mRNA_17561 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|180741
Unique Name	mRNA_17561
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|180741 vs. uniprot
Match: A0A836CH81_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH81_9STRA)

HSP 1 Score: 145 bits (367), Expect = 4.440e-34
Identity = 543/543 (100.00%), Postives = 543/543 (100.00%), Query Frame = 1

Query:    1 CLQLTALPECVGELSALTSLDLSSCGGXXXXXXXXXXXXXXXXXRLGETPLSSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNIHYCAIRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTALALNSCWRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCELTXXXXXXXXXXXXXXXXXXNCTALKTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCYYALRDSIGDLTALKSLSLCCGARPQLXXXXXXXXXXXXXXXXXXAQLTALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVAHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTALALNACGRLAXXXXXXXXXXXXXXXDLTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAPVVAFAEAHAQRIRPGEAQSC 1629
            CLQLTALPECVGELSALTSLDLSSCGGXXXXXXXXXXXXXXXXXRLGETPLSSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNIHYCAIRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTALALNSCWRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCELTXXXXXXXXXXXXXXXXXXNCTALKTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCYYALRDSIGDLTALKSLSLCCGARPQLXXXXXXXXXXXXXXXXXXAQLTALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVAHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTALALNACGRLAXXXXXXXXXXXXXXXDLTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAPVVAFAEAHAQRIRPGEAQSC
Sbjct:    1 CLQLTALPECVGELSALTSLDLSSCGGXXXXXXXXXXXXXXXXXRLGETPLSSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNIHYCAIRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTALALNSCWRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCELTXXXXXXXXXXXXXXXXXXNCTALKTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCYYALRDSIGDLTALKSLSLCCGARPQLXXXXXXXXXXXXXXXXXXAQLTALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVAHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTALALNACGRLAXXXXXXXXXXXXXXXDLTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAPVVAFAEAHAQRIRPGEAQSC 543

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|180741 vs. uniprot

BLAST of jgi.p|Trimin1|180741 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A836CH81_9STRA	4.440e-34	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_227	contig	Contig_227:44797..47910 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|180741\|e_gw1.227.40.1
Hectar predicted targeting category	other localisation
TranscriptId	181063
Track	FilteredModels1
ProteinId	180741

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|180741	gene_17561	Tribonema minus UTEX_B_3156	gene	Contig_227 44797..47910 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_17561_1	exon_17561_1	Tribonema minus UTEX_B_3156	exon	Contig_227 44797..45370 +
exon_17561_2	exon_17561_2	Tribonema minus UTEX_B_3156	exon	Contig_227 46853..47910 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_17561	CDS_17561	Tribonema minus UTEX_B_3156	CDS	Contig_227 44797..45370 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|180741	Trimin1\|180741\|e_gw1.227.40.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_227 44797..47910 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_227:44797..47910+
coding sequence from alignment at Contig_227:44797..47910+

