mRNA_17562 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|354297 vs. uniprot
Match: A0A836CGX9_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGX9_9STRA) HSP 1 Score: 922 bits (2384), Expect = 0.000e+0 Identity = 506/507 (99.80%), Postives = 506/507 (99.80%), Query Frame = 3 Query: 111 MLQARAQERQGXXXXXXXXXWSKLATAALALLCPWRXXXXXXPECLHSLRSTFRQRQLLLCHHPXXXXXGSRRSLRCLRFRRPPRNLKIGIQDLMPPAQREGYIGATYQASLHYLSCVSIKFSPVFDLDYTRDVKPMLDIGKEVVMVTEFFDAMPTNLQEIGDGLYDGPLQQFAADMVADGNRPVWIRPMHEFNGDWYSWGTYLGGNNTPENFIRAFQHVTDVFRGAGAAVLMQLSYNCDSANLDVTTDWVTWWPGEEYVDMILCSAYNRAGTDEAHDWETFEQIYADAYARMAALPGMKPLGVAECSCNSVDKFDLTETQHYITNYAQLATGIWDKAQWFIDAFADFQTKFPRVQQRRCAARHAARRRQGAAQHAGGALPAPAPGWFFQNKDDGLWDLSSDRERRIFGELMLQYTIATPVPIVLWKPDDNAPIAPEWGGPPPEGXXXXXXXXXXVDPYAPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPPPVQNDFNGDGVPDY 1631 MLQARAQERQGXXXXXXXX WSKLATAALALLCPWRXXXXXXPECLHSLRSTFRQRQLLLCHHPXXXXXGSRRSLRCLRFRRPPRNLKIGIQDLMPPAQREGYIGATYQASLHYLSCVSIKFSPVFDLDYTRDVKPMLDIGKEVVMVTEFFDAMPTNLQEIGDGLYDGPLQQFAADMVADGNRPVWIRPMHEFNGDWYSWGTYLGGNNTPENFIRAFQHVTDVFRGAGAAVLMQLSYNCDSANLDVTTDWVTWWPGEEYVDMILCSAYNRAGTDEAHDWETFEQIYADAYARMAALPGMKPLGVAECSCNSVDKFDLTETQHYITNYAQLATGIWDKAQWFIDAFADFQTKFPRVQQRRCAARHAARRRQGAAQHAGGALPAPAPGWFFQNKDDGLWDLSSDRERRIFGELMLQYTIATPVPIVLWKPDDNAPIAPEWGGPPPEGXXXXXXXXXXVDPYAPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPPPVQNDFNGDGVPDY Sbjct: 1 MLQARAQERQGXXXXXXXXLWSKLATAALALLCPWRXXXXXXPECLHSLRSTFRQRQLLLCHHPXXXXXGSRRSLRCLRFRRPPRNLKIGIQDLMPPAQREGYIGATYQASLHYLSCVSIKFSPVFDLDYTRDVKPMLDIGKEVVMVTEFFDAMPTNLQEIGDGLYDGPLQQFAADMVADGNRPVWIRPMHEFNGDWYSWGTYLGGNNTPENFIRAFQHVTDVFRGAGAAVLMQLSYNCDSANLDVTTDWVTWWPGEEYVDMILCSAYNRAGTDEAHDWETFEQIYADAYARMAALPGMKPLGVAECSCNSVDKFDLTETQHYITNYAQLATGIWDKAQWFIDAFADFQTKFPRVQQRRCAARHAARRRQGAAQHAGGALPAPAPGWFFQNKDDGLWDLSSDRERRIFGELMLQYTIATPVPIVLWKPDDNAPIAPEWGGPPPEGXXXXXXXXXXVDPYAPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPPPVQNDFNGDGVPDY 507
BLAST of jgi.p|Trimin1|354297 vs. uniprot
