mRNA_17558 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|180753
Unique NamemRNA_17558
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|180753 vs. uniprot
Match: A0A835Z4X9_9STRA (Delta subunit of GMP phosphodiesterase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4X9_9STRA)

HSP 1 Score: 264 bits (674), Expect = 2.500e-89
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 1 
Query:    1 MDMRDAETGKLLWESGKWGQRMLREEMQARVPKEILECRAVSRELNFTSQEEIRQFRLEQRIFLRGACLEEWFFDFGFVIPGSTNSWQQTIEAAAPEDMRHPAELSGKVTIETSFYDGKTLIAKTLVRVFYV 396
            MDMRDAETGKLLWESGKWGQRMLREEMQARVPKEILECRAVSRELNFTSQEEIRQFRLEQRIFLRGACLEEWFFDFGFVIPGSTNSWQQTIEAAAPEDMRHPAELSGKVTIETSFYDGKTLIAKTLVRVFYV
Sbjct:    1 MDMRDAETGKLLWESGKWGQRMLREEMQARVPKEILECRAVSRELNFTSQEEIRQFRLEQRIFLRGACLEEWFFDFGFVIPGSTNSWQQTIEAAAPEDMRHPAELSGKVTIETSFYDGKTLIAKTLVRVFYV 132
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BLAST of jgi.p|Trimin1|180753 vs. uniprot
Match: D7FJM2_ECTSI (GMP_PDE_delta domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJM2_ECTSI)

HSP 1 Score: 197 bits (500), Expect = 8.460e-63
Identity = 93/131 (70.99%), Postives = 113/131 (86.26%), Query Frame = 1 
Query:    1 MDMRDAETGKLLWESGKWGQRMLREEMQARVPKEILECRAVSRELNFTSQEEIRQFRLEQRIFLRGACLEEWFFDFGFVIPGSTNSWQQTIEAAAPEDMRHPAELSGKVTIETSFYDGKTLIAKTLVRVFY 393
            MDMRDA+T +LLWESG+WG+ M   E++A VP+ ILEC AVSRE+NFTSQEEIRQFRLEQR+FL GAC+EEWFFDFGFVIPGSTNSWQQTIE+A  + M    +LSG++TIET+F DG+T++ KTLVR+FY
Sbjct:    1 MDMRDADTARLLWESGEWGKDMYHHELKATVPRRILECSAVSREINFTSQEEIRQFRLEQRVFLAGACIEEWFFDFGFVIPGSTNSWQQTIESAGEDRMLAAEDLSGRMTIETTFLDGRTMLFKTLVRIFY 131
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BLAST of jgi.p|Trimin1|180753 vs. uniprot
Match: A0A6A3LLC5_9STRA (GMP_PDE_delta domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3LLC5_9STRA)

HSP 1 Score: 180 bits (456), Expect = 6.020e-55
Identity = 83/132 (62.88%), Postives = 112/132 (84.85%), Query Frame = 1 
Query:    1 MDMRDAETGKLLWESGKWGQRMLREEMQARVPKEILECRAVSRELNFTSQEEIRQFRLEQRIFLRGACLEEWFFDFGFVIPGSTNSWQQTIEAAAPEDMRHPAELSGKVTIETSFYDGKTLIAKTLVRVFYV 396
            M+MR A+TG+L+W+S +WG+ + R E +AR+P +IL+C AVSRE+NF+S EEI QFRLEQR+FL G+C+EEW F+FG+VIPGSTN+WQQTIE+A PE+M  P  +SGK+TIET+FYDG+  IAKT+ R++YV
Sbjct:   85 MNMRCADTGRLMWQSDEWGEDIYRVEQKARLPMDILKCSAVSREINFSSAEEISQFRLEQRVFLDGSCIEEWLFNFGYVIPGSTNTWQQTIESAGPENMLDPEMMSGKLTIETAFYDGQLPIAKTVYRIYYV 216
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BLAST of jgi.p|Trimin1|180753 vs. uniprot
Match: G4Z211_PHYSP (GMP_PDE_delta domain-containing protein n=14 Tax=Phytophthora TaxID=4783 RepID=G4Z211_PHYSP)

