mRNA_17437 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|135975 vs. uniprot
Match: A0A835Z0U6_9STRA (HSF-type DNA-binding-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0U6_9STRA) HSP 1 Score: 238 bits (606), Expect = 1.100e-79 Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 Query: 1 PAGFPHILASILENESADIIGWSQSGRSFGIREMNAFKDQILPQYFKHDKFSSFQRQLNLYGFRKIVKGNESGCYIHTYFRRGHPELLKQVRRGQMPPCPPRYEHKVYGS 330 PAGFPHILASILENESADIIGWSQSGRSFGIREMNAFKDQILPQYFKHDKFSSFQRQLNLYGFRKIVKGNESGCYIHTYFRRGHPELLKQVRRGQMPPCPPRYEHKVYGS Sbjct: 1 PAGFPHILASILENESADIIGWSQSGRSFGIREMNAFKDQILPQYFKHDKFSSFQRQLNLYGFRKIVKGNESGCYIHTYFRRGHPELLKQVRRGQMPPCPPRYEHKVYGS 110
BLAST of jgi.p|Trimin1|135975 vs. uniprot
Match: A0A835YN41_9STRA (HSF-type DNA-binding-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN41_9STRA) HSP 1 Score: 201 bits (510), Expect = 8.660e-63 Identity = 91/109 (83.49%), Postives = 99/109 (90.83%), Query Frame = 1 Query: 1 PAGFPHILASILENESADIIGWSQSGRSFGIREMNAFKDQILPQYFKHDKFSSFQRQLNLYGFRKIVKGNESGCYIHTYFRRGHPELLKQVRRGQMPPCPPRYEHKVYG 327 PAGFP++L SILENES +II WS +GR+FGIR M AFK +ILPQYFKHDKFSSFQRQLNLYGFRKIVKG ESGCYIH YF+RGHPELLKQVRRGQ+PPCPPRYE KVYG Sbjct: 21 PAGFPYVLISILENESPEIITWSSTGRAFGIRNMAAFKTKILPQYFKHDKFSSFQRQLNLYGFRKIVKGRESGCYIHCYFQRGHPELLKQVRRGQVPPCPPRYERKVYG 129
BLAST of jgi.p|Trimin1|135975 vs. uniprot
Match: A0A835Z533_9STRA (HSF-type DNA-binding-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z533_9STRA) HSP 1 Score: 160 bits (404), Expect = 7.100e-49 Identity = 69/108 (63.89%), Postives = 89/108 (82.41%), Query Frame = 1 Query: 7 GFPHILASILENESADIIGWSQSGRSFGIREMNAFKDQILPQYFKHDKFSSFQRQLNLYGFRKIVKGNESGCYIHTYFRRGHPELLKQVRRGQMPPCPPRYEHKVYGS 330 GFPH+L +ILE E+ ++I W+ +GR+FGI++M F+ Q+LP +FKHDKFSSFQRQLNLYGFRKIV+G E+G Y+H F+RG +LL VRRG MPPCPP+YE K+YGS Sbjct: 1 GFPHVLYNILEVEAPEVITWTSTGRAFGIQDMPRFRTQVLPTHFKHDKFSSFQRQLNLYGFRKIVRGKEAGGYMHKDFQRGRADLLPHVRRGHMPPCPPQYERKIYGS 108
BLAST of jgi.p|Trimin1|135975 vs. uniprot
Match: A0A6H5L4Y2_9PHAE (HSF_DOMAIN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y2_9PHAE) HSP 1 Score: 151 bits (381), Expect = 2.750e-42 Identity = 67/108 (62.04%), Postives = 83/108 (76.85%), Query Frame = 1 Query: 7 GFPHILASILENESADIIGWSQSGRSFGIREMNAFKDQILPQYFKHDKFSSFQRQLNLYGFRKIVKGNESGCYIHTYFRRGHPELLKQVRRGQMPPCPPRYEHKVYGS 330 GFP+IL +L+NE++ I+ W+ +G +FGI + AF +L YFKH+KFSSFQRQLNLYGFRKIVKG ESGCY+H F R P+LL +VRRG +PPCPP Y KVYGS Sbjct: 6 GFPYILHDLLKNEASAIVTWTSTGTAFGILDNAAFGQDVLSSYFKHNKFSSFQRQLNLYGFRKIVKGRESGCYMHPMFLRDRPDLLSEVRRGIVPPCPPEYTRKVYGS 113
