mRNA_17476 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|179449 vs. uniprot
Match: A0A835Z349_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z349_9STRA) HSP 1 Score: 392 bits (1006), Expect = 1.470e-137 Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 1 Query: 1 KLRMLNLQKNCISDIDNLPALPNLIFLDLYSSGIRDLADSARALARTPSLRVLMLGKNRLTALSIAALNTLVKLDTLDLHSNAIATVSGCCLSALGGLRVLNLAGNRLRRVEGLSGLRSLTELNLGRNFITTVSRELELPRLQRLFLSHNLIDSWDECAGLFSATVSASLVELSFNGNPIATQVQMLILLPYAVVYDLVESGTWI 615 KLRMLNLQKNCISDIDNLPALPNLIFLDLYSSGIRDLADSARALARTPSLRVLMLGKNRLTALSIAALNTLVKLDTLDLHSNAIATVSGCCLSALGGLRVLNLAGNRLRRVEGLSGLRSLTELNLGRNFITTVSRELELPRLQRLFLSHNLIDSWDECAGLFSATVSASLVELSFNGNPIATQVQMLILLPYAVVYDLVESGTWI Sbjct: 1 KLRMLNLQKNCISDIDNLPALPNLIFLDLYSSGIRDLADSARALARTPSLRVLMLGKNRLTALSIAALNTLVKLDTLDLHSNAIATVSGCCLSALGGLRVLNLAGNRLRRVEGLSGLRSLTELNLGRNFITTVSRELELPRLQRLFLSHNLIDSWDECAGLFSATVSASLVELSFNGNPIATQVQMLILLPYAVVYDLVESGTWI 205
BLAST of jgi.p|Trimin1|179449 vs. uniprot
Match: A0A6L5CIY9_9INSE (Uncharacterized protein n=1 Tax=Ephemera danica TaxID=1049336 RepID=A0A6L5CIY9_9INSE) HSP 1 Score: 108 bits (269), Expect = 1.570e-24 Identity = 78/197 (39.59%), Postives = 107/197 (54.31%), Query Frame = 1 Query: 4 LRMLNLQKNCISDIDNLPALPNLIFLDLYSSGIRDLADSARALARTPSLRVLMLGKNRLTALSIAALNTLVKLDTLDLHSNAIATVSGCCLSALGGLRVLNLAGNRLRRVEG--LSGLRSLTELNLGRNFITTVSRELELPRLQRLFLSHNLID-----------------SW-DECAGLFSATVSASLVELSFNGN 534 +R+L+LQ N I+ +D LPALP L+FLDLY + + L + P+LRVL++GKNR L++L+ LDLH N + T G L AL L+VLN+AGN+LR V L GL L ELNL RN + V ++ L++LFLS+N I W D L + + S L+ELS +GN Sbjct: 105 VRLLSLQHNAITRLDGLPALPRLVFLDLYDNQLERLV----GIGVLPNLRVLLIGKNR------PGFQDLLRLEVLDLHGNRL-TKLGRGLEALSELKVLNVAGNQLRGVSNHELQGLVRLQELNLRRNQLQQVDALSKVSSLKKLFLSNNNIQRFKPLIVQTIGDLVNQRQWFDSMVELMNTSSSCGLLELSIDGN 290
BLAST of jgi.p|Trimin1|179449 vs. uniprot
Match: A0A7S3NLU7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NLU7_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 4.390e-17 Identity = 69/179 (38.55%), Postives = 92/179 (51.40%), Query Frame = 1 Query: 4 LRMLNLQKNCISDIDNLPALPNLIFLDLYSSGIRDLADSARALARTPSLRVLMLGKNRLTALSIAALNTLVKLDTLDLHSNAIATVSGCCLSALGGLRV-LNLAGNRLRRVEGLSGLRSLTELNLGRNFITTVSRELELPRLQRLFLSHNLIDSWDECAGLFSATVSASLVELSFNGNP 537 L++LNLQ N I + L +PNLIFLD Y + ++ L L + LRV MLGKNRL ++ N + KL LD LNLA N+L ++ L SLTELNL RN I TV ++LP+LQRLFL+HN ++S + + +S ELS NP Sbjct: 43 LKLLNLQNNEIECLQYLDCVPNLIFLDFYHNKLQHL--DGTQLEKIAQLRVFMLGKNRLKSIG----NEIQKLQFLDXXXXXXXXXXXXXXXXXXXXXXXLNLAQNKLTEID-FKNLDSLTELNLRRNQIHTV--HIQLPKLQRLFLAHNCLNSLAQLRSFWHLPLS----ELSLQDNP 208
BLAST of jgi.p|Trimin1|179449 vs. uniprot