Match: A0A836CJI7_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJI7_9STRA) HSP 1 Score: 321 bits (822), Expect = 9.530e-99 Identity = 170/336 (50.60%), Postives = 203/336 (60.42%), Query Frame = 3 Query: 357 PPRNLKIGIQDLMPPAQREGYIGATYQASLHYLSCVSIKFSPVFDLDYTRDVKPMLDIGKEVVMVTEFFD-AMPTNLQEIGDGLYDGPLQQFAADMVADGNRPVWIRPMHEFNGDWYSWGTYLGGNNTPENFIRAFQHVTDVFRGAGAAVLMQLSYNCDSANLDVTTDWVTWWPGEEYVDMILCSAYNRAGTDEAH-DWETFEQIYADAYARMAALPGMKPLGVAECSCNSVDKFDLTETQHYITNYAQLATGIWDKAQWFIDAFADFQTKFPRVQQRRCAARHAARRRQGAAQHAGGALPAPAPGWFFQNKDDGLWDLSSDRERRIFGELMLQYT 1358 P + LK+ I D M P R+ +GA +Q V +KF PV + Y VKP LD G EVVMVTEF D + TNLQEIGDGLYD L QF ++ DGNR VWIRPMHEFNGDWY WGTY GG NT +NFIRA+QH+ DVF A V QL+YNCD+A DVTT + WWPG+EYVDM++CS YNRAG+DE H +W TF+ +YA+AY +MAALPG+KPLGV E SCN G +DKAQW DAFADF T F RV Q WF QNKDDG WDL++ E + FG+ + +YT Sbjct: 31 PAKRLKVAILDEMEPNARQAELGAQFQ--------VVVKFQPVQQMRYPFLVKPYLDQGYEVVMVTEFLDDVLVTNLQEIGDGLYDDYLYQFIDELKDDGNRAVWIRPMHEFNGDWYPWGTYHGGTNTIDNFIRAWQHIHDVFTVKKANVKFQLAYNCDNAQDDVTTPFTAWWPGDEYVDMVVCSGYNRAGSDENHMEWLTFQDVYANAYNQMAALPGLKPLGVGEMSCNDF--------------------GDYDKAQWIRDAFADFDTTFTRVTQ---------------------------VTWFLQNKDDGRWDLNTPDEIQAFGDCLREYT 311
BLAST of jgi.p|Trimin1|354297 vs. uniprot
Match: A0A836CGL5_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGL5_9STRA) HSP 1 Score: 272 bits (696), Expect = 5.740e-83 Identity = 150/353 (42.49%), Postives = 195/353 (55.24%), Query Frame = 3 Query: 369 LKIGIQDLMPPAQREGYIGATYQASLHYLSCVSIKFSPVFDLDYTRDVKPMLDIGKEVVMVTEFFDAMP-TNLQEIGDGLYDGPLQQFAADMVADGNRPVWIRPMHEFNGDWYSWGTYLGGNNTPENFIRAFQHVTDVFRGAGAAVLMQLSYNCDSANLDVTTDWVTWWPGEEYVDMILCSAYNRAGTDEAHD-WETFEQIYADAYARMAALPGMKPLGVAECSCNSVDKFDLTETQHYITNYAQLATGIWDKAQWFIDAFADFQTKFPRVQQRRCAARHAARRRQGAAQHAGGALPAPAPGWFFQNKDDGLWDLSSDRERRIFGELMLQYTIATPVPIVLWKPDDNAPIAPE 1421 L IG+ D M P R+ +GA +QA +KF V + Y VKP LD G + VMV EF DA TNL++I +GLYD L +F +++ DGNR VW+RP+HEFNGDWY WGTY GG+NT F RA++HV + GA + QL+YNC + D TT ++ WWPGE+YVDM++CS YNRAG+D H W TF +++ AY +M LPGMKPLGV E SCN+ + D KAQW DAF DF +PR++ H WF QNK+DG WDL+S E FGE +++YT P I P D P+ P+ Sbjct: 70 LMIGLSDNMLPVARQAELGAKFQAV--------VKFQSVQKMRYPFLVKPHLDAGFQSVMVMEFLDATRHTNLKQIANGLYDKYLYKFVDELMDDGNREVWVRPLHEFNGDWYPWGTYRGGDNTKRMFKRAWRHVHWILTNKGANIKFQLAYNCVNGQNDQTTPFLDWWPGEQYVDMVVCSGYNRAGSDADHQQWLTFPEVFGAAYEQMLTLPGMKPLGVGETSCNNFEDND--------------------KAQWIRDAFYDFVNTYPRIE-------HVT--------------------WFLQNKNDGRWDLNSPEEIAAFGESLIEYT---PQNI----PQDLPPLPPQ 360
BLAST of jgi.p|Trimin1|354297 vs. uniprot
