mRNA_17629 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|138629
Unique NamemRNA_17629
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|138629 vs. uniprot
Match: A0A835Z0I1_9STRA (Phytochrome (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0I1_9STRA)

HSP 1 Score: 233 bits (594), Expect = 1.010e-77
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1
Query:    1 MLYTFDEDWNGEVLYEFKQVDDAVSYMGLHFPASDIPKVARDLYFQNKVRVIFDTKAPESEISGSKLNLKQCMLRGVAPMHKEYMANMGIRGSLSIAVGAQVLEGLLVFHSYDG 342
            MLYTFDEDWNGEVLYEFKQVDDAVSYMGLHFPASDIPKVARDLYFQNKVRVIFDTKAPESEISGSKLNLKQCMLRGVAPMHKEYMANMGIRGSLSIAVGAQVLEGLLVFHSYDG
Sbjct:    1 MLYTFDEDWNGEVLYEFKQVDDAVSYMGLHFPASDIPKVARDLYFQNKVRVIFDTKAPESEISGSKLNLKQCMLRGVAPMHKEYMANMGIRGSLSIAVGAQVLEGLLVFHSYDG 114          
BLAST of jgi.p|Trimin1|138629 vs. uniprot
Match: A0A835Z406_9STRA (Phytochrome (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z406_9STRA)

HSP 1 Score: 178 bits (451), Expect = 6.490e-56
Identity = 81/114 (71.05%), Postives = 98/114 (85.96%), Query Frame = 1
Query:    1 MLYTFDEDWNGEVLYEFKQVDDAVSYMGLHFPASDIPKVARDLYFQNKVRVIFDTKAPESEISGSKLNLKQCMLRGVAPMHKEYMANMGIRGSLSIAVGAQVLEGLLVFHSYDG 342
            MLYTFD++WNG+V++EFK  +D VSYMGLHFPASDIPKVARDLYF NKVR+IFD   PE  I+G KL++K+CMLRGVAPMH EYM NMGI+GS+S+A+  + L+GLLVFHSY G
Sbjct:    1 MLYTFDDEWNGQVVHEFKMKEDDVSYMGLHFPASDIPKVARDLYFINKVRIIFDITKPEVPITGGKLDMKKCMLRGVAPMHVEYMTNMGIKGSISLAIDVEKLDGLLVFHSYQG 114          
BLAST of jgi.p|Trimin1|138629 vs. uniprot
Match: A0A835Z4F3_9STRA (GAF domain-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4F3_9STRA)

HSP 1 Score: 114 bits (285), Expect = 1.260e-27
Identity = 59/119 (49.58%), Postives = 78/119 (65.55%), Query Frame = 1
Query:    1 MLYTFDEDWNGEVLYEFKQVDDAVSYMGLHFPASDIPKVARDLYFQNKVRVIFDTKAPESEISGS----KLNLKQCMLRGVAPMHKEYMANMGIRGSLSIAVGAQ-VLEGLLVFHSYDG 342
            M Y FD  WNG+V++E     D VSY+GLHFP +DIP+ ARD+Y + +VR IFD  + E          KL+L +C+ RGV+ +H  YM NMGIRGS+SIA+  +  L GLLV HS +G
Sbjct:  136 MAYQFDSQWNGQVIFERIIGSDPVSYLGLHFPETDIPQAARDMYLEQRVRFIFDVDSAEVSFDTRGTPIKLDLSECVQRGVSDVHVRYMKNMGIRGSVSIAIIMRGALWGLLVLHSKNG 254          
BLAST of jgi.p|Trimin1|138629 vs. uniprot
Match: A0A835YZ29_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ29_9STRA)

HSP 1 Score: 110 bits (276), Expect = 5.500e-26
Identity = 58/119 (48.74%), Postives = 76/119 (63.87%), Query Frame = 1
Query:    1 MLYTFDEDWNGEVLYEFKQVDDAVSYMGLHFPASDIPKVARDLYFQNKVRVIFDTKAPESEISGS----KLNLKQCMLRGVAPMHKEYMANMGIRGSLSIAVGAQ-VLEGLLVFHSYDG 342
            M Y FD  WNG+V++E     D VSY GLHFP +DIP+ ARD+Y + +VR IFD  + E          KL+L +C+ RGV+ +H  YM NMGIRG +SIA+  +  L GLLV HS +G
Sbjct:  136 MAYQFDSQWNGQVIFERIIGTDPVSYQGLHFPETDIPQAARDMYLEQRVRFIFDVDSAEVSFDTRGTPFKLDLSECVQRGVSDVHVRYMKNMGIRGFVSIAIIMRGALWGLLVLHSKNG 254          
BLAST of jgi.p|Trimin1|138629 vs. uniprot
Match: A0A838DLF5_9CHLR (GAF domain-containing protein n=1 Tax=Ktedonobacteraceae bacterium TaxID=2740538 RepID=A0A838DLF5_9CHLR)

