mRNA_17629 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|138629 vs. uniprot
Match: A0A835Z0I1_9STRA (Phytochrome (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0I1_9STRA) HSP 1 Score: 233 bits (594), Expect = 1.010e-77 Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1 Query: 1 MLYTFDEDWNGEVLYEFKQVDDAVSYMGLHFPASDIPKVARDLYFQNKVRVIFDTKAPESEISGSKLNLKQCMLRGVAPMHKEYMANMGIRGSLSIAVGAQVLEGLLVFHSYDG 342 MLYTFDEDWNGEVLYEFKQVDDAVSYMGLHFPASDIPKVARDLYFQNKVRVIFDTKAPESEISGSKLNLKQCMLRGVAPMHKEYMANMGIRGSLSIAVGAQVLEGLLVFHSYDG Sbjct: 1 MLYTFDEDWNGEVLYEFKQVDDAVSYMGLHFPASDIPKVARDLYFQNKVRVIFDTKAPESEISGSKLNLKQCMLRGVAPMHKEYMANMGIRGSLSIAVGAQVLEGLLVFHSYDG 114
BLAST of jgi.p|Trimin1|138629 vs. uniprot
Match: A0A835Z406_9STRA (Phytochrome (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z406_9STRA) HSP 1 Score: 178 bits (451), Expect = 6.490e-56 Identity = 81/114 (71.05%), Postives = 98/114 (85.96%), Query Frame = 1 Query: 1 MLYTFDEDWNGEVLYEFKQVDDAVSYMGLHFPASDIPKVARDLYFQNKVRVIFDTKAPESEISGSKLNLKQCMLRGVAPMHKEYMANMGIRGSLSIAVGAQVLEGLLVFHSYDG 342 MLYTFD++WNG+V++EFK +D VSYMGLHFPASDIPKVARDLYF NKVR+IFD PE I+G KL++K+CMLRGVAPMH EYM NMGI+GS+S+A+ + L+GLLVFHSY G Sbjct: 1 MLYTFDDEWNGQVVHEFKMKEDDVSYMGLHFPASDIPKVARDLYFINKVRIIFDITKPEVPITGGKLDMKKCMLRGVAPMHVEYMTNMGIKGSISLAIDVEKLDGLLVFHSYQG 114
BLAST of jgi.p|Trimin1|138629 vs. uniprot
Match: A0A835Z4F3_9STRA (GAF domain-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4F3_9STRA) HSP 1 Score: 114 bits (285), Expect = 1.260e-27 Identity = 59/119 (49.58%), Postives = 78/119 (65.55%), Query Frame = 1 Query: 1 MLYTFDEDWNGEVLYEFKQVDDAVSYMGLHFPASDIPKVARDLYFQNKVRVIFDTKAPESEISGS----KLNLKQCMLRGVAPMHKEYMANMGIRGSLSIAVGAQ-VLEGLLVFHSYDG 342 M Y FD WNG+V++E D VSY+GLHFP +DIP+ ARD+Y + +VR IFD + E KL+L +C+ RGV+ +H YM NMGIRGS+SIA+ + L GLLV HS +G Sbjct: 136 MAYQFDSQWNGQVIFERIIGSDPVSYLGLHFPETDIPQAARDMYLEQRVRFIFDVDSAEVSFDTRGTPIKLDLSECVQRGVSDVHVRYMKNMGIRGSVSIAIIMRGALWGLLVLHSKNG 254
BLAST of jgi.p|Trimin1|138629 vs. uniprot
Match: A0A835YZ29_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ29_9STRA) HSP 1 Score: 110 bits (276), Expect = 5.500e-26 Identity = 58/119 (48.74%), Postives = 76/119 (63.87%), Query Frame = 1 Query: 1 MLYTFDEDWNGEVLYEFKQVDDAVSYMGLHFPASDIPKVARDLYFQNKVRVIFDTKAPESEISGS----KLNLKQCMLRGVAPMHKEYMANMGIRGSLSIAVGAQ-VLEGLLVFHSYDG 342 M Y FD WNG+V++E D VSY GLHFP +DIP+ ARD+Y + +VR IFD + E KL+L +C+ RGV+ +H YM NMGIRG +SIA+ + L GLLV HS +G Sbjct: 136 MAYQFDSQWNGQVIFERIIGTDPVSYQGLHFPETDIPQAARDMYLEQRVRFIFDVDSAEVSFDTRGTPFKLDLSECVQRGVSDVHVRYMKNMGIRGFVSIAIIMRGALWGLLVLHSKNG 254
BLAST of jgi.p|Trimin1|138629 vs. uniprot
