mRNA_17437 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|135975
Unique NamemRNA_17437
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|135975 vs. uniprot
Match: A0A835Z0U6_9STRA (HSF-type DNA-binding-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0U6_9STRA)

HSP 1 Score: 238 bits (606), Expect = 1.100e-79
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1
Query:    1 PAGFPHILASILENESADIIGWSQSGRSFGIREMNAFKDQILPQYFKHDKFSSFQRQLNLYGFRKIVKGNESGCYIHTYFRRGHPELLKQVRRGQMPPCPPRYEHKVYGS 330
            PAGFPHILASILENESADIIGWSQSGRSFGIREMNAFKDQILPQYFKHDKFSSFQRQLNLYGFRKIVKGNESGCYIHTYFRRGHPELLKQVRRGQMPPCPPRYEHKVYGS
Sbjct:    1 PAGFPHILASILENESADIIGWSQSGRSFGIREMNAFKDQILPQYFKHDKFSSFQRQLNLYGFRKIVKGNESGCYIHTYFRRGHPELLKQVRRGQMPPCPPRYEHKVYGS 110          
BLAST of jgi.p|Trimin1|135975 vs. uniprot
Match: A0A835YN41_9STRA (HSF-type DNA-binding-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN41_9STRA)

HSP 1 Score: 201 bits (510), Expect = 8.660e-63
Identity = 91/109 (83.49%), Postives = 99/109 (90.83%), Query Frame = 1
Query:    1 PAGFPHILASILENESADIIGWSQSGRSFGIREMNAFKDQILPQYFKHDKFSSFQRQLNLYGFRKIVKGNESGCYIHTYFRRGHPELLKQVRRGQMPPCPPRYEHKVYG 327
            PAGFP++L SILENES +II WS +GR+FGIR M AFK +ILPQYFKHDKFSSFQRQLNLYGFRKIVKG ESGCYIH YF+RGHPELLKQVRRGQ+PPCPPRYE KVYG
Sbjct:   21 PAGFPYVLISILENESPEIITWSSTGRAFGIRNMAAFKTKILPQYFKHDKFSSFQRQLNLYGFRKIVKGRESGCYIHCYFQRGHPELLKQVRRGQVPPCPPRYERKVYG 129          
BLAST of jgi.p|Trimin1|135975 vs. uniprot
Match: A0A835Z533_9STRA (HSF-type DNA-binding-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z533_9STRA)

HSP 1 Score: 160 bits (404), Expect = 7.100e-49
Identity = 69/108 (63.89%), Postives = 89/108 (82.41%), Query Frame = 1
Query:    7 GFPHILASILENESADIIGWSQSGRSFGIREMNAFKDQILPQYFKHDKFSSFQRQLNLYGFRKIVKGNESGCYIHTYFRRGHPELLKQVRRGQMPPCPPRYEHKVYGS 330
            GFPH+L +ILE E+ ++I W+ +GR+FGI++M  F+ Q+LP +FKHDKFSSFQRQLNLYGFRKIV+G E+G Y+H  F+RG  +LL  VRRG MPPCPP+YE K+YGS
Sbjct:    1 GFPHVLYNILEVEAPEVITWTSTGRAFGIQDMPRFRTQVLPTHFKHDKFSSFQRQLNLYGFRKIVRGKEAGGYMHKDFQRGRADLLPHVRRGHMPPCPPQYERKIYGS 108          
BLAST of jgi.p|Trimin1|135975 vs. uniprot
Match: A0A6H5L4Y2_9PHAE (HSF_DOMAIN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y2_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 2.750e-42
Identity = 67/108 (62.04%), Postives = 83/108 (76.85%), Query Frame = 1
Query:    7 GFPHILASILENESADIIGWSQSGRSFGIREMNAFKDQILPQYFKHDKFSSFQRQLNLYGFRKIVKGNESGCYIHTYFRRGHPELLKQVRRGQMPPCPPRYEHKVYGS 330
            GFP+IL  +L+NE++ I+ W+ +G +FGI +  AF   +L  YFKH+KFSSFQRQLNLYGFRKIVKG ESGCY+H  F R  P+LL +VRRG +PPCPP Y  KVYGS
Sbjct:    6 GFPYILHDLLKNEASAIVTWTSTGTAFGILDNAAFGQDVLSSYFKHNKFSSFQRQLNLYGFRKIVKGRESGCYMHPMFLRDRPDLLSEVRRGIVPPCPPEYTRKVYGS 113          
BLAST of jgi.p|Trimin1|135975 vs. uniprot
Match: A0A835YPY0_9STRA (HSF-type DNA-binding-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPY0_9STRA)