HSP 1 Score: 102 bits (254), Expect = 4.190e-23
Identity = 57/118 (48.31%), Postives = 74/118 (62.71%), Query Frame = 1
Query:    1 MLYTFDEDWNGEVLYEFKQVDDAVSYMGLHFPASDIPKVARDLYFQNKVRVIFDTKAPESE-------ISGSKLNLKQCMLRGVAPMHKEYMANMGIRGSLSIA-VGAQVLEGLLVFH 330
            MLY FDE WNG V+ E KQ     S++GL FPASDIP  AR LY +N +RVI D K   S        I+G+ L++  C LR V+P+H EYM NMG+  +L+I+ +  + L GLLV H
Sbjct:  171 MLYQFDEKWNGTVIAEAKQAG-IESFLGLRFPASDIPSQARQLYLKNWLRVIADVKYQPSALIPATNPITGTPLDMSYCALRSVSPLHIEYMKNMGVTATLTISLIAGEALWGLLVCH 287          
BLAST of jgi.p|Trimin1|138629 vs. uniprot
Match: A0A2N1KMN9_9BACT (Histidine kinase n=1 Tax=Siphonobacter sp. BAB-5404 TaxID=1864824 RepID=A0A2N1KMN9_9BACT)

HSP 1 Score: 102 bits (253), Expect = 7.050e-23
Identity = 57/121 (47.11%), Postives = 78/121 (64.46%), Query Frame = 1
Query:    1 MLYTFDEDWNGEVLYEFKQVDDAVSYMGLHFPASDIPKVARDLYFQNKVRVIFDTKAPESEI-------SGSKLNLKQCMLRGVAPMHKEYMANMGIRGSLSIAVGAQ-VLEGLLVFHSYD 339
            M+Y FDEDWNGEV  E K+ D   +++GLH+PASDIPK AR+LY  N VR I D++A    I       +   L+L Q +LR V+P+H EY+ NMG+R S+S ++  +  L GL+  H YD
Sbjct:  164 MIYRFDEDWNGEVAAEAKE-DHLETFLGLHYPASDIPKQARELYKTNFVRTIIDSQARSVAIYPGMNMETRQPLDLSQSILRAVSPVHIEYLKNMGVRSSMSFSLLYKGELWGLISCHHYD 283          
BLAST of jgi.p|Trimin1|138629 vs. uniprot
Match: A0A7T1MJR0_9SYNE (Diguanylate cyclase n=1 Tax=Synechococcus sp. CBW1006 TaxID=1353138 RepID=A0A7T1MJR0_9SYNE)

HSP 1 Score: 102 bits (253), Expect = 7.130e-23
Identity = 52/121 (42.98%), Postives = 74/121 (61.16%), Query Frame = 1
Query:    1 MLYTFDEDWNGEVLYEFKQVDDAVSYMGLHFPASDIPKVARDLYFQNKVRVIFDTKAPESEISGSK-------LNLKQCMLRGVAPMHKEYMANMGIRGSLSIAVGAQ-VLEGLLVFHSYD 339
            MLY FD DWNG V+ E +  + A SY+GLHFP+SDIP+ AR L+  N VR + D + P S +  +K       ++L QC  R V+ +H+ Y+ NMG+R SL+ A+     L GL+  H+ D
Sbjct:  224 MLYRFDSDWNGIVIAEDRAPEVATSYLGLHFPSSDIPRAARQLFHANSVRTLVDMQRPASALQYTKAYSQAQPVDLGQCHYRDVSDVHRRYLVNMGVRSSLTFALSVNNKLWGLIACHNMD 344          
BLAST of jgi.p|Trimin1|138629 vs. uniprot
Match: A0A0P1BR65_9BASI (Phytochrome-like protein n=2 Tax=Ceraceosorus TaxID=401624 RepID=A0A0P1BR65_9BASI)