Match: A0A7S3XMA4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMA4_HETAK) HSP 1 Score: 82.0 bits (201), Expect = 1.410e-16 Identity = 50/88 (56.82%), Postives = 58/88 (65.91%), Query Frame = 1 Query: 280 ALGGLRVLNLAGNRLRRVEGLSGLRSLTELNLGRNFITTVSRELELPRLQRLFLSHNLIDSWDECAGLFSATVSASLVELSFNGNPIA 543 AL LRVLNLAGN +R V L GLR LTELNL RN + V LPRLQR+FLS+N + S+D LF S SL+ELS + NPIA Sbjct: 2 ALRDLRVLNLAGNAIRVVHNLGGLRGLTELNLRRNRVEHVFELHFLPRLQRVFLSNNQVRSFDHVQCLFK---SQSLLELSLDNNPIA 86
BLAST of jgi.p|Trimin1|179449 vs. uniprot
Match: G9K8S2_MUSPF (Leucine rich repeat containing 49 (Fragment) n=1 Tax=Mustela putorius furo TaxID=9669 RepID=G9K8S2_MUSPF) HSP 1 Score: 74.3 bits (181), Expect = 8.130e-14 Identity = 53/109 (48.62%), Postives = 65/109 (59.63%), Query Frame = 1 Query: 229 LDLHSNAIATVSGCCLSALGGLRVLNLAGNRLRRVEG--LSGLRSLTELNLGRNFITTVSRELELPRLQRLFLSHNLIDSWDECAGLFSATVSASLVELSFNGNPIATQ 549 LDLH N I + +S L LRVLNLA N L V+ LSGL SLTELNL N IT V LP LQRLFLS N I +++ L S+SL +++F+GN IA + Sbjct: 2 LDLHGNQITKIEN--VSHLCDLRVLNLARNLLSHVDNHNLSGLDSLTELNLRHNQITFVRDVDNLPCLQRLFLSFNNISTFESVCCLAD---SSSLSDITFDGNSIAQE 105
BLAST of jgi.p|Trimin1|179449 vs. uniprot
Match: A0A0S4ITQ7_BODSA (Leucine-rich repeat protein, putative n=1 Tax=Bodo saltans TaxID=75058 RepID=A0A0S4ITQ7_BODSA) HSP 1 Score: 76.6 bits (187), Expect = 1.030e-12 Identity = 68/217 (31.34%), Postives = 107/217 (49.31%), Query Frame = 1 Query: 4 LRMLNLQKNCISDIDNLPALP------------------NLIFLDLYSSGIRDLADSARALARTPSLRVLMLGKNRLTALSIAALN-TLVKLDTLDLHSNAIAT-------------VSGCCLSALGGLRVLNLAGNRLRRVEGLSGLRSLTELNLGRNFITTVSRELELPR----LQRLFLSHNL-IDSWDECAGLFSA-TVSASLVELSFNGNPI 540 +++LNLQ N D+++L A P ++++LDLY++ ++ L+ + + LRVLM+GKNRLT LS+ T L+ LD+H N + T S LRVLN+AGNRL + G+ L +L+E N RN IT + + PR L++ FLS+ L + W+E + T L E++ + NP+ Sbjct: 303 VKLLNLQNN---DLEHLTAPPLASSPPYAPAPTPLSCFGSVVYLDLYNNRLQSLSGAEQL----KKLRVLMVGKNRLTDLSLLHEQVTPTALEVLDVHGNCLTTFFLSLEESTASGGASPVATKVFPQLRVLNVAGNRLTNLCGMECLPALSEFNARRNRITDLPDSM--PRHALNLRKCFLSYQLGVAGWEEARHVVKTITACKHLEEVTLDANPL 510
BLAST of jgi.p|Trimin1|179449 vs. uniprot
Match: A0A3Q3X7P0_MOLML (Uncharacterized protein n=3 Tax=Mola mola TaxID=94237 RepID=A0A3Q3X7P0_MOLML) HSP 1 Score: 71.2 bits (173), Expect = 6.520e-11 Identity = 47/92 (51.09%), Postives = 57/92 (61.96%), Query Frame = 1 Query: 274 LSALGGLRVLNLAGNRLRRVEGLSGLRSLTELNLGRNFITTVSRELELPRLQRLFLSHNLIDSWDECAGLFSATVSASLVELSFNGNPIATQ 549 +S L L+VLNLAGN + RVE L GL LTE NL N I+ V LP LQRLFLS N I S+D+ A L SL E++ +GNPIA + Sbjct: 131 VSHLSQLKVLNLAGNSISRVENLQGLDCLTEHNLWHNCISVVIEVDLLPCLQRLFLSCNNIISFDQLACLGEL---CSLSEVTLDGNPIALE 219
BLAST of jgi.p|Trimin1|179449 vs. uniprot