HSP 1 Score: 143 bits (361), Expect = 3.230e-42
Identity = 63/96 (65.62%), Postives = 79/96 (82.29%), Query Frame = 1
Query:   43 ESADIIGWSQSGRSFGIREMNAFKDQILPQYFKHDKFSSFQRQLNLYGFRKIVKGNESGCYIHTYFRRGHPELLKQVRRGQMPPCPPRYEHKVYGS 330
            E+ D+I W+ SG++FGI++M  F+  ILP++FKHDKFSSFQRQLNLYGFRKIV+G ESG Y+H  F+RG  +LLK V+RG MPPCPP YE K+YGS
Sbjct:    2 EAPDVIKWTSSGQAFGIQDMATFRTVILPKHFKHDKFSSFQRQLNLYGFRKIVRGRESGGYMHKDFQRGRLDLLKHVKRGYMPPCPPEYEKKIYGS 97          
BLAST of jgi.p|Trimin1|135975 vs. uniprot
Match: A0A6H5KNL3_9PHAE (HSF_DOMAIN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KNL3_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 1.280e-39
Identity = 65/108 (60.19%), Postives = 82/108 (75.93%), Query Frame = 1
Query:    7 GFPHILASILENESADIIGWSQSGRSFGIREMNAFKDQILPQYFKHDKFSSFQRQLNLYGFRKIVKGNESGCYIHTYFRRGHPELLKQVRRGQMPPCPPRYEHKVYGS 330
            GFP+IL  +L  ES  I+ W+ +G +FGIR+M +F+  +L  YFKH+KFSSFQRQLNLYGFRK+VKG ESGCY+H  F R  PE L +V+RG +PPCPP Y  K+YGS
Sbjct:    6 GFPYILYDLLNKESPSIVMWTSTGTAFGIRDMASFRQDVLTCYFKHNKFSSFQRQLNLYGFRKVVKGRESGCYMHPSFLRDSPEKLTEVKRGVVPPCPPCYSRKIYGS 113          
BLAST of jgi.p|Trimin1|135975 vs. uniprot
Match: D7FI12_ECTSI (Heat Shock transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI12_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 8.370e-39
Identity = 68/127 (53.54%), Postives = 83/127 (65.35%), Query Frame = 1
Query:    7 GFPHILASILE-------------------NESADIIGWSQSGRSFGIREMNAFKDQILPQYFKHDKFSSFQRQLNLYGFRKIVKGNESGCYIHTYFRRGHPELLKQVRRGQMPPCPPRYEHKVYGS 330
            GFP+IL  +L+                   NE++ I+ W+ +G +FGI +  AF   +L  YFKH+KFSSFQRQLNLYGFRKIVKG ESGCY+H  F R  PELL +VRRG +PPCPP Y  KVYGS
Sbjct:    6 GFPYILHDLLKTVLPACGTPPSLADNLAFVNEASAIVTWTSTGTAFGILDNAAFGQDVLSSYFKHNKFSSFQRQLNLYGFRKIVKGRESGCYMHPMFLRDRPELLSEVRRGVVPPCPPEYTRKVYGS 132          
BLAST of jgi.p|Trimin1|135975 vs. uniprot
Match: D8LU68_ECTSI (Heat Shock transcription factor (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU68_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 3.410e-31
Identity = 56/102 (54.90%), Postives = 73/102 (71.57%), Query Frame = 1
Query:   22 LASILENESADIIGWSQSGRSFGIREMNAFKDQILPQYFKHDKFSSFQRQLNLYGFRKIVKGNESGCYIHTYFRRGHPELLKQVRRGQMPPCPPRYEHKVYG 327
            L  IL+ E   +IGWS SG++F I +   F  +I+P++FK +K+SSFQRQLNLYGFRK+V+GNE+G Y+H  F RG PE L QVRRG  P  PP + H V+G
Sbjct:   56 LFQILKTEDPKVIGWSASGKAFRIGDSEKFCKEIMPRFFKQNKYSSFQRQLNLYGFRKLVRGNEAGGYMHPLFERGKPEQLSQVRRGFFPEIPPEFAHDVHG 157          
BLAST of jgi.p|Trimin1|135975 vs. uniprot
Match: A0A7S2BSE7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BSE7_9STRA)