HSP 1 Score: 179 bits (453), Expect = 1.770e-54
Identity = 83/132 (62.88%), Postives = 111/132 (84.09%), Query Frame = 1 
Query:    1 MDMRDAETGKLLWESGKWGQRMLREEMQARVPKEILECRAVSRELNFTSQEEIRQFRLEQRIFLRGACLEEWFFDFGFVIPGSTNSWQQTIEAAAPEDMRHPAELSGKVTIETSFYDGKTLIAKTLVRVFYV 396
            M+MR A+TG+L+W+S +WG  + R E +AR+P +IL+C AVSRE+NF+S EEI QFRLEQR+FL G+C+EEW F+FG+VIPGSTN+WQQTIE+A PE+M  P  +SGK+TIET+FYDG+  IAKT+ R++YV
Sbjct:   86 MNMRCADTGRLMWQSDEWGDDIYRVEQKARLPVDILKCSAVSREINFSSAEEISQFRLEQRVFLDGSCIEEWLFNFGYVIPGSTNTWQQTIESAGPENMLDPEMMSGKLTIETAFYDGQLPIAKTVYRIYYV 217
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BLAST of jgi.p|Trimin1|180753 vs. uniprot
Match: A0A5D6XY42_9STRA (GMP_PDE_delta domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XY42_9STRA)

HSP 1 Score: 177 bits (448), Expect = 1.370e-53
Identity = 81/132 (61.36%), Postives = 108/132 (81.82%), Query Frame = 1 
Query:    1 MDMRDAETGKLLWESGKWGQRMLREEMQARVPKEILECRAVSRELNFTSQEEIRQFRLEQRIFLRGACLEEWFFDFGFVIPGSTNSWQQTIEAAAPEDMRHPAELSGKVTIETSFYDGKTLIAKTLVRVFYV 396
            M+MR  +TGKL+W+S +WG  +   E +AR+P  IL+C AVSRE+NF+S EEI QFRLEQR+FL G+C+EEW F+FG+VIPGSTN+WQQTIE+A  E+M  P  +SGK+TIET+FY+G++ IAKT+ R+FYV
Sbjct:   96 MNMRCGDTGKLMWQSDEWGDDVYTAEQEARIPASILKCSAVSREINFSSAEEITQFRLEQRVFLAGSCIEEWLFEFGYVIPGSTNTWQQTIESAGAENMLDPESISGKLTIETAFYEGQSAIAKTVYRIFYV 227
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BLAST of jgi.p|Trimin1|180753 vs. uniprot
Match: A0A8K1C6Q4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C6Q4_PYTOL)

HSP 1 Score: 174 bits (441), Expect = 1.320e-52
Identity = 82/132 (62.12%), Postives = 105/132 (79.55%), Query Frame = 1 
Query:    1 MDMRDAETGKLLWESGKWGQRMLREEMQARVPKEILECRAVSRELNFTSQEEIRQFRLEQRIFLRGACLEEWFFDFGFVIPGSTNSWQQTIEAAAPEDMRHPAELSGKVTIETSFYDGKTLIAKTLVRVFYV 396
            M+MR A+TGKL+W+S +W   +   E +A +P  IL+C AVSRE+NF+S EEI QFRLEQR+F +G+C+EEW F FGFVIPGSTNSWQQTIE+A P++M  P  +SGK+TIET FYDG+  IAKT+ R+FYV
Sbjct:   90 MNMRCADTGKLMWQSKEWRDDVFTVEQEAHIPSSILKCSAVSREVNFSSTEEITQFRLEQRVFFQGSCIEEWLFTFGFVIPGSTNSWQQTIESAGPDNMLDPEVMSGKLTIETGFYDGQMPIAKTVYRIFYV 221
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BLAST of jgi.p|Trimin1|180753 vs. uniprot
Match: A0A0P1B3K5_PLAHL (Retinal rod rhodopsin-sensitive cgmp 3-cyclic phosphodiesterase subunit delta n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B3K5_PLAHL)