Match: A0A835Z6S0_9STRA (GH26 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6S0_9STRA) HSP 1 Score: 281 bits (718), Expect = 5.390e-79 Identity = 156/335 (46.57%), Postives = 187/335 (55.82%), Query Frame = 3 Query: 363 RNLKIGIQDLMPPAQREGYIGATYQASLHYLSCVSIKFSPVFDLDYTRDVKPMLDIGKEVVMVTEFFD-AMPTNLQEIGDGLYDGPLQQFAADMVADGNRPVWIRPMHEFNGDWYSWGTYLGGNNTPENFIRAFQHVTDVFRGAGAAVLMQLSYNCDSANLDVTTDWVTWWPGEEYVDMILCSAYNRAGTDEAH-DWETFEQIYADAYARMAALPGMKPLGVAECSCNSVDKFDLTETQHYITNYAQLATGIWDKAQWFIDAFADFQTKFPRVQQRRCAARHAARRRQGAAQHAGGALPAPAPGWFFQNKD-DGLWDLSSDRERRIFGELMLQYT 1358 R + I I D M P R+ +GA +Q V +KF PV + Y VKP LD G +VVMVTEF D + TNL +IG G YD L QF + ADGN+ VWIRPMHEFNGDWY WGTY GG NT +NFIRA++HV DVF A V QL+YNCD+ DVTT + WWPG YVDM++CS YNRAGTDE H +W TF+ +Y AY +M ALPG KPLGV E SCN + +D KAQW DAF DF +PRV+Q WF QNK+ DG WDL+S + F + YT Sbjct: 1036 RKVDIAILDEMEPNARQAELGAQFQ--------VVVKFQPVQSMRYPFLVKPYLDQGFQVVMVTEFLDNELLTNLWQIGSGKYDDYLYQFMDEHKADGNQEVWIRPMHEFNGDWYPWGTYHGGFNTKKNFIRAWRHVHDVFTVKKANVKFQLAYNCDNGQDDVTTPFTDWWPGMNYVDMVVCSGYNRAGTDENHMEWLTFQDVYGAAYEQMLALPGYKPLGVGEMSCNDFEGYD--------------------KAQWITDAFYDFVNTYPRVKQ---------------------------VTWFLQNKEGDGRWDLNSPEQIAAFANGLKLYT 1315
BLAST of jgi.p|Trimin1|354297 vs. uniprot
Match: A0A835YWE9_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWE9_9STRA) HSP 1 Score: 260 bits (664), Expect = 1.210e-78 Identity = 139/331 (41.99%), Postives = 182/331 (54.98%), Query Frame = 3 Query: 369 LKIGIQDLMPPAQREGYIGATYQASLHYLSCVSIKFSPVFDLDYTRDVKPMLDIGKEVVMVTEFFDAMPTNLQEIGDGLYDGPLQQFAADMVADGNRPVWIRPMHEFNGDWYSWGTYLGGNNTPENFIRAFQHVTDVFRGAGAAVLMQLSYNCDSANLDVTTDWVTWWPGEEYVDMILCSAYNRAGTDEAH-DWETFEQIYADAYARMAALPGMKPLGVAECSCNSVDKFDLTETQHYITNYAQLATGIWDKAQWFIDAFADFQTKFPRVQQRRCAARHAARRRQGAAQHAGGALPAPAPGWFFQNKDDGLWDLSSDRERRIFGELMLQYT 1358 L +GI D++ P RE + A +Q V KF + + Y VK LD G +VV+V +F D + TNL++IGDGLYD L +FA +++ DGNR VW+RPMHEFNGDWY WGTY+GG NT +NFIRA++HV V GA + QL YNC + D T + WWPG++ VDM++CSAYNRAGTD+ H W+T+ ++ Y +MAALP PLGV E + DKA W DAFA F T +PRV+Q WF ++KDDG WDL+S E F + +LQYT Sbjct: 28 LDVGIADILEPVYREEELNAQFQ--------VVTKFGFIKTMRYPFLVKNYLDQGFKVVLVVQFLDTLTTNLKQIGDGLYDKYLYKFADELIKDGNREVWVRPMHEFNGDWYPWGTYMGGTNTIQNFIRAYRHVYQVLTAKGANIKFQLGYNCVNGANDKKTPFSAWWPGDDVVDMVVCSAYNRAGTDQFHTQWQTWPDVFQLGYDQMAALPTSAPLGVGEMGT--------------------VGMAGEDKAGWIRDAFAAFPTLYPRVEQIT---------------------------WFLEDKDDGEWDLNSADEIEAFRDSLLQYT 303
BLAST of jgi.p|Trimin1|354297 vs. uniprot