HSP 1 Score: 113 bits (282), Expect = 5.980e-30
Identity = 54/93 (58.06%), Postives = 63/93 (67.74%), Query Frame = 1
Query:    1 PAGFPHILASILENESADIIGWSQSGRSFGIREMNAFKDQILPQYFKHDKFSSFQRQLNLYGFRKIVKGNESGCYIHTYFRRGHPELLKQVRR 279
            P  FP  L  IL  E  DIIGW+ SG+SF I+EM  F   IL +YF+H K+SSFQRQLNLYGFRK+ KG + G Y H  F R  PELL +VRR
Sbjct:   12 PQVFPRKLYEILSTEREDIIGWTDSGKSFIIKEMETFVTNILMKYFRHQKYSSFQRQLNLYGFRKVQKGTDVGSYAHECFIRDQPELLTKVRR 104          
BLAST of jgi.p|Trimin1|135975 vs. uniprot
Match: A0A7S2G7U9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G7U9_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.900e-29
Identity = 54/93 (58.06%), Postives = 65/93 (69.89%), Query Frame = 1
Query:    1 PAGFPHILASILENESADIIGWSQSGRSFGIREMNAFKDQILPQYFKHDKFSSFQRQLNLYGFRKIVKGNESGCYIHTYFRRGHPELLKQVRR 279
            P  FP  L  IL NE +D+IGW+ SG+SF I EM  F ++IL  YF+H K+SSFQRQLNLYGFRKI KG ++G Y H +F R  PE L  VRR
Sbjct:  104 PQVFPRKLYEILTNERSDVIGWTSSGKSFIILEMEIFVNEILMNYFRHQKYSSFQRQLNLYGFRKIQKGPDTGAYAHEHFLRDQPESLTFVRR 196          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|135975 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z0U6_9STRA1.100e-79100.00HSF-type DNA-binding-domain-containing protein (Fr... [more]
A0A835YN41_9STRA8.660e-6383.49HSF-type DNA-binding-domain-containing protein n=1... [more]
A0A835Z533_9STRA7.100e-4963.89HSF-type DNA-binding-domain-containing protein (Fr... [more]
A0A6H5L4Y2_9PHAE2.750e-4262.04HSF_DOMAIN domain-containing protein n=1 Tax=Ectoc... [more]
A0A835YPY0_9STRA3.230e-4265.63HSF-type DNA-binding-domain-containing protein n=1... [more]
A0A6H5KNL3_9PHAE1.280e-3960.19HSF_DOMAIN domain-containing protein n=2 Tax=Ectoc... [more]
D7FI12_ECTSI8.370e-3953.54Heat Shock transcription factor n=1 Tax=Ectocarpus... [more]
D8LU68_ECTSI3.410e-3154.90Heat Shock transcription factor (Partial) (Fragmen... [more]
A0A7S2BSE7_9STRA5.980e-3058.06Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2G7U9_9STRA1.900e-2958.06Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_222contigContig_222:31712..32321 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|135975|gw1.222.37.1
Descriptionheat shock factor
COG categoryK
Max annot lvl2836|Bacillariophyta
EggNOG OGsCOG5169@1|root,KOG0627@2759|Eukaryota,2XG5V@2836|Bacillariophyta
Evalue2.32e-23
Seed ortholog2850.Phatr42714
Hectar predicted targeting categoryother localisation
TranscriptId136297
TrackFilteredModels1
ProteinId135975
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|135975gene_17437Tribonema minus UTEX_B_3156 geneContig_222 31712..32321 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|135975Trimin1|135975|gw1.222.37.1Tribonema minus UTEX_B_3156 polypeptideContig_222 31712..32321 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17437_2exon_17437_2Tribonema minus UTEX_B_3156 exonContig_222 31712..31846 -
exon_17437_1exon_17437_1Tribonema minus UTEX_B_3156 exonContig_222 32127..32321 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17437CDS_17437Tribonema minus UTEX_B_3156 CDSContig_222 32127..32321 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17437 ID=mRNA_17437|Name=jgi.p|Trimin1|135975|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=330bp|location=Sequence derived from alignment at Contig_222:31712..32321- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CCGGCTGGTTTTCCACACATATTGGCCAGCATTCTGGAGAATGAGTCCGC
TGATATCATTGGATGGAGCCAGAGCGGGCGATCCTTTGGCATCAGGGAGA
TGAATGCCTTCAAGGACCAGATACTACCCCAGTACTTCAAGCATGACAAG
TTCAGCAGCTTCCAACGGCAGCTCAATCTTTATGGCTTCCGAAAGATCGT
CAAGGGCAACGAGAGCGGCTGCTACATCCACACCTACTTCCGCCGCGGCC
ACCCGGAGCTCCTCAAGCAGGTGCGCCGCGGCCAGATGCCGCCGTGCCCC
CCGCGCTACGAGCACAAGGTCTACGGCTCC
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protein sequence of jgi.p|Trimin1|135975