HSP 1 Score: 173 bits (438), Expect = 3.330e-52
Identity = 79/132 (59.85%), Postives = 108/132 (81.82%), Query Frame = 1 
Query:    1 MDMRDAETGKLLWESGKWGQRMLREEMQARVPKEILECRAVSRELNFTSQEEIRQFRLEQRIFLRGACLEEWFFDFGFVIPGSTNSWQQTIEAAAPEDMRHPAELSGKVTIETSFYDGKTLIAKTLVRVFYV 396
            M+MR AETG+L+W+S +WG  +   E +A +PK+IL+C A+SRE+NF+S EEI +FRLEQR+FL G+C+EEW F FG+VIPGSTN+WQQTIE+  PE+M  P  ++GK+TIET+FYDG+  IAKT+ R++YV
Sbjct:   86 MNMRCAETGRLMWQSDEWGTDVYHVEQKAHLPKDILKCSAISREINFSSAEEISKFRLEQRVFLAGSCIEEWIFSFGYVIPGSTNTWQQTIESDEPENMLDPEAMNGKLTIETAFYDGQLPIAKTVYRIYYV 217
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BLAST of jgi.p|Trimin1|180753 vs. uniprot
Match: A0A7S2FRT7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FRT7_9STRA)

HSP 1 Score: 168 bits (426), Expect = 3.250e-51
Identity = 80/131 (61.07%), Postives = 104/131 (79.39%), Query Frame = 1 
Query:    1 MDMRDAETGKLLWESGKWGQRMLREEMQARVPKEILECRAVSRELNFTSQEEIRQFRLEQRIFLRGACLEEWFFDFGFVIPGSTNSWQQTIEAAAPEDMRHPAELSGKVTIETSFYDGKTLIAKTLVRVFY 393
            M+MR+A+ G++LWESG WG+ M  +EM A VP+ IL C+AVSRE+NFTS  E++ FRL Q++F +G  +EEW FDFGFVIPGSTNSWQQ I+AA  ++M  P  LSG +TIETSF+DG + IAK+LVR+FY
Sbjct:   26 MNMRNAQNGRVLWESGTWGREMFEQEMDAHVPRSILACKAVSREINFTSMSEMKAFRLVQKVFFQGMVMEEWRFDFGFVIPGSTNSWQQVIKAA--DEMMDPELLSGNITIETSFFDGASFIAKSLVRIFY 154
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BLAST of jgi.p|Trimin1|180753 vs. uniprot
Match: A0A3R7ILZ0_9STRA (GMP_PDE_delta domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7ILZ0_9STRA)

HSP 1 Score: 169 bits (427), Expect = 3.230e-50
Identity = 86/155 (55.48%), Postives = 112/155 (72.26%), Query Frame = 1 
Query:    1 MDMRDAETGKLLWESGKWGQRMLREEMQ-----------------------ARVPKEILECRAVSRELNFTSQEEIRQFRLEQRIFLRGACLEEWFFDFGFVIPGSTNSWQQTIEAAAPEDMRHPAELSGKVTIETSFYDGKTLIAKTLVRVFYV 396
            M+MR AETG+LLW+S +WG+ + R E +                       AR+P +IL+C AVSRE+NF+S EEI QFRLEQR+FL G+C+EEW F+FGFVIPGSTN+WQQTIE+A PE+M  P  +SGK+TIET+FYDG+  IAKT+ R++YV
Sbjct:   88 MNMRCAETGRLLWQSDEWGEDIYRVEQKGRNAAGLAVFSTVTEPLLSMKFAARLPVDILKCPAVSREINFSSAEEIPQFRLEQRVFLGGSCIEEWLFNFGFVIPGSTNTWQQTIESAGPENMLDPEVMSGKLTIETAFYDGQLPIAKTVYRIYYV 242
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BLAST of jgi.p|Trimin1|180753 vs. uniprot
Match: A0A2R5GDW4_9STRA (Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GDW4_9STRA)

