTAEPRFDVVTLLVNADVRLLRCVDKRGAPPLQYARPEHWELWCRFFHSKK 366
            +VAAVR +D+ AL+AM  AGR +S CNR+GES+LH A RRG  ++V+FL+ E+       DDCGRN LH ALW  + ++ +V LL   +  LL   D RG  P  Y R EHW +W +F   +K
Sbjct:    5 VVAAVRDNDLEALKAMHLAGRSLSCCNRYGESVLHMACRRGFHSIVSFLITEAKVSIRIADDCGRNPLHDALWHRDTQYHIVDLLARLEPTLLLSCDNRGFSPFAYCRQEHWGVWRQFLWDRK 127          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|155927 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CH78_9STRA4.920e-91100.00Ankyrin repeat-containing domain protein (Fragment... [more]
A0A836C8T3_9STRA1.070e-6777.95Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
D7FYR4_ECTSI1.310e-3752.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2DD81_9STRA1.810e-3752.80Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6H5JRJ3_9PHAE1.820e-3752.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNI0_9PHAE4.830e-3551.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A482SQ78_9ARCH1.950e-3352.88Ankyrin repeat domain-containing protein n=1 Tax=a... [more]
A0A7S0SWK6_9STRA3.420e-3350.00Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A7S2RMJ8_9STRA5.440e-3247.20Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2W094_9STRA1.770e-3147.15Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_218contigContig_218:42137..43603 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|155927|gw1.218.37.1
Descriptionankyrin repeats
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs2C0FJ@1|root,2S48R@2759|Eukaryota
Evalue2.15e-38
Seed ortholog2880.D7FYR4
Hectar predicted targeting categorymitochondrion
TranscriptId156249
TrackFilteredModels1
ProteinId155927
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|155927gene_17649Tribonema minus UTEX_B_3156 geneContig_218 42137..43603 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|155927Trimin1|155927|gw1.218.37.1Tribonema minus UTEX_B_3156 polypeptideContig_218 42137..43603 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17649_2exon_17649_2Tribonema minus UTEX_B_3156 exonContig_218 42137..42429 -
exon_17649_1exon_17649_1Tribonema minus UTEX_B_3156 exonContig_218 43516..43603 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17649CDS_17649Tribonema minus UTEX_B_3156 CDSContig_218 43516..43603 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17649 ID=mRNA_17649|Name=jgi.p|Trimin1|155927|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=381bp|location=Sequence derived from alignment at Contig_218:42137..43603- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTCGTGGCGGCGGTGCGCGCGGACGACGTCGCGGCGCTGCGCGCGATGCG
CGACGCGGGGAGGTGCATGTCGGCGTGCAACCGCTTCGGCGAGTCCATCC
TGCACACGGCGGCGCGGCGCGGCAGCCGCGCGGTCGTCGCCTTCCTGCTC
GAGAGCGGCGCGCCGCCGGGCGCGTGCGACGACTGCGGGCGCAACGCGCT
GCACCAGGCGCTCTGGACGGCGGAGCCGCGCTTCGACGTCGTGACGCTCC
TTGTCAACGCGGACGTGCGCCTGCTGCGCTGCGTCGACAAGCGCGGCGCG
CCGCCGCTGCAGTACGCGCGCCCCGAGCACTGGGAGCTCTGGTGCCGCTT
CTTCCACTCCAAGAAGCACCTGTACTGGCCG