spliced messenger RNA

>mRNA_17561 ID=mRNA_17561|Name=jgi.p|Trimin1|180741|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1632bp|location=Sequence derived from alignment at Contig_227:44797..47910+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGCCTGCAGCTTACGGCACTGCCGGAGTGCGTCGGCGAGCTCTCGGCGCT
GACGTCGCTGGACCTGAGCAGCTGCGGCGGGCTCACGGCGCTGCCGGACT
CCATCGGCGGCCTGCGCGCGCTGACGGACCTGCGCTTGGGCGAAACACCG
CTCAGCAGCCGGCCGCGCAGCTTCGGCGGCCTCGCGTCGCTGACGTCGCT
ACGCCTGTCCGGCTGCGCGTCCCTCACCGCGCTGCCGGACAGCATTGGCG
CGCTGGCGGCACTCACCCACCTGAACATACACTACTGCGCCATTAGGCGC
CTCCCTGATGCCGCCGGTGCGCTGCGCGCGCTGCAGACGCTCGAGGTCAC
CTGCCACACGCTGGCGCGTCTACCGGACACCATCGGCGACCTGGCAGCGC
TGACGGCGCTCGCGCTGAACTCGTGCTGGCGTCTCGCGTACCTGCCGGAG
TCCATTGGCGCCCTGCGGTCGCTCACACAGCTCGATCTGACCGACTGCCG
CCAGCTGACGAGGCTGCCAGAGGGCACGGGCGACCTGGCGGCGCTGCGCA
GGCTCGAGTTGGCGGGCTGCGAGCTGACGCACTTGCCCGATGACATCGGC
GACCTGGCTGCACTGACCACACTCAGCCTACGCAACTGCACAGCCCTCAA
GACGCTGCCGGAAAGCATCGGCAGTCTCATCGCGCTGACGCAACTGGACC
TGACCGGCTGCCGTCAGCTGAGAGCCTTGCCTGACAGCATCGGCAATCTC
CGCGCATTGACAATGCTGGACCTGAGCAGCTGCTACTACGCGCTGCGGGA
CAGCATCGGTGACCTGACCGCGTTGAAATCGCTGAGCCTCTGCTGTGGCG
CTCGACCCCAGCTGCCGGACAGCATCTGCGATCTGGCCGCGTTGACAGCG
CTTAAACTGAGCAGCTGTGCGCAGCTCACGGCGCTGCCGGACCGCGTCGG
CGAGCTCTCGGCGCTGACGTCGCTGGACCTGAGCAGCTGCTTCAAGCTCG
CGGCGCTGCCGGATTCCATCGGCGGCCTGCGCGCGCTGACGGACCTTCGC
TTGAGCGAAGCATCATCGCTCAGCAGCCTGCCGGGCAGCATCGGCGGCCT
CGCCGCGCTGGCGTCGCTCCGCCTGTCCGGCTGCCTGTCTCTCACCGCGC
TGCCGGAGAGCATGGGCGCGCTAGCAGCGCTCACTTACCTAGGCATACAC
GGGTGCGCTGTCGCGCACCTCCCCGACGCGACCGGCGCGCTGCGCGCGCT
GCGGATGCTCGAGGTCTCCTGCCGCGCGCTGACGCGTCTGCCGGACACCA
TCGGCGACCTGGCGGCGCTGACGGCGCTCGCGCTGAACGCGTGCGGGCGT
CTAGCGTCGCTGCCGGAGTCTACCGGCGCCCTGCGGTCGCTCACGCAGCT
CGATCTGACCAACTGCCGCCAGCTGACGAGGCTGCCGGAGAGCACGGGCG
ACCTGGCGGCGCTGCGGAGGCTCGAGCTGGCGGGCTGCGAGGGTCTGTCG
AGCCTGCCGACGACGCTCGTGCGGCTGCGCCAGCTCACGCAGTTGAGCGT
TGCTAGATGTCAGGCGCCCGTCGTAGCGTTTGCTGAAGCGCATGCTCAGC
GGATTCGCCCTGGTGAGGCACAGAGCTGTTGA

protein sequence of jgi.p|Trimin1|180741

>Trimin1|180741|e_gw1.227.40.1 ID=Trimin1|180741|e_gw1.227.40.1|Name=jgi.p|Trimin1|180741|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=544bp
CLQLTALPECVGELSALTSLDLSSCGGLTALPDSIGGLRALTDLRLGETP
LSSRPRSFGGLASLTSLRLSGCASLTALPDSIGALAALTHLNIHYCAIRR
LPDAAGALRALQTLEVTCHTLARLPDTIGDLAALTALALNSCWRLAYLPE
SIGALRSLTQLDLTDCRQLTRLPEGTGDLAALRRLELAGCELTHLPDDIG
DLAALTTLSLRNCTALKTLPESIGSLIALTQLDLTGCRQLRALPDSIGNL
RALTMLDLSSCYYALRDSIGDLTALKSLSLCCGARPQLPDSICDLAALTA
LKLSSCAQLTALPDRVGELSALTSLDLSSCFKLAALPDSIGGLRALTDLR
LSEASSLSSLPGSIGGLAALASLRLSGCLSLTALPESMGALAALTYLGIH
GCAVAHLPDATGALRALRMLEVSCRALTRLPDTIGDLAALTALALNACGR
LASLPESTGALRSLTQLDLTNCRQLTRLPESTGDLAALRRLELAGCEGLS
SLPTTLVRLRQLTQLSVARCQAPVVAFAEAHAQRIRPGEAQSC*