Match: A0A836CHJ5_9STRA (GH26 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHJ5_9STRA) HSP 1 Score: 255 bits (651), Expect = 3.900e-74 Identity = 126/237 (53.16%), Postives = 156/237 (65.82%), Query Frame = 3 Query: 354 RPPRNLKIGIQDLMPPAQREGYIGATYQASLHYLSCVSIKFSPVFDLDYTRDVKPMLDIGKEVVMVTEFFD-AMPTNLQEIGDGLYDGPLQQFAADMVADGNRPVWIRPMHEFNGDWYSWGTYLGGNNTPENFIRAFQHVTDVFRGAGAAVLMQLSYNCDSANLDVTTDWVTWWPGEEYVDMILCSAYNRAGTDEAHD-WETFEQIYADAYARMAALPGMKPLGVAECSCNSVDKFD 1058 +P + L IGI D M P RE +GA +Q V +KF PV + Y VKP LD G +VVMVTEF D + TNL+EIGDGLYD L +F +++ DGNR VW+RPMHEFNGDWY WGTY+GG NT NF RA+ HV DVF GA + QL+YNC++ T + WWPGE YVDM++CS YNRAG+D H W+TF+++Y AY +MA LPG KPLGV E SC + D Sbjct: 134 KPRQPLTIGILDAMEPNAREAELGAEFQ--------VVVKFQPVQQMRYPFLVKPYLDQGFQVVMVTEFLDPTLKTNLKEIGDGLYDAYLYEFVDELMNDGNREVWVRPMHEFNGDWYPWGTYMGGTNTIANFKRAWLHVHDVFTNKGANIKFQLAYNCENGQ-GSDTPFKAWWPGENYVDMVVCSGYNRAGSDPEHMVWQTFQEVYGPAYQQMADLPGRKPLGVGETSCTEFEDND 361
BLAST of jgi.p|Trimin1|354297 vs. uniprot
Match: A0A835Z9M6_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9M6_9STRA) HSP 1 Score: 249 bits (637), Expect = 6.300e-74 Identity = 145/337 (43.03%), Postives = 184/337 (54.60%), Query Frame = 3 Query: 357 PPRNLKIGIQDLMPPAQREGYIGATYQASLHYLSCVSIKFSPVFDLDYTRDVKPMLDIGKEVVMVTEFFD-AMPTNLQEIGDGLYDGPLQQFAADMVADGNRPVWIRPMHEFNGDWYSWGTYLGGNNTPENFIRAFQHVTDVFRGAGAAVLMQLSYNCDSANLDVTTDWVTWWPGEEYVDMILCSAYNRAGTD--EAHDWETFEQIYADAYARMAALPGMKPLGVAECSCNSVDKFDLTETQHYITNYAQLATGIWDKAQWFIDAFADFQTKFPRVQQRRCAARHAARRRQGAAQHAGGALPAPAPGWFFQNKDDGLWDLSSDRERRIFGELMLQYT 1358 PP+ + I DLM P RE +G ++ +KF + L Y VK LD G EVVMV EF D + TNL I DG YD L +F +M+ DGNR V IRP+HEFNGDWY+WGT GGNN FI A+QH+ VF A V QL+YNC S L+ T + WWPG +YVDM++CS YNRAG+ EA +W++FE+++A AYA+MAAL PLG+ E T+ +LA +DKAQW DAFA T FPR++Q WF QNKDDG WDL+S+ + F E +LQYT Sbjct: 55 PPQLYDVAILDLMEPGHREQELGGAQFQTV-------VKFGEIKTLRYPNLVKGYLDQGFEVVMVMEFLDDEVKTNLDLIADGYYDDYLYRFIDEMIDDGNRAVTIRPLHEFNGDWYAWGTQAGGNNDIPTFIAAWQHIHRVFTSKRANVQFQLAYNCKSG-LNDDTPFTAWWPGAQYVDMVVCSGYNRAGSPGYEAVEWQSFEEMFAPAYAQMAALNPTVPLGIGE------------------TSTVELAG--YDKAQWIRDAFASMATAFPRLRQAT---------------------------WFLQNKDDGEWDLNSEEQIAAFSEGLLQYT 336
BLAST of jgi.p|Trimin1|354297 vs. uniprot