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protein sequence of jgi.p|Trimin1|155927

>Trimin1|155927|gw1.218.37.1 ID=Trimin1|155927|gw1.218.37.1|Name=jgi.p|Trimin1|155927|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=127bp
LVAAVRADDVAALRAMRDAGRCMSACNRFGESILHTAARRGSRAVVAFLL
ESGAPPGACDDCGRNALHQALWTAEPRFDVVTLLVNADVRLLRCVDKRGA
PPLQYARPEHWELWCRFFHSKKHLYWP
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mRNA from alignment at Contig_218:42137..43603-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17649 ID=mRNA_17649|Name=jgi.p|Trimin1|155927|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1467bp|location=Sequence derived from alignment at Contig_218:42137..43603- (Tribonema minus UTEX_B_3156 )
CTCGTGGCGGCGGTGCGCGCGGACGACGTCGCGGCGCTGCGCGCGATGCG CGACGCGGGGAGGTGCATGTCGGCGTGCAACCGCTTCGGTGAGTCAGCGG CGCTCGCCGCTCTCTTTGCATGCGCCCCCTCTCTATTTGTGTGTGTGTGT TTGTGGCTGCCGGGAGTGTACGGGTGTCCGCGCGGTCGTCGCCGCTGCAG CAGCGCTCAGCTGTGTAGCATCAGGCATCGGCGCTCATCAGCATTACCTC TGTAGCAGCCTTCGCCGTATCGCTGGGCACGGCATCAGTGCGCGTTAGAC TTGCCGATGTACGTAGCGCTTTACGTCCGAGCCTGAAGTCCCATAGGGCA TGCCTGATGATGATGAAGGCAGGAATGATTCACAAAGCTGTGGCGACAGG TATGCAGATTGCAATGGCACCCACGTCGCAGGTGATTTGCACCAGTGAGC ACGTGCAGTGGTATGGTGACTCAGCGCCGCGAGTGGGCAGGCAGCACGCA TGCAGCTCCGCGCTGTCAAAGCCTCGAGCTCGCTGCGGCAGCAGACGCGC TGTTGATGTCGCTCGGGGGGATCGCCACGATGGGGGTAGGCAGCTACAGC ACTGTGGCATCATGCCAGCGGGTAGCACTCACACTCTGTTGCCTCAGCCG CAACTCGCACGTGGTGAGCAGCGTCGTTCTGGTATGTTGCTTGATGCTGT CTTGGCCGTATCTCACGCGACGAGTGAGGCGCGCGGCTGTCACGAGTGCG CTGCCGGCGCGGTGAGCACTTGCGAGTTATCGCATTGAGAATTGCCCAGT GGTGCCTGAGCGGCAGCGCGCTGTACACATGGAGACCTTGTGTGTGAGGC GGCGACGCCGCTGCCTCACGGCAAACCTGCTGCCTTAGAAAGCAGCATGG ACTGCAGAGGTTGATGCCTGCGTTATGTGCGACCATGACAGCCATGAGCC CACCTGCCGCACGTCAAGATGCACGTGACACCATCTCAGCTTTCGGAGCT AACCAGCGGTCTCCGCCCAGTCATGCAAAGGCACCAGACACTATGGGCCT GTTCTGGGTTGCAGCCAAATGCAATGCAATGTGATGGCAGCGCTCAACTG CAATGCTACCCCCCCCACACACACCCCTGCAGTGCTAACCCCCCCTCCAC CCCCCCCCCTCTGCTACCGCGCAGGCGAGTCCATCCTGCACACGGCGGCG CGGCGCGGCAGCCGCGCGGTCGTCGCCTTCCTGCTCGAGAGCGGCGCGCC GCCGGGCGCGTGCGACGACTGCGGGCGCAACGCGCTGCACCAGGCGCTCT GGACGGCGGAGCCGCGCTTCGACGTCGTGACGCTCCTTGTCAACGCGGAC GTGCGCCTGCTGCGCTGCGTCGACAAGCGCGGCGCGCCGCCGCTGCAGTA CGCGCGCCCCGAGCACTGGGAGCTCTGGTGCCGCTTCTTCCACTCCAAGA AGCACCTGTACTGGCCG
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Coding sequence (CDS) from alignment at Contig_218:42137..43603-

>mRNA_17649 ID=mRNA_17649|Name=jgi.p|Trimin1|155927|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=381bp|location=Sequence derived from alignment at Contig_218:42137..43603- (Tribonema minus UTEX_B_3156 )
CTCGTGGCGGCGGTGCGCGCGGACGACGTCGCGGCGCTGCGCGCGATGCG
CGACGCGGGGAGGTGCATGTCGGCGTGCAACCGCTTCGGCGAGTCCATCC
TGCACACGGCGGCGCGGCGCGGCAGCCGCGCGGTCGTCGCCTTCCTGCTC
GAGAGCGGCGCGCCGCCGGGCGCGTGCGACGACTGCGGGCGCAACGCGCT
GCACCAGGCGCTCTGGACGGCGGAGCCGCGCTTCGACGTCGTGACGCTCC
TTGTCAACGCGGACGTGCGCCTGCTGCGCTGCGTCGACAAGCGCGGCGCG
CCGCCGCTGCAGTACGCGCGCCCCGAGCACTGGGAGCTCTGGTGCCGCTT
CTTCCACTCCAAGAAGCACCTGTACTGGCCG
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