mRNA from alignment at Contig_227:44797..47910+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_17561 ID=mRNA_17561|Name=jgi.p|Trimin1|180741|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3114bp|location=Sequence derived from alignment at Contig_227:44797..47910+ (Tribonema minus UTEX_B_3156 )
TGCCTGCAGCTTACGGCACTGCCGGAGTGCGTCGGCGAGCTCTCGGCGCT
GACGTCGCTGGACCTGAGCAGCTGCGGCGGGCTCACGGCGCTGCCGGACT
CCATCGGCGGCCTGCGCGCGCTGACGGACCTGCGCTTGGGCGAAACACCG
CTCAGCAGCCGGCCGCGCAGCTTCGGCGGCCTCGCGTCGCTGACGTCGCT
ACGCCTGTCCGGCTGCGCGTCCCTCACCGCGCTGCCGGACAGCATTGGCG
CGCTGGCGGCACTCACCCACCTGAACATACACTACTGCGCCATTAGGCGC
CTCCCTGATGCCGCCGGTGCGCTGCGCGCGCTGCAGACGCTCGAGGTCAC
CTGCCACACGCTGGCGCGTCTACCGGACACCATCGGCGACCTGGCAGCGC
TGACGGCGCTCGCGCTGAACTCGTGCTGGCGTCTCGCGTACCTGCCGGAG
TCCATTGGCGCCCTGCGGTCGCTCACACAGCTCGATCTGACCGACTGCCG
CCAGCTGACGAGGCTGCCAGAGGGCACGGGCGACCTGGCGGCGCTGCGCA
GGCTCGAGTTGGCGGGCTGCGAGCGTCTGTCGAGCCTGCCGACGACGCTC
GTGCGACTGCGCCAGCTCACGCAGTTGAGCGTTGCTGGATGTCAGGCGCC
CGGCGTAGCGTACGCTGAAGCGCATCATCAGCGGATTCGACACGGTCAGG
CGCAGAGCTTTTGAGTCCTCTCCAGTCGGTGCAACGGTCGTAGGCGAGGG
CGAAGTCCTGGCGACTAGTGCTACACAAAAGAGTAGTGTTCGGCGGCCAG
GCATGCATGCACGCGCGTGGCGCCGACACTATGCATGTATTTCAGTGCGA
CTGTGCGCTGCGTTGTGCTGCTTGCCTGTTCTTCAATGCCACACATGACA
CCAGCATGCACACAGGTTGCACCGCTGTACACAAGTCTGTGCGCACATGG
AACACTATCCAAAGACCGCAGGGTATTGATCAATTGTGCCACCTGCCTTG
CACGCACAACAATTTTGGTCGTGCACCTTATGCGCTTGTCACTTGCAACC
GGTCTACATGCATGGAATTGATTGCTGCCCTGATAGGATTCACTCTGTGT
GTGTGCATGGACATGAGAGCCCCGTACTTTGATGCAGCGCATTGCACTGC
TTCACTTCCCTGCTTAGCCAACCCAGCCAACCCACGTAAGCTCTCTTGTG
CAGTCCATCGATGCGACGTGCACGTTCCTGGTAAGTGCTTACATCTGCAA
GCCAAGAGCTGTTTTGGAGCGTTGCCAGGCTGTGATCGGCGGAGTTGGTT
GAAGTCGCTCTGCTTTGAAGTTTTGTGAAGTTGCGTGAAGAAAGTTCACA
CACACACACAGTCCACGCCCACAGCAAGCGCACAATTGCGCAATGGACGT
