mRNA_17452 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|128954
Unique NamemRNA_17452
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|128954 vs. uniprot
Match: A0A835Z544_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z544_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.360e-33
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1 
Query:    1 TQSKRAERWSSDEHRVFLKAMTQHGRDWKKIKAQLPTRTLTQVRTHAYWYLAKVER 168
            TQSKRAERWSSDEHRVFLKAMTQHGRDWKKIKAQLPTRTLTQVRTHAYWYLAKVER
Sbjct:    1 TQSKRAERWSSDEHRVFLKAMTQHGRDWKKIKAQLPTRTLTQVRTHAYWYLAKVER 56
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BLAST of jgi.p|Trimin1|128954 vs. uniprot
Match: A0A835Z6K2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6K2_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.250e-22
Identity = 39/53 (73.58%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:   10 KRAERWSSDEHRVFLKAMTQHGRDWKKIKAQLPTRTLTQVRTHAYWYLAKVER 168
            KR+ERWS +EH+ FL+AM +HGRDWK IK  LPTR+LTQVRTHAYWYL+K+ER
Sbjct:    1 KRSERWSDEEHQAFLQAMKEHGRDWKLIKRSLPTRSLTQVRTHAYWYLSKLER 53
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BLAST of jgi.p|Trimin1|128954 vs. uniprot
Match: A0A2D4BZS8_PYTIN (Uncharacterized protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BZS8_PYTIN)

HSP 1 Score: 67.8 bits (164), Expect = 5.820e-12
Identity = 30/54 (55.56%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:    7 SKRAERWSSDEHRVFLKAMTQHGRDWKKIKAQLPTRTLTQVRTHAYWYLAKVER 168
            SKR ERW+ DEH +F++ + ++GR WKKI+A + T+T  QVRTHAY Y AK+ R
Sbjct:  202 SKRRERWTEDEHALFMEGLNRYGRKWKKIQAFVKTKTAVQVRTHAYGYFAKLLR 255
[Close]
BLAST of jgi.p|Trimin1|128954 vs. uniprot
Match: A0A2D4CHR8_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CHR8_PYTIN)

HSP 1 Score: 67.8 bits (164), Expect = 7.220e-12
Identity = 30/54 (55.56%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:    7 SKRAERWSSDEHRVFLKAMTQHGRDWKKIKAQLPTRTLTQVRTHAYWYLAKVER 168
            SKR ERW+ DEH +F++ + ++GR WKKI+A + T+T  QVRTHAY Y AK+ R
Sbjct:  248 SKRRERWTEDEHALFMEGLNRYGRKWKKIQAFVKTKTAVQVRTHAYGYFAKLLR 301
[Close]
BLAST of jgi.p|Trimin1|128954 vs. uniprot
Match: A0A1V9Z3Y4_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z3Y4_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 3.520e-11
Identity = 27/49 (55.10%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:   22 RWSSDEHRVFLKAMTQHGRDWKKIKAQLPTRTLTQVRTHAYWYLAKVER 168
            RW++DE   F++ +  HG+DWKKI A +PTRTL Q+RTHA  Y  K+ER
Sbjct:   88 RWTTDEQEAFVEGLNTHGKDWKKIAAMIPTRTLMQIRTHAQKYFKKMER 136
[Close]
BLAST of jgi.p|Trimin1|128954 vs. uniprot
Match: A0A0C6WCU0_9POAL (ScMYB57 protein n=1 Tax=Saccharum hybrid cultivar Co 86032 TaxID=672234 RepID=A0A0C6WCU0_9POAL)

HSP 1 Score: 58.9 bits (141), Expect = 4.690e-10
Identity = 24/54 (44.44%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:    1 TQSKRAERWSSDEHRVFLKAMTQHGRDWKKIKAQLPTRTLTQVRTHAYWYLAKV 162
            T SK+ E+W+ DEH++FL+A+ QHGR W++I+  +  +T  Q+R+HA  + +KV
Sbjct:   30 TISKQREKWTEDEHKLFLEALQQHGRAWRRIQEHIGCKTAVQIRSHAQKFFSKV 83
[Close]
BLAST of jgi.p|Trimin1|128954 vs. uniprot
Match: F0W9K9_9STRA (Uncharacterized protein AlNc14C40G3464 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W9K9_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 9.120e-10
Identity = 26/50 (52.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:   19 ERWSSDEHRVFLKAMTQHGRDWKKIKAQLPTRTLTQVRTHAYWYLAKVER 168
            ERW+  EH +F+K +  +GR WKKI+  + T+T+ QVRTHAY Y AK+ R
Sbjct:   95 ERWTEREHALFMKGLLAYGRKWKKIQTLVQTKTVVQVRTHAYGYFAKLLR 144
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BLAST of jgi.p|Trimin1|128954 vs. uniprot
Match: B4FVU9_MAIZE (Protein REVEILLE 1 n=4 Tax=Zea mays TaxID=4577 RepID=B4FVU9_MAIZE)

HSP 1 Score: 61.2 bits (147), Expect = 1.500e-9
Identity = 26/56 (46.43%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:    1 TQSKRAERWSSDEHRVFLKAMTQHGRDWKKIKAQLPTRTLTQVRTHAYWYLAKVER 168
            T SK+ E+W+ DEHR+FL+A+ QHGR W++I+  + ++T  Q+R+HA  + +KV R
Sbjct:   53 TISKQREKWTEDEHRLFLEALRQHGRAWRRIQEHVGSKTAVQIRSHAQKFFSKVIR 108
[Close]
BLAST of jgi.p|Trimin1|128954 vs. uniprot
Match: A0A835BMQ2_9POAL (Uncharacterized protein n=2 Tax=Digitaria exilis TaxID=1010633 RepID=A0A835BMQ2_9POAL)