BLAST of jgi.p|Trimin1|135975 vs. uniprot
Match: A0A835YPY0_9STRA (HSF-type DNA-binding-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPY0_9STRA) HSP 1 Score: 143 bits (361), Expect = 3.230e-42 Identity = 63/96 (65.62%), Postives = 79/96 (82.29%), Query Frame = 1 Query: 43 ESADIIGWSQSGRSFGIREMNAFKDQILPQYFKHDKFSSFQRQLNLYGFRKIVKGNESGCYIHTYFRRGHPELLKQVRRGQMPPCPPRYEHKVYGS 330 E+ D+I W+ SG++FGI++M F+ ILP++FKHDKFSSFQRQLNLYGFRKIV+G ESG Y+H F+RG +LLK V+RG MPPCPP YE K+YGS Sbjct: 2 EAPDVIKWTSSGQAFGIQDMATFRTVILPKHFKHDKFSSFQRQLNLYGFRKIVRGRESGGYMHKDFQRGRLDLLKHVKRGYMPPCPPEYEKKIYGS 97
BLAST of jgi.p|Trimin1|135975 vs. uniprot
Match: A0A6H5KNL3_9PHAE (HSF_DOMAIN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KNL3_9PHAE) HSP 1 Score: 149 bits (376), Expect = 1.280e-39 Identity = 65/108 (60.19%), Postives = 82/108 (75.93%), Query Frame = 1 Query: 7 GFPHILASILENESADIIGWSQSGRSFGIREMNAFKDQILPQYFKHDKFSSFQRQLNLYGFRKIVKGNESGCYIHTYFRRGHPELLKQVRRGQMPPCPPRYEHKVYGS 330 GFP+IL +L ES I+ W+ +G +FGIR+M +F+ +L YFKH+KFSSFQRQLNLYGFRK+VKG ESGCY+H F R PE L +V+RG +PPCPP Y K+YGS Sbjct: 6 GFPYILYDLLNKESPSIVMWTSTGTAFGIRDMASFRQDVLTCYFKHNKFSSFQRQLNLYGFRKVVKGRESGCYMHPSFLRDSPEKLTEVKRGVVPPCPPCYSRKIYGS 113
BLAST of jgi.p|Trimin1|135975 vs. uniprot
Match: D7FI12_ECTSI (Heat Shock transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI12_ECTSI) HSP 1 Score: 141 bits (355), Expect = 8.370e-39 Identity = 68/127 (53.54%), Postives = 83/127 (65.35%), Query Frame = 1 Query: 7 GFPHILASILE-------------------NESADIIGWSQSGRSFGIREMNAFKDQILPQYFKHDKFSSFQRQLNLYGFRKIVKGNESGCYIHTYFRRGHPELLKQVRRGQMPPCPPRYEHKVYGS 330 GFP+IL +L+ NE++ I+ W+ +G +FGI + AF +L YFKH+KFSSFQRQLNLYGFRKIVKG ESGCY+H F R PELL +VRRG +PPCPP Y KVYGS Sbjct: 6 GFPYILHDLLKTVLPACGTPPSLADNLAFVNEASAIVTWTSTGTAFGILDNAAFGQDVLSSYFKHNKFSSFQRQLNLYGFRKIVKGRESGCYMHPMFLRDRPELLSEVRRGVVPPCPPEYTRKVYGS 132
BLAST of jgi.p|Trimin1|135975 vs. uniprot
Match: D8LU68_ECTSI (Heat Shock transcription factor (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU68_ECTSI) HSP 1 Score: 125 bits (313), Expect = 3.410e-31 Identity = 56/102 (54.90%), Postives = 73/102 (71.57%), Query Frame = 1 Query: 22 LASILENESADIIGWSQSGRSFGIREMNAFKDQILPQYFKHDKFSSFQRQLNLYGFRKIVKGNESGCYIHTYFRRGHPELLKQVRRGQMPPCPPRYEHKVYG 327 L IL+ E +IGWS SG++F I + F +I+P++FK +K+SSFQRQLNLYGFRK+V+GNE+G Y+H F RG PE L QVRRG P PP + H V+G Sbjct: 56 LFQILKTEDPKVIGWSASGKAFRIGDSEKFCKEIMPRFFKQNKYSSFQRQLNLYGFRKLVRGNEAGGYMHPLFERGKPEQLSQVRRGFFPEIPPEFAHDVHG 157
