mRNA_17493 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|354469
Unique NamemRNA_17493
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|354469 vs. uniprot
Match: A0A835Z255_9STRA (Arf-GAP domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z255_9STRA)

HSP 1 Score: 179 bits (453), Expect = 1.090e-50
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 3 
Query:    3 DIGSKGISFITSSLSSLTTGVQNLAHEPIGQKLSFGVSSIGTRLADPALKTNVQEGAGVVLSKAAETASWGWSALSTGATTLWSTAAKALAEEGGGSA 296
            DIGSKGISFITSSLSSLTTGVQNLAHEPIGQKLSFGVSSIGTRLADPALKTNVQEGAGVVLSKAAETASWGWSALSTGATTLWSTAAKALAEEGGGSA
Sbjct:  230 DIGSKGISFITSSLSSLTTGVQNLAHEPIGQKLSFGVSSIGTRLADPALKTNVQEGAGVVLSKAAETASWGWSALSTGATTLWSTAAKALAEEGGGSA 327
[Close]
BLAST of jgi.p|Trimin1|354469 vs. uniprot
Match: A0A836CGD3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGD3_9STRA)

HSP 1 Score: 165 bits (418), Expect = 7.170e-48
Identity = 124/137 (90.51%), Postives = 124/137 (90.51%), Query Frame = 3 
Query:  354 MPGFGGGDGGGEWVSAXXXXXXXXXXXXXXXXXXXXXXXXXXYGGGIEDLLSDSRGDGXXXXXXXXAAAPRGMRLSPSSGLPPTSAHARAGGAGAADHGQRAGAAQGAQRRLFRKFWAGQIMYFWRRWEGRTCIGGC 764
            MPGFGGGDGGGEWVSA XXXXXXXXXXXXXXXXXXXXXXXXX     EDLLS      XXXXXXXX AAPRGMRLSPSSGLPPTSAHARAGGAGAADHGQRAGAAQGAQRRLFRKFWAGQIMYFWRRWEGRTCIGGC
Sbjct:    1 MPGFGGGDGGGEWVSAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDLLSXXXXXXXXXXXXXXXAAPRGMRLSPSSGLPPTSAHARAGGAGAADHGQRAGAAQGAQRRLFRKFWAGQIMYFWRRWEGRTCIGGC 137
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354469 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835Z255_9STRA1.090e-50100.00Arf-GAP domain-containing protein (Fragment) n=1 T... [more]
A0A836CGD3_9STRA7.170e-4890.51Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_253contigContig_253:41604..44044 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|354469|estExt_Genemark1.C_Ctg_2530008
Hectar predicted targeting categoryother localisation
TranscriptId354791
TrackFilteredModels1
ProteinId354469
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354469gene_17493Tribonema minus UTEX_B_3156 geneContig_253 41604..44044 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354469Trimin1|354469|estExt_Genemark1.C_Ctg_2530008Tribonema minus UTEX_B_3156 polypeptideContig_253 43478..43935 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17493_1exon_17493_1Tribonema minus UTEX_B_3156 exonContig_253 41604..41671 +
exon_17493_2exon_17493_2Tribonema minus UTEX_B_3156 exonContig_253 43193..43748 +