HSP 1 Score: 167 bits (423), Expect = 7.690e-50
Identity = 77/131 (58.78%), Postives = 102/131 (77.86%), Query Frame = 1 
Query:    1 MDMRDAETGKLLWESGKWGQRMLREEMQARVPKEILECRAVSRELNFTSQEEIRQFRLEQRIFLRGACLEEWFFDFGFVIPGSTNSWQQTIEAAAPEDMRHPAELSGKVTIETSFYDGKTLIAKTLVRVFY 393
            M MRDAE+G+L+W S +WG  M   EM+A VP  IL+CRAV+RE+NFTS+E + +FRLEQR++ +G C+EEWFF+FGFVIPGSTN+W+QTI AA    M     +SG++TIETSFYD    ++K+LVR+FY
Sbjct:   85 MRMRDAESGRLMWRSEEWGDDMFEREMEAHVPASILDCRAVAREINFTSEEAMNKFRLEQRVYFQGVCMEEWFFNFGFVIPGSTNTWEQTIYAAEKSAMLPAHLISGQITIETSFYDDNLFVSKSLVRIFY 215
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|180753 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z4X9_9STRA2.500e-89100.00Delta subunit of GMP phosphodiesterase n=1 Tax=Tri... [more]
D7FJM2_ECTSI8.460e-6370.99GMP_PDE_delta domain-containing protein n=1 Tax=Ec... [more]
A0A6A3LLC5_9STRA6.020e-5562.88GMP_PDE_delta domain-containing protein n=3 Tax=Ph... [more]
G4Z211_PHYSP1.770e-5462.88GMP_PDE_delta domain-containing protein n=14 Tax=P... [more]
A0A5D6XY42_9STRA1.370e-5361.36GMP_PDE_delta domain-containing protein n=1 Tax=Py... [more]
A0A8K1C6Q4_PYTOL1.320e-5262.12Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A0P1B3K5_PLAHL3.330e-5259.85Retinal rod rhodopsin-sensitive cgmp 3-cyclic phos... [more]
A0A7S2FRT7_9STRA3.250e-5161.07Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A3R7ILZ0_9STRA3.230e-5055.48GMP_PDE_delta domain-containing protein n=3 Tax=Ph... [more]
A0A2R5GDW4_9STRA7.690e-5058.78Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_227contigContig_227:26743..27812 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|180753|e_gw1.227.41.1
BRITEko00000,ko00001,ko04131
KEGG rclassRC00296
KEGG ReactionR01234
KEGG Pathwayko00230,map00230
KEGG koko:K13758
Description3',5'-cyclic-nucleotide phosphodiesterase activity
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG4038@1|root,KOG4038@2759|Eukaryota
Evalue1.39e-63
Seed ortholog2880.D7FJM2
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGMP phosphodiesterase, delta subunit
Ec32 orthologEc-09_000330.1
TranscriptId181075
TrackFilteredModels1
ProteinId180753
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|180753gene_17558Tribonema minus UTEX_B_3156 geneContig_227 26743..27812 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|180753Trimin1|180753|e_gw1.227.41.1Tribonema minus UTEX_B_3156 polypeptideContig_227 26743..27812 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17558_2exon_17558_2Tribonema minus UTEX_B_3156 exonContig_227 26743..26930 -
exon_17558_1exon_17558_1Tribonema minus UTEX_B_3156 exonContig_227 27602..27812 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17558CDS_17558Tribonema minus UTEX_B_3156 CDSContig_227 27602..27812 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17558 ID=mRNA_17558|Name=jgi.p|Trimin1|180753|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=399bp|location=Sequence derived from alignment at Contig_227:26743..27812- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGACATGCGCGACGCGGAGACGGGCAAGCTCCTCTGGGAGAGCGGCAA
GTGGGGGCAGCGCATGCTGCGCGAGGAGATGCAGGCGCGCGTGCCCAAGG
AGATACTGGAGTGCCGCGCCGTGAGCCGCGAGCTCAACTTCACGAGCCAG
GAGGAGATACGGCAGTTCCGCCTCGAGCAGAGGATCTTCCTGCGCGGCGC
GTGCCTAGAAGAGTGGTTCTTCGACTTTGGCTTTGTCATACCCGGCTCCA
CCAACAGCTGGCAGCAGACGATAGAGGCGGCGGCGCCGGAGGACATGCGG
CACCCCGCAGAGCTCTCCGGCAAGGTCACCATAGAGACGTCCTTCTACGA
CGGCAAGACGCTCATCGCCAAGACGCTGGTGCGAGTGTTCTACGTATAG
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protein sequence of jgi.p|Trimin1|180753