BLAST of jgi.p|Trimin1|135975 vs. uniprot
Match: A0A7S2BSE7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BSE7_9STRA) HSP 1 Score: 113 bits (282), Expect = 5.980e-30 Identity = 54/93 (58.06%), Postives = 63/93 (67.74%), Query Frame = 1 Query: 1 PAGFPHILASILENESADIIGWSQSGRSFGIREMNAFKDQILPQYFKHDKFSSFQRQLNLYGFRKIVKGNESGCYIHTYFRRGHPELLKQVRR 279 P FP L IL E DIIGW+ SG+SF I+EM F IL +YF+H K+SSFQRQLNLYGFRK+ KG + G Y H F R PELL +VRR Sbjct: 12 PQVFPRKLYEILSTEREDIIGWTDSGKSFIIKEMETFVTNILMKYFRHQKYSSFQRQLNLYGFRKVQKGTDVGSYAHECFIRDQPELLTKVRR 104
BLAST of jgi.p|Trimin1|135975 vs. uniprot
Match: A0A7S2G7U9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G7U9_9STRA) HSP 1 Score: 114 bits (284), Expect = 1.900e-29 Identity = 54/93 (58.06%), Postives = 65/93 (69.89%), Query Frame = 1 Query: 1 PAGFPHILASILENESADIIGWSQSGRSFGIREMNAFKDQILPQYFKHDKFSSFQRQLNLYGFRKIVKGNESGCYIHTYFRRGHPELLKQVRR 279 P FP L IL NE +D+IGW+ SG+SF I EM F ++IL YF+H K+SSFQRQLNLYGFRKI KG ++G Y H +F R PE L VRR Sbjct: 104 PQVFPRKLYEILTNERSDVIGWTSSGKSFIILEMEIFVNEILMNYFRHQKYSSFQRQLNLYGFRKIQKGPDTGAYAHEHFLRDQPESLTFVRR 196 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|135975 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_17437 ID=mRNA_17437|Name=jgi.p|Trimin1|135975|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=330bp|location=Sequence derived from alignment at Contig_222:31712..32321- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CCGGCTGGTTTTCCACACATATTGGCCAGCATTCTGGAGAATGAGTCCGCback to top protein sequence of jgi.p|Trimin1|135975 >Trimin1|135975|gw1.222.37.1 ID=Trimin1|135975|gw1.222.37.1|Name=jgi.p|Trimin1|135975|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=110bp PAGFPHILASILENESADIIGWSQSGRSFGIREMNAFKDQILPQYFKHDKback to top mRNA from alignment at Contig_222:31712..32321- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_17437 ID=mRNA_17437|Name=jgi.p|Trimin1|135975|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=610bp|location=Sequence derived from alignment at Contig_222:31712..32321- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_222:31712..32321- >mRNA_17437 ID=mRNA_17437|Name=jgi.p|Trimin1|135975|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=330bp|location=Sequence derived from alignment at Contig_222:31712..32321- (Tribonema minus UTEX_B_3156 )back to top |