>Trimin1|135975|gw1.222.37.1 ID=Trimin1|135975|gw1.222.37.1|Name=jgi.p|Trimin1|135975|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=110bp
PAGFPHILASILENESADIIGWSQSGRSFGIREMNAFKDQILPQYFKHDK
FSSFQRQLNLYGFRKIVKGNESGCYIHTYFRRGHPELLKQVRRGQMPPCP
PRYEHKVYGS
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mRNA from alignment at Contig_222:31712..32321-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17437 ID=mRNA_17437|Name=jgi.p|Trimin1|135975|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=610bp|location=Sequence derived from alignment at Contig_222:31712..32321- (Tribonema minus UTEX_B_3156 )
CCGGCTGGTTTTCCACACATATTGGCCAGCATTCTGGAGAATGAGTCCGC TGATATCATTGGATGGAGCCAGAGCGGGCGATCCTTTGGCATCAGGGAGA TGAATGCCTTCAAGGACCAGATACTACCCCAGTACTTCAAGCATGACAAG TTCAGCAGCTTCCAACGGCAGCTCAATCTTTATGGCTTCCGAAAGGTGAG AGTGTGGATCCGTAAGGTGCACCGCTCAGTTGAAGTTACCCTCCTCTCGA TCCAGGATTTGAACTTCGAGTCAACCCAAAAGCCTGCAGTTGCTTCAACA CTACTGCACAGCGTGCTGGCCTCACACAGGCAGCGATGACGGCGGCGCTG CTTCTCTCTCGTTTACCACCGTCCCAGCACACGCCGCACATCAGGATCGT CCATGTGGACAAGCACCTGCACTCACCCCCCCCCCCCCCCGCCATCTCCC CCCTCCCCCCCCCCCCCCCCCCAAGATCGTCAAGGGCAACGAGAGCGGCT GCTACATCCACACCTACTTCCGCCGCGGCCACCCGGAGCTCCTCAAGCAG GTGCGCCGCGGCCAGATGCCGCCGTGCCCCCCGCGCTACGAGCACAAGGT CTACGGCTCC
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Coding sequence (CDS) from alignment at Contig_222:31712..32321-

>mRNA_17437 ID=mRNA_17437|Name=jgi.p|Trimin1|135975|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=330bp|location=Sequence derived from alignment at Contig_222:31712..32321- (Tribonema minus UTEX_B_3156 )
CCGGCTGGTTTTCCACACATATTGGCCAGCATTCTGGAGAATGAGTCCGC
TGATATCATTGGATGGAGCCAGAGCGGGCGATCCTTTGGCATCAGGGAGA
TGAATGCCTTCAAGGACCAGATACTACCCCAGTACTTCAAGCATGACAAG
TTCAGCAGCTTCCAACGGCAGCTCAATCTTTATGGCTTCCGAAAGATCGT
CAAGGGCAACGAGAGCGGCTGCTACATCCACACCTACTTCCGCCGCGGCC
ACCCGGAGCTCCTCAAGCAGGTGCGCCGCGGCCAGATGCCGCCGTGCCCC
CCGCGCTACGAGCACAAGGTCTACGGCTCC
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