exon_17493_3exon_17493_3Tribonema minus UTEX_B_3156 exonContig_253 43793..44044 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_17493UTR5_17493Tribonema minus UTEX_B_3156 five_prime_UTRContig_253 41604..41671 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17493CDS_17493Tribonema minus UTEX_B_3156 CDSContig_253 43478..43748 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_17493UTR3_17493Tribonema minus UTEX_B_3156 three_prime_UTRContig_253 43936..44044 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17493 ID=mRNA_17493|Name=jgi.p|Trimin1|354469|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=876bp|location=Sequence derived from alignment at Contig_253:41604..44044+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTGACATTGGCAGCAAGGGCATCAGCTTCATCACGTCGTCGCTGTCGTCG
CTGACGACGGGCGTGCAGAACCTCGCGCACGAGCCCATCGGGCAGAAGCT
GAGCTTCGGCGTGAGCTCCATCGGCACGCGCCTCGCGGACCCCGCTCTCA
AGACCAACGTCCAGGAGGGCGCGGGCGTCGTCCTCTCCAAGGCCGCAGAA
ACAGCGTCCTGGGGCTGGTCCGCGCTGTCCACGGGCGCCACCACGCTCTG
GTCCACCGCCGCCAAGGCGCTGGCAGAGGAAGGCGGCGGCAGCGCGCCGG
TGCCGCTGTACCGCGCGGACGCGCTCGGCGGCGCGGCGCCGCCGCGCAGC
GCCATGCCGGGCTTCGGCGGCGGCGATGGCGGCGGCGAGTGGGTGAGCGC
GGGCGCGTCACCGCCGCGCGCCGTCAGCGGCGGCGGCGGCGGCGGCGCCG
GCGGCAGCGCGTACGGCGGCAGCGGCGCCTACGGCGGCGGCATCGAGGAC
CTGCTGTCAGATTCGCGCGGCGACGGCGGCGCTGCTGCCGGCGCTGCGTC
TGCGGCGGCGCCGCGCGGCATGCGGCTGTCGCCGTCGAGCGGGCTGCCGC
CGACGAGCGCGCACGCGCGGGCCGGCGGCGCCGGCGCCGCAGACCATGGG
CAGCGCGCAGGTGCCGCGCAAGGAGCTCAACGACGACTTTTTCGGAAGTT
TTGGGCTGGACAAATAATGTATTTTTGGAGGCGGTGGGAGGGGCGTACGT
GCATAGGCGGCTGTTGAGTTCAGAGGGGAAACGGTGGTTGGCAGCATTTT
TTGGACTGCGCGACTGGCGTCAGTCGTGCCGCACCCTTTGGTGCGCACAA
TGGATGTGTGTGTATTTCTGCGGGAG
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protein sequence of jgi.p|Trimin1|354469

>Trimin1|354469|estExt_Genemark1.C_Ctg_2530008 ID=Trimin1|354469|estExt_Genemark1.C_Ctg_2530008|Name=jgi.p|Trimin1|354469|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=138bp
MPGFGGGDGGGEWVSAGASPPRAVSGGGGGGAGGSAYGGSGAYGGGIEDL
LSDSRGDGGAAAGAASAAAPRGMRLSPSSGLPPTSAHARAGGAGAADHGQ
RAGAAQGAQRRLFRKFWAGQIMYFWRRWEGRTCIGGC*
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mRNA from alignment at Contig_253:41604..44044+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17493 ID=mRNA_17493|Name=jgi.p|Trimin1|354469|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2441bp|location=Sequence derived from alignment at Contig_253:41604..44044+ (Tribonema minus UTEX_B_3156 )
GTGACATTGGCAGCAAGGGCATCAGCTTCATCACGTCGTCGCTGTCGTCG
CTGACGACGGGCGTGCAGGTGAGCACTGCTGCTGATGTTTGCTGAGAGAT
ACCGTAACAGTGTGTAACACTGTGTGTCATACTGAACAGTATTCGGCGTG
GTTGGAGTCCCAGCTGCAACTCTGGTGGATGTGCGGTGCGCGGTGAGCAA
ACAGCAGTGGGGTTTGGACAGAGCTCAAACCCGTTTAGTGACACTGCAAT
GCCAGCAAGTCAGGCCCAGAAGCATGCCTGCCACGAACTTCAAGTTGTGC
AAGGATGGAAGTTTCTCAGCCAGCCTCGTGACCTGTTCAACGAAACACAC
CCCATGACATGGCGTTCAGCAACAGGCAGTAGTGTGTTAGCACGAGTCCA
GACTTGTGCGGTGCTTGCAACAGCTCAACCATCACGCATCATGAAGGGCA
TTGAAACGCTGCCATCATGCCCGATGCTTGTGCCAGACACGGCTGCTTCT
GCATATGGCGGCCCTAAACAGAAGAACAGAGTCAATGTGCAGTCAGTCTG