Match: A0A838DLF5_9CHLR (GAF domain-containing protein n=1 Tax=Ktedonobacteraceae bacterium TaxID=2740538 RepID=A0A838DLF5_9CHLR) HSP 1 Score: 102 bits (254), Expect = 4.190e-23 Identity = 57/118 (48.31%), Postives = 74/118 (62.71%), Query Frame = 1 Query: 1 MLYTFDEDWNGEVLYEFKQVDDAVSYMGLHFPASDIPKVARDLYFQNKVRVIFDTKAPESE-------ISGSKLNLKQCMLRGVAPMHKEYMANMGIRGSLSIA-VGAQVLEGLLVFH 330 MLY FDE WNG V+ E KQ S++GL FPASDIP AR LY +N +RVI D K S I+G+ L++ C LR V+P+H EYM NMG+ +L+I+ + + L GLLV H Sbjct: 171 MLYQFDEKWNGTVIAEAKQAG-IESFLGLRFPASDIPSQARQLYLKNWLRVIADVKYQPSALIPATNPITGTPLDMSYCALRSVSPLHIEYMKNMGVTATLTISLIAGEALWGLLVCH 287
BLAST of jgi.p|Trimin1|138629 vs. uniprot
Match: A0A2N1KMN9_9BACT (Histidine kinase n=1 Tax=Siphonobacter sp. BAB-5404 TaxID=1864824 RepID=A0A2N1KMN9_9BACT) HSP 1 Score: 102 bits (253), Expect = 7.050e-23 Identity = 57/121 (47.11%), Postives = 78/121 (64.46%), Query Frame = 1 Query: 1 MLYTFDEDWNGEVLYEFKQVDDAVSYMGLHFPASDIPKVARDLYFQNKVRVIFDTKAPESEI-------SGSKLNLKQCMLRGVAPMHKEYMANMGIRGSLSIAVGAQ-VLEGLLVFHSYD 339 M+Y FDEDWNGEV E K+ D +++GLH+PASDIPK AR+LY N VR I D++A I + L+L Q +LR V+P+H EY+ NMG+R S+S ++ + L GL+ H YD Sbjct: 164 MIYRFDEDWNGEVAAEAKE-DHLETFLGLHYPASDIPKQARELYKTNFVRTIIDSQARSVAIYPGMNMETRQPLDLSQSILRAVSPVHIEYLKNMGVRSSMSFSLLYKGELWGLISCHHYD 283
BLAST of jgi.p|Trimin1|138629 vs. uniprot
Match: A0A7T1MJR0_9SYNE (Diguanylate cyclase n=1 Tax=Synechococcus sp. CBW1006 TaxID=1353138 RepID=A0A7T1MJR0_9SYNE) HSP 1 Score: 102 bits (253), Expect = 7.130e-23 Identity = 52/121 (42.98%), Postives = 74/121 (61.16%), Query Frame = 1 Query: 1 MLYTFDEDWNGEVLYEFKQVDDAVSYMGLHFPASDIPKVARDLYFQNKVRVIFDTKAPESEISGSK-------LNLKQCMLRGVAPMHKEYMANMGIRGSLSIAVGAQ-VLEGLLVFHSYD 339 MLY FD DWNG V+ E + + A SY+GLHFP+SDIP+ AR L+ N VR + D + P S + +K ++L QC R V+ +H+ Y+ NMG+R SL+ A+ L GL+ H+ D Sbjct: 224 MLYRFDSDWNGIVIAEDRAPEVATSYLGLHFPSSDIPRAARQLFHANSVRTLVDMQRPASALQYTKAYSQAQPVDLGQCHYRDVSDVHRRYLVNMGVRSSLTFALSVNNKLWGLIACHNMD 344
BLAST of jgi.p|Trimin1|138629 vs. uniprot
Match: A0A0P1BR65_9BASI (Phytochrome-like protein n=2 Tax=Ceraceosorus TaxID=401624 RepID=A0A0P1BR65_9BASI) HSP 1 Score: 102 bits (253), Expect = 7.370e-23 Identity = 54/121 (44.63%), Postives = 77/121 (63.64%), Query Frame = 1 Query: 1 MLYTFDEDWNGEVLYEFKQVDDAVS-YMGLHFPASDIPKVARDLYFQNKVRVIFDTKAP-------ESEISGSKLNLKQCMLRGVAPMHKEYMANMGIRGSLSIAVGA-QVLEGLLVFHSY 336 M+Y FDE WNG+V+ E + Y GLHFPASDIPK ARDLY NKVR+++D P E E + +++ +LR ++P+H +Y+ANMG+R S+SI++ A L GL+ H+Y Sbjct: 592 MIYQFDEAWNGQVVCELVDWSETHDLYRGLHFPASDIPKQARDLYMINKVRLLYDRDQPSARMVCREQEDLHTPVDMTHAVLRAMSPIHIKYLANMGVRASMSISITAFDQLWGLIALHTY 712