Match: F0YKZ7_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YKZ7_AURAN) HSP 1 Score: 65.1 bits (157), Expect = 1.500e-9 Identity = 61/183 (33.33%), Postives = 78/183 (42.62%), Query Frame = 1 Query: 1 KLRMLNLQKNCISDIDNLPALPNLIFLDLYSSGIRDLADSARALARTPSLRVLMLGKNRLTALSIAALNTLVKLDTLDLHSNAIATVSGCCLSALGGLRVLNLAGNRLRRVEGLSGLRSLTELNLGRNFITTVSRELELPRLQRLFLSHNLIDSWDECAGLFSATVSASLVELSFNGNPIATQ 549 ++R+LN Q N I +I +L LPNLIFLDLY++ I L+ R L P+LRVLMLGKNR+ A+S L L KL LQR+FLS+N + S+D A LF L+ELS +GNPIA Q Sbjct: 1 RVRLLNYQNNYIEEIRHLSHLPNLIFLDLYNNCIESLS---RDLECVPTLRVLMLGKNRIKAIS--HLEKLGKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--XXXXXXXXXXXXXLQRVFLSNNRVQSFDAVACLFDVRF---LMELSMDGNPIALQ 173
BLAST of jgi.p|Trimin1|179449 vs. uniprot
Match: A0A8J2SSU8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SSU8_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 3.640e-9 Identity = 41/75 (54.67%), Postives = 53/75 (70.67%), Query Frame = 1 Query: 1 KLRMLNLQKNCISDIDNLPALPNLIFLDLYSSGIRDLADSARALARTPSLRVLMLGKNRLTALSIAALNTLVKLD 225 ++R+LN Q N I +I NL LPNLIFLDLY++ I +L+ L P+LRVLMLGKNR+ A+S L+ LVKLD Sbjct: 235 QVRLLNYQSNYIKEIQNLVHLPNLIFLDLYNNRIENLSHD---LGCVPTLRVLMLGKNRIRAIS--HLDKLVKLD 304
BLAST of jgi.p|Trimin1|179449 vs. uniprot
Match: A0A7S2F339_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F339_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 6.870e-9 Identity = 38/75 (50.67%), Postives = 53/75 (70.67%), Query Frame = 1 Query: 1 KLRMLNLQKNCISDIDNLPALPNLIFLDLYSSGIRDLADSARALARTPSLRVLMLGKNRLTALSIAALNTLVKLD 225 ++R+LN Q N I ID L LPNLIFLDLY++ I +++D L+ P+LRVLMLGKN++ +S L+ L+KLD Sbjct: 49 RVRLLNYQNNFIERIDALRNLPNLIFLDLYNNCIEEMSDE---LSFVPTLRVLMLGKNKIRMIS--NLDKLMKLD 118 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|179449 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_17476 ID=mRNA_17476|Name=jgi.p|Trimin1|179449|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=618bp|location=Sequence derived from alignment at Contig_194:202008..203878- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. AAGCTGCGGATGCTCAACCTGCAGAAGAACTGCATCAGCGACATTGACAAback to top protein sequence of jgi.p|Trimin1|179449 >Trimin1|179449|e_gw1.194.49.1 ID=Trimin1|179449|e_gw1.194.49.1|Name=jgi.p|Trimin1|179449|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=206bp KLRMLNLQKNCISDIDNLPALPNLIFLDLYSSGIRDLADSARALARTPSLback to top mRNA from alignment at Contig_194:202008..203878- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_17476 ID=mRNA_17476|Name=jgi.p|Trimin1|179449|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1871bp|location=Sequence derived from alignment at Contig_194:202008..203878- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_194:202008..203878- >mRNA_17476 ID=mRNA_17476|Name=jgi.p|Trimin1|179449|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=618bp|location=Sequence derived from alignment at Contig_194:202008..203878- (Tribonema minus UTEX_B_3156 )back to top |