Match: A0A835Z4M7_9STRA (Glycoside hydrolase superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4M7_9STRA) HSP 1 Score: 241 bits (616), Expect = 1.570e-72 Identity = 140/331 (42.30%), Postives = 177/331 (53.47%), Query Frame = 3 Query: 375 IGIQDLMPPAQREGYIGATYQASLHYLSCVSIKFSPVFDLDYTRDVKPMLDIGKEVVMVTEFFD-AMPTNLQEIGDGLYDGPLQQFAADMVADGNRPVWIRPMHEFNGDWYSWGTYLGGNNTPENFIRAFQHVTDVFRGAGAAVLMQLSYNCDSANLDVTTDWVTWWPGEEYVDMILCSAYNRAGTDEAHD--WETFEQIYADAYARMAALPGMKPLGVAECSCNSVDKFDLTETQHYITNYAQLATGIWDKAQWFIDAFADFQTKFPRVQQRRCAARHAARRRQGAAQHAGGALPAPAPGWFFQNKDDGLWDLSSDRERRIFGELMLQYT 1358 + I DLM P RE +G ++ +KF + L Y VK LD G EVVMV EF D + TNL I DG YD L +F +M+ DGNR V IRP+HEFNGDWY+WGT GGNN FI A+QH+ VF A V QL+YNC + D T + WWPG +YVDM++CS YNRAG+ D W++FE ++A AYA+MAAL PLG+ E T+ +LA +DKAQW DAFA T FPR++Q WF QNKDDG WDL+S+ + F + +LQYT Sbjct: 1 VAILDLMEPGHREQELGGAQFQTV-------VKFGEIKTLRYPNLVKGYLDQGFEVVMVMEFLDDEVKTNLDLIADGYYDDYLYRFIDEMIDDGNRAVTIRPLHEFNGDWYAWGTQAGGNNDIPTFIAAWQHIHRVFTSKRANVQFQLAYNCKNGQND-DTPFTAWWPGAQYVDMVVCSGYNRAGSPGYEDVEWQSFEDMFAPAYAQMAALNPTVPLGIGE------------------TSTVELAG--YDKAQWIRDAFASMATAFPRLRQAT---------------------------WFLQNKDDGEWDLNSEEQITAFSKGLLQYT 276
BLAST of jgi.p|Trimin1|354297 vs. uniprot
Match: A0A835YVC0_9STRA (Glycoside hydrolase superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVC0_9STRA) HSP 1 Score: 233 bits (595), Expect = 1.160e-69 Identity = 141/313 (45.05%), Postives = 163/313 (52.08%), Query Frame = 3 Query: 423 GATYQASLHYLSCVSIKFSPVFDLDYTRDVKPMLDIGKEVVMVTEFFDAMPTNLQEIGDGLYDGPLQQFAADMVADGNRPVWIRPMHEFNGDWYSWGTYLGGNNTPENFIRAFQHVTDVFRGAGAAVLMQLSYNCDSANLDVTTDWVTWWPGEEYVDMILCSAYNRAGTDEAHD-WETFEQIYADAYARMAALPGMKPLGVAECSCNSVDKFDLTETQHYITNYAQLATGIWDKAQWFIDAFADFQTKFPRVQQRRCAARHAARRRQGAAQHAGGALPAPAPGWFFQNKDDGLWDLSSDRERRIFGELMLQYT 1358 GA +Q + Y S + Y VKP LD GK VV+VTEF D NLQ IGDG +D L +F D ADGNR VWIRPMHEFNGDWYSWGTY GN+ F RAFQHV VF+ GA QL YNC + D T+ + WWPG + VDMILCS YNRAG D H W++F +Y+ Y +MAAL G KPLGVAE S T Q Y K QW DAF KF RV+Q C WF NKD G W L+SD ER FG+ + QY+ Sbjct: 1 GAKFQTVVKYQSVTGLPGQ------YKYLVKPYLDAGKSVVLVTEFIDGSYANLQAIGDGKFDWALNKFIDDWKADGNRQVWIRPMHEFNGDWYSWGTYRNGNSQAL-FKRAFQHVAYVFKNRGANAKFQLGYNCVNPRNDGTS-FSNWWPGGDVVDMILCSGYNRAGLDSNHQSWQSFSDVYSSGYYKMAALDGGKPLGVAETSS--------TTWQSY------------SKPQWIKDAFNALVNKFTRVEQ--C-------------------------NWFLINKD-GNWGLNSDDERHAFGDSINQYS 257
BLAST of jgi.p|Trimin1|354297 vs. uniprot