HSP 1 Score: 102 bits (253), Expect = 7.370e-23
Identity = 54/121 (44.63%), Postives = 77/121 (63.64%), Query Frame = 1
Query:    1 MLYTFDEDWNGEVLYEFKQVDDAVS-YMGLHFPASDIPKVARDLYFQNKVRVIFDTKAP-------ESEISGSKLNLKQCMLRGVAPMHKEYMANMGIRGSLSIAVGA-QVLEGLLVFHSY 336
            M+Y FDE WNG+V+ E     +    Y GLHFPASDIPK ARDLY  NKVR+++D   P       E E   + +++   +LR ++P+H +Y+ANMG+R S+SI++ A   L GL+  H+Y
Sbjct:  592 MIYQFDEAWNGQVVCELVDWSETHDLYRGLHFPASDIPKQARDLYMINKVRLLYDRDQPSARMVCREQEDLHTPVDMTHAVLRAMSPIHIKYLANMGVRASMSISITAFDQLWGLIALHTY 712          
BLAST of jgi.p|Trimin1|138629 vs. uniprot
Match: A0A8H5HG86_9AGAR (Uncharacterized protein n=1 Tax=Tricholomella constricta TaxID=117010 RepID=A0A8H5HG86_9AGAR)

HSP 1 Score: 102 bits (253), Expect = 7.380e-23
Identity = 59/123 (47.97%), Postives = 79/123 (64.23%), Query Frame = 1
Query:    1 MLYTFDEDWNGEV---LYEFKQVDDAVSYMGLHFPASDIPKVARDLYFQNKVRVIFDTKAPESEIS-GSK------LNLKQCMLRGVAPMHKEYMANMGIRGSLSIAVGA-QVLEGLLVFHSY 336
            M+Y FDE WNG+V   L ++ Q  D   Y GLHFPASDIP  AR LY  NKVR+++D   P + I   SK      LN+  C LR ++P+H +Y+ANMG+R S+SI++ A  +L GL+  HSY
Sbjct:  833 MVYQFDEAWNGQVVAELVDWSQTKDL--YRGLHFPASDIPAQARALYAINKVRILYDRSQPTARIVVRSKEDLEVPLNMTHCYLRAMSPLHIKYLANMGVRASMSISIMAFGMLWGLITCHSY 953          
BLAST of jgi.p|Trimin1|138629 vs. uniprot
Match: A0A7T1HQ21_9SYNE (EAL domain-containing protein n=2 Tax=Synechococcus sp. CBW1002 TaxID=1353134 RepID=A0A7T1HQ21_9SYNE)

HSP 1 Score: 101 bits (252), Expect = 9.800e-23
Identity = 52/121 (42.98%), Postives = 74/121 (61.16%), Query Frame = 1
Query:    1 MLYTFDEDWNGEVLYEFKQVDDAVSYMGLHFPASDIPKVARDLYFQNKVRVIFDTKAPESEISGSK-------LNLKQCMLRGVAPMHKEYMANMGIRGSLSIAVGAQ-VLEGLLVFHSYD 339
            MLY FD DWNG V+ E +  + A SY+GLHFP+SDIP+ AR L+  N VR + D + P S +  +K       ++L QC  R V+ +H+ Y+ NMG+R SL+ A+     L GL+  H+ D
Sbjct:  137 MLYRFDSDWNGIVIAEDRAPEVATSYLGLHFPSSDIPRAARHLFHANSVRTLVDMQRPASALQYTKAYSQAQPVDLGQCHYRDVSDVHRRYLVNMGVRSSLTFALSVNNKLWGLIACHNMD 257          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|138629 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z0I1_9STRA1.010e-77100.00Phytochrome (Fragment) n=1 Tax=Tribonema minus Tax... [more]
A0A835Z406_9STRA6.490e-5671.05Phytochrome (Fragment) n=1 Tax=Tribonema minus Tax... [more]
A0A835Z4F3_9STRA1.260e-2749.58GAF domain-like protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YZ29_9STRA5.500e-2648.74Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A838DLF5_9CHLR4.190e-2348.31GAF domain-containing protein n=1 Tax=Ktedonobacte... [more]
A0A2N1KMN9_9BACT7.050e-2347.11Histidine kinase n=1 Tax=Siphonobacter sp. BAB-540... [more]
A0A7T1MJR0_9SYNE7.130e-2342.98Diguanylate cyclase n=1 Tax=Synechococcus sp. CBW1... [more]
A0A0P1BR65_9BASI7.370e-2344.63Phytochrome-like protein n=2 Tax=Ceraceosorus TaxI... [more]
A0A8H5HG86_9AGAR7.380e-2347.97Uncharacterized protein n=1 Tax=Tricholomella cons... [more]
A0A7T1HQ21_9SYNE9.800e-2342.98EAL domain-containing protein n=2 Tax=Synechococcu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_233contigContig_233:42130..42471 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|138629|gw1.233.18.1
DescriptionPhytochrome region
COG categoryT
Max annot lvl976|Bacteroidetes
EggNOG OGsCOG4251@1|root,COG4251@2|Bacteria,4NDUQ@976|Bacteroidetes,47NHP@768503|Cytophagia
Evalue3.22e-23
Seed ortholog1279009.ADICEAN_02782
Hectar predicted targeting categoryother localisation
TranscriptId138951
TrackFilteredModels1
ProteinId138629
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|138629gene_17629Tribonema minus UTEX_B_3156 geneContig_233 42130..42471 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17629_1exon_17629_1Tribonema minus UTEX_B_3156 exonContig_233 42130..42471 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17629CDS_17629Tribonema minus UTEX_B_3156 CDSContig_233 42130..42471 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|138629Trimin1|138629|gw1.233.18.1Tribonema minus UTEX_B_3156 polypeptideContig_233 42130..42471 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17629 ID=mRNA_17629|Name=jgi.p|Trimin1|138629|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=342bp|location=Sequence derived from alignment at Contig_233:42130..42471- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGTATACATTTGACGAGGATTGGAATGGTGAGGTTTTGTACGAATT
CAAGCAAGTGGATGACGCTGTCTCATATATGGGGTTACATTTTCCAGCAT
CAGATATTCCTAAGGTAGCCCGGGACTTGTACTTCCAGAACAAGGTGCGT
GTAATTTTTGACACTAAAGCACCAGAGTCTGAAATTTCAGGTTCGAAATT
GAACTTGAAGCAGTGTATGTTGCGTGGTGTTGCTCCCATGCACAAGGAGT
ACATGGCAAACATGGGCATCAGGGGGTCTCTCTCGATAGCTGTCGGTGCG
CAGGTGCTAGAGGGTTTACTCGTATTTCACTCATACGATGGC
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protein sequence of jgi.p|Trimin1|138629