BLAST of jgi.p|Trimin1|138629 vs. uniprot
Match: A0A8H5HG86_9AGAR (Uncharacterized protein n=1 Tax=Tricholomella constricta TaxID=117010 RepID=A0A8H5HG86_9AGAR) HSP 1 Score: 102 bits (253), Expect = 7.380e-23 Identity = 59/123 (47.97%), Postives = 79/123 (64.23%), Query Frame = 1 Query: 1 MLYTFDEDWNGEV---LYEFKQVDDAVSYMGLHFPASDIPKVARDLYFQNKVRVIFDTKAPESEIS-GSK------LNLKQCMLRGVAPMHKEYMANMGIRGSLSIAVGA-QVLEGLLVFHSY 336 M+Y FDE WNG+V L ++ Q D Y GLHFPASDIP AR LY NKVR+++D P + I SK LN+ C LR ++P+H +Y+ANMG+R S+SI++ A +L GL+ HSY Sbjct: 833 MVYQFDEAWNGQVVAELVDWSQTKDL--YRGLHFPASDIPAQARALYAINKVRILYDRSQPTARIVVRSKEDLEVPLNMTHCYLRAMSPLHIKYLANMGVRASMSISIMAFGMLWGLITCHSY 953
BLAST of jgi.p|Trimin1|138629 vs. uniprot
Match: A0A7T1HQ21_9SYNE (EAL domain-containing protein n=2 Tax=Synechococcus sp. CBW1002 TaxID=1353134 RepID=A0A7T1HQ21_9SYNE) HSP 1 Score: 101 bits (252), Expect = 9.800e-23 Identity = 52/121 (42.98%), Postives = 74/121 (61.16%), Query Frame = 1 Query: 1 MLYTFDEDWNGEVLYEFKQVDDAVSYMGLHFPASDIPKVARDLYFQNKVRVIFDTKAPESEISGSK-------LNLKQCMLRGVAPMHKEYMANMGIRGSLSIAVGAQ-VLEGLLVFHSYD 339 MLY FD DWNG V+ E + + A SY+GLHFP+SDIP+ AR L+ N VR + D + P S + +K ++L QC R V+ +H+ Y+ NMG+R SL+ A+ L GL+ H+ D Sbjct: 137 MLYRFDSDWNGIVIAEDRAPEVATSYLGLHFPSSDIPRAARHLFHANSVRTLVDMQRPASALQYTKAYSQAQPVDLGQCHYRDVSDVHRRYLVNMGVRSSLTFALSVNNKLWGLIACHNMD 257 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|138629 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_17629 ID=mRNA_17629|Name=jgi.p|Trimin1|138629|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=342bp|location=Sequence derived from alignment at Contig_233:42130..42471- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGTTGTATACATTTGACGAGGATTGGAATGGTGAGGTTTTGTACGAATTback to top protein sequence of jgi.p|Trimin1|138629 >Trimin1|138629|gw1.233.18.1 ID=Trimin1|138629|gw1.233.18.1|Name=jgi.p|Trimin1|138629|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=114bp MLYTFDEDWNGEVLYEFKQVDDAVSYMGLHFPASDIPKVARDLYFQNKVRback to top mRNA from alignment at Contig_233:42130..42471- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_17629 ID=mRNA_17629|Name=jgi.p|Trimin1|138629|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=342bp|location=Sequence derived from alignment at Contig_233:42130..42471- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_233:42130..42471- >mRNA_17629 ID=mRNA_17629|Name=jgi.p|Trimin1|138629|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=342bp|location=Sequence derived from alignment at Contig_233:42130..42471- (Tribonema minus UTEX_B_3156 )back to top |