Match: A0A836CHF8_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHF8_9STRA) HSP 1 Score: 231 bits (588), Expect = 1.920e-67 Identity = 135/324 (41.67%), Postives = 173/324 (53.40%), Query Frame = 3 Query: 396 PPAQREGYIGATYQASLHYLSCVSIKFSPVFDLDYTRDVKPMLDIGKEVVMVTEFFD-AMPTNLQEIGDGLYDGPLQQFAADMVADGNRPVWIRPMHEFNGDWYSWGTYLGGNNTPENFIRAFQHVTDVFRGAGAAVLMQLSYNCDSANLDVTTDWVTWWPGEEYVDMILCSAYNRAGTD--EAHDWETFEQIYADAYARMAALPGMKPLGVAECSCNSVDKFDLTETQHYITNYAQLATGIWDKAQWFIDAFADFQTKFPRVQQRRCAARHAARRRQGAAQHAGGALPAPAPGWFFQNKDDGLWDLSSDRERRIFGELMLQYT 1358 PP + + GA +Q +KF + L Y VK LD G +VVMV EF D + TNL I G YD + QF +M+ADGNR V IRP+HE NGDWY+WGT GGNN FI A+QH+ VF A V QL+YNC + D T + WWPG +YVDM++CS YNRAG+ EA +W++FE+++A AYA+MAAL PLG+ E T+ +LA +DKAQW DAFA T FPR++Q WF QNK+DG WDL+S + F E +L YT Sbjct: 3 PPHREQELGGAQFQTV--------VKFGEIKTLRYPNLVKGYLDQGFQVVMVMEFLDDEVETNLDLIAQGYYDDYIYQFIDEMIADGNRLVTIRPLHEMNGDWYAWGTQAGGNNDIPTFIAAWQHIHRVFASKRANVQFQLAYNCKNGQND-DTPFTAWWPGAQYVDMVVCSGYNRAGSPGYEAVEWQSFEEMFAPAYAQMAALNPTVPLGIGE------------------TSTVELAG--YDKAQWIRDAFASMATAFPRLRQAT---------------------------WFLQNKNDGKWDLNSAEQIAAFSEGLLAYT 270 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354297 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_17562 ID=mRNA_17562|Name=jgi.p|Trimin1|354297|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1634bp|location=Sequence derived from alignment at Contig_227:49872..54930- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GTGAATACATAGCTGCACACGACGCTGGCGTGGCGGACACGCACGTGCTCback to top protein sequence of jgi.p|Trimin1|354297 >Trimin1|354297|estExt_Genemark1.C_Ctg_2270009 ID=Trimin1|354297|estExt_Genemark1.C_Ctg_2270009|Name=jgi.p|Trimin1|354297|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=508bp MLQARAQERQGRAQERSGGLWSKLATAALALLCPWRCLLCPWPECLHSLRback to top mRNA from alignment at Contig_227:49872..54930- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_17562 ID=mRNA_17562|Name=jgi.p|Trimin1|354297|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5059bp|location=Sequence derived from alignment at Contig_227:49872..54930- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_227:49872..54930- >mRNA_17562 ID=mRNA_17562|Name=jgi.p|Trimin1|354297|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1524bp|location=Sequence derived from alignment at Contig_227:49872..54930- (Tribonema minus UTEX_B_3156 )back to top |