CCCAGCGGGAGCGGATTTTTGTGCCGACGCGAACGATTCGCTGGGTACGT
CAGGCAGTGGTGGAAGCTGCAGCGGTAGCGCAAGCGCGGCAGTTACAGGC
TGCGATGGTAGTGGTGCAGCGACAAAGAAGTGCCGCAACAGCGCCGACAG
CGAGGAGGACGTGAGCCAGGACCTGCTCGTTCAGGTGCTCACGGTGATGG
CGCAGAACCGCCTGCTTCCCAAGGCTGCTTGGAGCCTGAACATGGTCTTT
CTCCGGAAGGTGAGCCCTTTGGCACGCCTCGTCCTCGAAGGACCACGACC
ACCTGGTGCGGCAGCACAGGAATTCGCCACCAGGAAAGTTGTGGAGCTGG
AGCTTCAGGGAGCATTCGAGGTTGATCCCCTTCCCGCCTTGAGCTCGAGC
TCTACTACCCCTAACGACGATGCTACAGGTGCTACGCGAACATTCAACAA
CTCATTCAGAGAGGTCCAGGACTTGACCCTTCGCCGATTTGAAGGCACGC
TAAAGCTCATACCAAGCTCCCTGCAGAACCTCCACATGGCAGAATGCGAC
TTGGCGACAATGCTGCCGATTCTGCGCGCGGCAGTCTGCGCCTCGGATTC
AGGGCGCCAGATCAATCCGCTGACACTAGTCAAGTCGTTTTCCGCACAAT
GCGCAGTGACGCACTTGCCCGATGACATCGGCGACCTGGCTGCACTGACC
ACACTCAGCCTACGCAACTGCACAGCCCTCAAGACGCTGCCGGAAAGCAT
CGGCAGTCTCATCGCGCTGACGCAACTGGACCTGACCGGCTGCCGTCAGC
TGAGAGCCTTGCCTGACAGCATCGGCAATCTCCGCGCATTGACAATGCTG
GACCTGAGCAGCTGCTACTACGCGCTGCGGGACAGCATCGGTGACCTGAC
CGCGTTGAAATCGCTGAGCCTCTGCTGTGGCGCTCGACCCCAGCTGCCGG
ACAGCATCTGCGATCTGGCCGCGTTGACAGCGCTTAAACTGAGCAGCTGT
GCGCAGCTCACGGCGCTGCCGGACCGCGTCGGCGAGCTCTCGGCGCTGAC
GTCGCTGGACCTGAGCAGCTGCTTCAAGCTCGCGGCGCTGCCGGATTCCA
TCGGCGGCCTGCGCGCGCTGACGGACCTTCGCTTGAGCGAAGCATCATCG
CTCAGCAGCCTGCCGGGCAGCATCGGCGGCCTCGCCGCGCTGGCGTCGCT
CCGCCTGTCCGGCTGCCTGTCTCTCACCGCGCTGCCGGAGAGCATGGGCG
CGCTAGCAGCGCTCACTTACCTAGGCATACACGGGTGCGCTGTCGCGCAC
CTCCCCGACGCGACCGGCGCGCTGCGCGCGCTGCGGATGCTCGAGGTCTC
CTGCCGCGCGCTGACGCGTCTGCCGGACACCATCGGCGACCTGGCGGCGC
TGACGGCGCTCGCGCTGAACGCGTGCGGGCGTCTAGCGTCGCTGCCGGAG
TCTACCGGCGCCCTGCGGTCGCTCACGCAGCTCGATCTGACCAACTGCCG
CCAGCTGACGAGGCTGCCGGAGAGCACGGGCGACCTGGCGGCGCTGCGGA
GGCTCGAGCTGGCGGGCTGCGAGGGTCTGTCGAGCCTGCCGACGACGCTC
GTGCGGCTGCGCCAGCTCACGCAGTTGAGCGTTGCTAGATGTCAGGCGCC
CGTCGTAGCGTTTGCTGAAGCGCATGCTCAGCGGATTCGCCCTGGTGAGG
CACAGAGCTGTTGA