HSP 1 Score: 60.5 bits (145), Expect = 2.770e-9
Identity = 25/56 (44.64%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:    1 TQSKRAERWSSDEHRVFLKAMTQHGRDWKKIKAQLPTRTLTQVRTHAYWYLAKVER 168
            T SK+ E+W+ DEH++FL+A+ QHGR W++I+  + ++T  Q+R+HA  + +KV R
Sbjct:   29 TISKQREKWTEDEHKLFLEALQQHGRAWRRIQEHIGSKTAVQIRSHAQKFFSKVIR 84
[Close]
BLAST of jgi.p|Trimin1|128954 vs. uniprot
Match: A0A3L6FPD6_MAIZE (Protein REVEILLE 1 n=5 Tax=Zea mays TaxID=4577 RepID=A0A3L6FPD6_MAIZE)

HSP 1 Score: 60.5 bits (145), Expect = 2.810e-9
Identity = 25/56 (44.64%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:    1 TQSKRAERWSSDEHRVFLKAMTQHGRDWKKIKAQLPTRTLTQVRTHAYWYLAKVER 168
            T SK+ E+W+ DEH++FL+A+ QHGR W++I+  + ++T  Q+R+HA  + +KV R
Sbjct:   51 TISKQREKWTEDEHKLFLEALQQHGRAWRRIQEHIGSKTAVQIRSHAQKFFSKVIR 106
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|128954 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z544_9STRA1.360e-33100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z6K2_9STRA1.250e-2273.58Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A2D4BZS8_PYTIN5.820e-1255.56Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
A0A2D4CHR8_PYTIN7.220e-1255.56Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A1V9Z3Y4_9STRA3.520e-1155.10Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A0C6WCU0_9POAL4.690e-1044.44ScMYB57 protein n=1 Tax=Saccharum hybrid cultivar ... [more]
F0W9K9_9STRA9.120e-1052.00Uncharacterized protein AlNc14C40G3464 n=1 Tax=Alb... [more]
B4FVU9_MAIZE1.500e-946.43Protein REVEILLE 1 n=4 Tax=Zea mays TaxID=4577 Rep... [more]
A0A835BMQ2_9POAL2.770e-944.64Uncharacterized protein n=2 Tax=Digitaria exilis T... [more]
A0A3L6FPD6_MAIZE2.810e-944.64Protein REVEILLE 1 n=5 Tax=Zea mays TaxID=4577 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_222contigContig_222:136125..136292 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|128954|gw1.222.1.1
DescriptionSANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
COG categoryK
Max annot lvl121069|Pythiales
EggNOG OGsKOG0724@1|root,KOG0724@2759|Eukaryota,1MGUD@121069|Pythiales
Evalue1.43e-11
Seed ortholog36331.EPrPI00000014329
Hectar predicted targeting categoryno signal peptide or anchor
TranscriptId129276
TrackFilteredModels1
ProteinId128954
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|128954gene_17452Tribonema minus UTEX_B_3156 geneContig_222 136125..136292 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17452_1exon_17452_1Tribonema minus UTEX_B_3156 exonContig_222 136125..136292 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17452CDS_17452Tribonema minus UTEX_B_3156 CDSContig_222 136125..136292 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|128954Trimin1|128954|gw1.222.1.1Tribonema minus UTEX_B_3156 polypeptideContig_222 136125..136292 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17452 ID=mRNA_17452|Name=jgi.p|Trimin1|128954|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=168bp|location=Sequence derived from alignment at Contig_222:136125..136292+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ACGCAGTCGAAGCGCGCCGAGCGCTGGTCGTCCGACGAGCACAGGGTCTT
CCTCAAGGCCATGACGCAGCACGGGCGGGACTGGAAGAAGATCAAGGCGC
AGCTGCCGACGCGCACGCTCACGCAGGTGCGCACGCACGCGTACTGGTAC
CTCGCCAAGGTCGAGCGC
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protein sequence of jgi.p|Trimin1|128954

>Trimin1|128954|gw1.222.1.1 ID=Trimin1|128954|gw1.222.1.1|Name=jgi.p|Trimin1|128954|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=56bp
TQSKRAERWSSDEHRVFLKAMTQHGRDWKKIKAQLPTRTLTQVRTHAYWY
LAKVER
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mRNA from alignment at Contig_222:136125..136292+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17452 ID=mRNA_17452|Name=jgi.p|Trimin1|128954|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=168bp|location=Sequence derived from alignment at Contig_222:136125..136292+ (Tribonema minus UTEX_B_3156 )
ACGCAGTCGAAGCGCGCCGAGCGCTGGTCGTCCGACGAGCACAGGGTCTT
CCTCAAGGCCATGACGCAGCACGGGCGGGACTGGAAGAAGATCAAGGCGC
AGCTGCCGACGCGCACGCTCACGCAGGTGCGCACGCACGCGTACTGGTAC
CTCGCCAAGGTCGAGCGC
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Coding sequence (CDS) from alignment at Contig_222:136125..136292+

>mRNA_17452 ID=mRNA_17452|Name=jgi.p|Trimin1|128954|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=168bp|location=Sequence derived from alignment at Contig_222:136125..136292+ (Tribonema minus UTEX_B_3156 )
ACGCAGTCGAAGCGCGCCGAGCGCTGGTCGTCCGACGAGCACAGGGTCTT
CCTCAAGGCCATGACGCAGCACGGGCGGGACTGGAAGAAGATCAAGGCGC
AGCTGCCGACGCGCACGCTCACGCAGGTGCGCACGCACGCGTACTGGTAC
CTCGCCAAGGTCGAGCGC
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