>Trimin1|180753|e_gw1.227.41.1 ID=Trimin1|180753|e_gw1.227.41.1|Name=jgi.p|Trimin1|180753|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=133bp
MDMRDAETGKLLWESGKWGQRMLREEMQARVPKEILECRAVSRELNFTSQ
EEIRQFRLEQRIFLRGACLEEWFFDFGFVIPGSTNSWQQTIEAAAPEDMR
HPAELSGKVTIETSFYDGKTLIAKTLVRVFYV*
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mRNA from alignment at Contig_227:26743..27812-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17558 ID=mRNA_17558|Name=jgi.p|Trimin1|180753|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1070bp|location=Sequence derived from alignment at Contig_227:26743..27812- (Tribonema minus UTEX_B_3156 )
ATGGACATGCGCGACGCGGAGACGGGCAAGCTCCTCTGGGAGAGCGGCAA
GTGGGGGCAGCGCATGCTGCGCGAGGAGATGCAGGCGCGCGTGCCCAAGG
AGATACTGGAGTGCCGCGCCGTGAGCCGCGAGCTCAACTTCACGAGCCAG
GAGGAGATACGGCAGTTCCGCCTCGAGCAGAGGATCTTCCTGCGCGGCGC
GTGCCTAGAAGGTGGGTGGGGGGCGCAAAGTTGAGGTTGTGAGGGTTGGG
GGTTGAAGTTCAGCGGGTCACATGCCAGGGGGGCGTCGGATATGGGGGGG
TAGCGGGGGGCTGGTATCGTGATGCCAAAGTATGCCCAGCATTTGCTGCT
TACCCCTGCTGCTGCTGCTACAGCAGGAGCGATCTGTATCGTGCTGGGGG
GCGCGCAGAACAGTCATGATCGTATCAAGGTCCTTGTCGGAGCCAGGGTT
GTGTCGAGCACGCGCCAAGCCAAAATGCTGTCACACCGCTGACCTCTTTT
TGACTACTTCAAAAAAAGTTGAGCAGTCAAGTGCACACTGTTCTCGGTCT
GTTGAGCAACCACGGCAGCGCGTGCAGTGCGAGGGCGGTCGCACACCTGC
TGCCACTCCCCCCGCAAAATGCTTCCCGCACATTACTGTTGTGATGCGTC
GAGTCACACGCGAGACGAGGCGTGGGACGTGCGCGATGGACATGCCACCG
CAGTGCTCCGCTTGCGCACTCGCACGCGGTACAATGCCCGAGATCACCAG
TGGGTACCTAGTAGGCATGTTGAGGCTTTATGCAACGATTGCGATACCCG
TGCTACTCTGGCCTTGAACGGCGTTGCGCGCAAACGCAGTGAAACAACTT
CCTCCCCCCCCTTCCCCCCCCCTGGCACGCAGAGTGGTTCTTCGACTTTG
GCTTTGTCATACCCGGCTCCACCAACAGCTGGCAGCAGACGATAGAGGCG
GCGGCGCCGGAGGACATGCGGCACCCCGCAGAGCTCTCCGGCAAGGTCAC
CATAGAGACGTCCTTCTACGACGGCAAGACGCTCATCGCCAAGACGCTGG
TGCGAGTGTTCTACGTATAG
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Coding sequence (CDS) from alignment at Contig_227:26743..27812-

>mRNA_17558 ID=mRNA_17558|Name=jgi.p|Trimin1|180753|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=399bp|location=Sequence derived from alignment at Contig_227:26743..27812- (Tribonema minus UTEX_B_3156 )
ATGGACATGCGCGACGCGGAGACGGGCAAGCTCCTCTGGGAGAGCGGCAA
GTGGGGGCAGCGCATGCTGCGCGAGGAGATGCAGGCGCGCGTGCCCAAGG
AGATACTGGAGTGCCGCGCCGTGAGCCGCGAGCTCAACTTCACGAGCCAG
GAGGAGATACGGCAGTTCCGCCTCGAGCAGAGGATCTTCCTGCGCGGCGC
GTGCCTAGAAGAGTGGTTCTTCGACTTTGGCTTTGTCATACCCGGCTCCA
CCAACAGCTGGCAGCAGACGATAGAGGCGGCGGCGCCGGAGGACATGCGG
CACCCCGCAGAGCTCTCCGGCAAGGTCACCATAGAGACGTCCTTCTACGA
CGGCAAGACGCTCATCGCCAAGACGCTGGTGCGAGTGTTCTACGTATAG
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