Coding sequence (CDS) from alignment at Contig_227:44797..47910+

>mRNA_17561 ID=mRNA_17561|Name=jgi.p|Trimin1|180741|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1632bp|location=Sequence derived from alignment at Contig_227:44797..47910+ (Tribonema minus UTEX_B_3156 )
TGCCTGCAGCTTACGGCACTGCCGGAGTGCGTCGGCGAGCTCTCGGCGCT
GACGTCGCTGGACCTGAGCAGCTGCGGCGGGCTCACGGCGCTGCCGGACT
CCATCGGCGGCCTGCGCGCGCTGACGGACCTGCGCTTGGGCGAAACACCG
CTCAGCAGCCGGCCGCGCAGCTTCGGCGGCCTCGCGTCGCTGACGTCGCT
ACGCCTGTCCGGCTGCGCGTCCCTCACCGCGCTGCCGGACAGCATTGGCG
CGCTGGCGGCACTCACCCACCTGAACATACACTACTGCGCCATTAGGCGC
CTCCCTGATGCCGCCGGTGCGCTGCGCGCGCTGCAGACGCTCGAGGTCAC
CTGCCACACGCTGGCGCGTCTACCGGACACCATCGGCGACCTGGCAGCGC
TGACGGCGCTCGCGCTGAACTCGTGCTGGCGTCTCGCGTACCTGCCGGAG
TCCATTGGCGCCCTGCGGTCGCTCACACAGCTCGATCTGACCGACTGCCG
CCAGCTGACGAGGCTGCCAGAGGGCACGGGCGACCTGGCGGCGCTGCGCA
GGCTCGAGTTGGCGGGCTGCGAGCTGACGCACTTGCCCGATGACATCGGC
GACCTGGCTGCACTGACCACACTCAGCCTACGCAACTGCACAGCCCTCAA
GACGCTGCCGGAAAGCATCGGCAGTCTCATCGCGCTGACGCAACTGGACC
TGACCGGCTGCCGTCAGCTGAGAGCCTTGCCTGACAGCATCGGCAATCTC
CGCGCATTGACAATGCTGGACCTGAGCAGCTGCTACTACGCGCTGCGGGA
CAGCATCGGTGACCTGACCGCGTTGAAATCGCTGAGCCTCTGCTGTGGCG
CTCGACCCCAGCTGCCGGACAGCATCTGCGATCTGGCCGCGTTGACAGCG
CTTAAACTGAGCAGCTGTGCGCAGCTCACGGCGCTGCCGGACCGCGTCGG
CGAGCTCTCGGCGCTGACGTCGCTGGACCTGAGCAGCTGCTTCAAGCTCG
CGGCGCTGCCGGATTCCATCGGCGGCCTGCGCGCGCTGACGGACCTTCGC
TTGAGCGAAGCATCATCGCTCAGCAGCCTGCCGGGCAGCATCGGCGGCCT
CGCCGCGCTGGCGTCGCTCCGCCTGTCCGGCTGCCTGTCTCTCACCGCGC
TGCCGGAGAGCATGGGCGCGCTAGCAGCGCTCACTTACCTAGGCATACAC
GGGTGCGCTGTCGCGCACCTCCCCGACGCGACCGGCGCGCTGCGCGCGCT
GCGGATGCTCGAGGTCTCCTGCCGCGCGCTGACGCGTCTGCCGGACACCA
TCGGCGACCTGGCGGCGCTGACGGCGCTCGCGCTGAACGCGTGCGGGCGT
CTAGCGTCGCTGCCGGAGTCTACCGGCGCCCTGCGGTCGCTCACGCAGCT
CGATCTGACCAACTGCCGCCAGCTGACGAGGCTGCCGGAGAGCACGGGCG
ACCTGGCGGCGCTGCGGAGGCTCGAGCTGGCGGGCTGCGAGGGTCTGTCG
AGCCTGCCGACGACGCTCGTGCGGCTGCGCCAGCTCACGCAGTTGAGCGT
TGCTAGATGTCAGGCGCCCGTCGTAGCGTTTGCTGAAGCGCATGCTCAGC
GGATTCGCCCTGGTGAGGCACAGAGCTGTTGA