AATTTGTTTGGCCCCGCTAAGGCACGCAATGTTTCGCGGTGCTGGCAACC
ACTTCATGGTATCCCTTGTGCACAAAGTTGTCCCACAGAGCATGCTGCCA
ACAGCTTTGCGGGCAGGCGCGTTGGAGTGATCCATCAGAAGTTTTCAGCT
GTAAGCTGTGCTTGAGATTTGCTGTGTTTAGCCTTGTTGGCAAGGTCGCG
TGCACTGGTGCACCACGCCATCATGATGATACGTCATATGATACTTATAC
ATGGCAACATGCTGCGCGTAGGGTGTATTAAATTTTGTGGGGCATGTGGT
GAGGTAAGCTTTGGTGGCTCAGTCAGGGCTTGCCGGCAAGCCGACGTGCG
CAGGTGGCTCAGCTTGCGTCGTGCCACCTTGCAGTGCTGTTGTAGACGAT
CCAATGCGCTGGTGCGCCAGCACCTCAGTACAGCTCGGATTGGCAAGTCA
GCTCCGCTTAGTGCAGCGGGCCGCACGTGCTTCTCAAGATGGAACGTATC
GGCTGCATGGCGTGCCGGTCAGCTGATGGGGGCTGTCGATGTTGCTCCTG
TCAGTCCCCCCCTCCATTGATAAGAAGTGCTCACAGTTTGCCCATACTGT
TGGCCTCCTGCCATGCGTGTACTGGCCCGCCCACGCGCGTAACACAGGGG
GGCGGGGGGGGGGGGGGGGGGGGGGGGAGCACCGCACGCGCTACTCATGA
TATGCAGCTGAGCACTGGTGTGCAGATGCGGTGCCCTATGTGTCACCATC
CACGATGTGCGATCCGCCCATGACACAACATGCCCTCGCTGCGTGCCAGA
ATGCTTTCAGTCTAGCACACTTTCTCAGAGTGCGCAATGTCGCCGCCAAC
GTCCCCCATGGCACTGCCAACGCCACCGACGCCGCGACCCTTGGCAGGCT
CGCCATCAGACCACGATGCGCCAGCCCTGCGCCCAGAACCTCTGCGCCTT
GCTGCTCACCCCGCTCACCCCCGTTCATGACTCAAACAAGCCACAATCGC
TCATCACCCCCTGCCCCCCCCTACCCCCCCCCCCCCCAGAACCTCGCGCA
CGAGCCCATCGGGCAGAAGCTGAGCTTCGGCGTGAGCTCCATCGGCACGC
GCCTCGCGGACCCCGCTCTCAAGACCAACGTCCAGGAGGGCGCGGGCGTC
GTCCTCTCCAAGGCCGCAGAAACAGCGTCCTGGGGCTGGTCCGCGCTGTC
CACGGGCGCCACCACGCTCTGGTCCACCGCCGCCAAGGCGCTGGCAGAGG
AAGGCGGCGGCAGCGCGCCGGTGCCGCTGTACCGCGCGGACGCGCTCGGC
GGCGCGGCGCCGCCGCGCAGCGCCATGCCGGGCTTCGGCGGCGGCGATGG
CGGCGGCGAGTGGGTGAGCGCGGGCGCGTCACCGCCGCGCGCCGTCAGCG
GCGGCGGCGGCGGCGGCGCCGGCGGCAGCGCGTACGGCGGCAGCGGCGCC
TACGGCGGCGGCATCGAGGACCTGCTGTCAGATTCGCGCGGCGACGGCGG
CGCTGCTGCCGGCGCTGCGTCTGCGGCGGCGCCGCGCGGCATGCGGCTGT
CGCCGTCGAGCGGGCTGCCGCCGACGAGCGCGCACGCGCGGGCCGGCAGC
GTGTCGCCGCCGCCGACGGCGCCGCTGCCGGCGGCGGCGGCGGCGCCGGC
GCCGCAGACCATGGGCAGCGCGCAGGTGCCGCGCAAGGAGCTCAACGACG
ACTTTTTCGGAAGTTTTGGGCTGGACAAATAATGTATTTTTGGAGGCGGT
GGGAGGGGCGTACGTGCATAGGCGGCTGTTGAGTTCAGAGGGGAAACGGT
GGTTGGCAGCATTTTTTGGACTGCGCGACTGGCGTCAGTCGTGCCGCACC
CTTTGGTGCGCACAATGGATGTGTGTGTATTTCTGCGGGAG
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Coding sequence (CDS) from alignment at Contig_253:41604..44044+

>mRNA_17493 ID=mRNA_17493|Name=jgi.p|Trimin1|354469|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=414bp|location=Sequence derived from alignment at Contig_253:41604..44044+ (Tribonema minus UTEX_B_3156 )
ATGCCGGGCTTCGGCGGCGGCGATGGCGGCGGCGAGTGGGTGAGCGCGGG
CGCGTCACCGCCGCGCGCCGTCAGCGGCGGCGGCGGCGGCGGCGCCGGCG
GCAGCGCGTACGGCGGCAGCGGCGCCTACGGCGGCGGCATCGAGGACCTG
CTGTCAGATTCGCGCGGCGACGGCGGCGCTGCTGCCGGCGCTGCGTCTGC
GGCGGCGCCGCGCGGCATGCGGCTGTCGCCGTCGAGCGGGCTGCCGCCGA
CGAGCGCGCACGCGCGGGCCGGCGGCGCCGGCGCCGCAGACCATGGGCAG
CGCGCAGGTGCCGCGCAAGGAGCTCAACGACGACTTTTTCGGAAGTTTTG
GGCTGGACAAATAATGTATTTTTGGAGGCGGTGGGAGGGGCGTACGTGCA
TAGGCGGCTGTTGA
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