>Trimin1|138629|gw1.233.18.1 ID=Trimin1|138629|gw1.233.18.1|Name=jgi.p|Trimin1|138629|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=114bp
MLYTFDEDWNGEVLYEFKQVDDAVSYMGLHFPASDIPKVARDLYFQNKVR
VIFDTKAPESEISGSKLNLKQCMLRGVAPMHKEYMANMGIRGSLSIAVGA
QVLEGLLVFHSYDG
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mRNA from alignment at Contig_233:42130..42471-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17629 ID=mRNA_17629|Name=jgi.p|Trimin1|138629|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=342bp|location=Sequence derived from alignment at Contig_233:42130..42471- (Tribonema minus UTEX_B_3156 )
ATGTTGTATACATTTGACGAGGATTGGAATGGTGAGGTTTTGTACGAATT CAAGCAAGTGGATGACGCTGTCTCATATATGGGGTTACATTTTCCAGCAT CAGATATTCCTAAGGTAGCCCGGGACTTGTACTTCCAGAACAAGGTGCGT GTAATTTTTGACACTAAAGCACCAGAGTCTGAAATTTCAGGTTCGAAATT GAACTTGAAGCAGTGTATGTTGCGTGGTGTTGCTCCCATGCACAAGGAGT ACATGGCAAACATGGGCATCAGGGGGTCTCTCTCGATAGCTGTCGGTGCG CAGGTGCTAGAGGGTTTACTCGTATTTCACTCATACGATGGC
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Coding sequence (CDS) from alignment at Contig_233:42130..42471-

>mRNA_17629 ID=mRNA_17629|Name=jgi.p|Trimin1|138629|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=342bp|location=Sequence derived from alignment at Contig_233:42130..42471- (Tribonema minus UTEX_B_3156 )
ATGTTGTATACATTTGACGAGGATTGGAATGGTGAGGTTTTGTACGAATT
CAAGCAAGTGGATGACGCTGTCTCATATATGGGGTTACATTTTCCAGCAT
CAGATATTCCTAAGGTAGCCCGGGACTTGTACTTCCAGAACAAGGTGCGT
GTAATTTTTGACACTAAAGCACCAGAGTCTGAAATTTCAGGTTCGAAATT
GAACTTGAAGCAGTGTATGTTGCGTGGTGTTGCTCCCATGCACAAGGAGT
ACATGGCAAACATGGGCATCAGGGGGTCTCTCTCGATAGCTGTCGGTGCG
CAGGTGCTAGAGGGTTTACTCGTATTTCACTCATACGATGGC
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