mRNA_17412 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|154389
Unique NamemRNA_17412
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|154389 vs. uniprot
Match: A0A835Z2G3_9STRA (HSF_DOMAIN domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2G3_9STRA)

HSP 1 Score: 219 bits (559), Expect = 1.130e-72
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 
Query:    1 FVCKLIEMLDAPEEGSVVWAPGGQGFRVLDEDALERRALPRFFKDVSHPPRARHRYASFRRQLNLYGFIKQRKGALAGCYTHPCFRAGDAQLLALITRRKSSSEP 315
            FVCKLIEMLDAPEEGSVVWAPGGQGFRVLDEDALERRALPRFFKDVSHPPRARHRYASFRRQLNLYGFIKQRKGALAGCYTHPCFRAGDAQLLALITRRKSSSEP
Sbjct:    1 FVCKLIEMLDAPEEGSVVWAPGGQGFRVLDEDALERRALPRFFKDVSHPPRARHRYASFRRQLNLYGFIKQRKGALAGCYTHPCFRAGDAQLLALITRRKSSSEP 105
[Close]
BLAST of jgi.p|Trimin1|154389 vs. uniprot
Match: A0A6V1QFS1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QFS1_HETAK)

HSP 1 Score: 73.9 bits (180), Expect = 3.160e-13
Identity = 41/105 (39.05%), Postives = 56/105 (53.33%), Query Frame = 1 
Query:    1 FVCKLIEMLDAPEEGSVVWAPGGQGFRVLDEDALERRALPRFFKDVSHPPRARHRYASFRRQLNLYGFIKQRKGALAGCYTHPCFRAGDAQLLALITRRKSSSEP 315
            F  KL E+L+      + W   G  F V D D   +  L ++F+          ++ASF+RQLNLYGF K  +G+ AG Y H  FR G   LL+L+ R +SSS P
Sbjct:   15 FARKLYEILEVEPGDLLSWNAAGNAFFVRDIDRFSKEILMKYFRHS--------KFASFQRQLNLYGFRKITRGSDAGSYAHQYFRKGKPDLLSLVRRSQSSSSP 111
[Close]
BLAST of jgi.p|Trimin1|154389 vs. uniprot
Match: B8BYI5_THAPS (HSF_DOMAIN domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BYI5_THAPS)

HSP 1 Score: 68.9 bits (167), Expect = 8.450e-12
Identity = 37/106 (34.91%), Postives = 56/106 (52.83%), Query Frame = 1 
Query:    1 FVCKLIEMLDAPEEGS------VVWAPGGQGFRVLDEDALERRALPRFFKDVSHPPRARHRYASFRRQLNLYGFIKQRKGALAGCYTHPCFRAGDAQLLALITRRK 300
            F  KL +ML+   EG       V WA  G GF++ +        LP++FK          +++SF+R LNLYGF+K R+G     Y++  F  GD  +L+ +T+RK
Sbjct:   28 FPRKLYDMLEIESEGQSESTCCVHWAASGSGFKIANVAKFSEVVLPKYFKTS--------KFSSFQRNLNLYGFVKNRRGPEVDVYSNAKFNRGDLDMLSHLTKRK 125
[Close]
BLAST of jgi.p|Trimin1|154389 vs. uniprot
Match: A0A286UVW5_9AGAM (Transcription factor hsf1 n=1 Tax=Pyrrhoderma noxium TaxID=2282107 RepID=A0A286UVW5_9AGAM)

HSP 1 Score: 69.3 bits (168), Expect = 1.510e-11
Identity = 45/115 (39.13%), Postives = 61/115 (53.04%), Query Frame = 1 
Query:    1 FVCKLIEML-DAPEEGSVVWAPGGQGFRVLDEDALERRALPRFFKDVSHPPRARHRYASFRRQLNLYGFIK---QRKGALAGC-------YTHPCFRAGDAQLLALITRRKSSSE 312
            F+ KL EM+ DA  +  + W+ GG  F VLD + +    LPR+FK  +        +ASF RQLN+YGF K    ++G L          + HP FR G   LL LI R+K +SE
Sbjct:   31 FLQKLYEMVCDAQTDNLIRWSDGGDSFFVLDHERVAHDVLPRWFKHSN--------FASFVRQLNMYGFHKIPHLQQGVLKSDTETEIWNFEHPNFRRGQPDLLCLINRKKQASE 137
[Close]
BLAST of jgi.p|Trimin1|154389 vs. uniprot
Match: UPI0004E9F0C3 (Heat shock factor protein 2 n=1 Tax=Passalora fulva TaxID=5499 RepID=UPI0004E9F0C3)

HSP 1 Score: 68.9 bits (167), Expect = 2.070e-11
Identity = 47/118 (39.83%), Postives = 55/118 (46.61%), Query Frame = 1 
Query:    1 FVCKLIEMLDAPEEGSVVWAPGGQGFRVLDEDALERRALPRFFKDVSHPPRARHRYASFRRQLNLYGFIKQ--------------RKGALA-GCYTHPCFRAGDAQLLALITRRKSSS 309
            FV KL   LD   E  + W+  G+ F VLDED   RR +P  FK         + YASF RQLN+YGF K               RKGA     Y+HP FR     LL LI +  S S
Sbjct:  149 FVQKLSSFLDKEHESLIRWSDDGRAFIVLDEDEFARRLIPELFKH--------NNYASFVRQLNMYGFHKTVNIHDGSLRQSEQARKGAKPPSMYSHPYFRRNRPDLLWLIQKPASKS 258
[Close]
BLAST of jgi.p|Trimin1|154389 vs. uniprot
Match: A0A7R9UD31_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UD31_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 2.750e-11
Identity = 38/104 (36.54%), Postives = 56/104 (53.85%), Query Frame = 1 
Query:    1 FVCKLIEMLDAPEEGSVVWAPGGQGFRVLDEDALERRALPRFFKDVSHPPRARHRYASFRRQLNLYGFIKQRKGALAGCYTHPCFRAGDAQLLALITR--RKSS 306
            F  KL+ ++D  ++  + WA  G  F ++++   E   LPR+F           ++ASF+RQLNLYGF +  +G   G Y HP F  G A LL  + R  RK+S
Sbjct:   13 FPAKLMHIIDHEDDNIIRWAENGACFVIVNQKRFEMETLPRYFHHG--------KFASFQRQLNLYGFRRISRGPSEGFYFHPSFHCGRADLLQGVKRLPRKTS 108
[Close]
BLAST of jgi.p|Trimin1|154389 vs. uniprot
Match: A0A7R9YBQ9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBQ9_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 3.630e-11
Identity = 36/98 (36.73%), Postives = 51/98 (52.04%), Query Frame = 1 
Query:    1 FVCKLIEMLDAPEEGSVVWAPGGQGFRVLDEDALERRALPRFFKDVSHPPRARHRYASFRRQLNLYGFIKQRKGALAGCYTHPCFRAGDAQLLALITR 294
            F  KL E+L+  +   + W   G+ F + D D   R +L R+FK         H++ SF+RQLNLYGF K  KG   G Y HP F+    + L+ + R
Sbjct:   60 FPRKLFELLEKEDSAVIRWDEEGECFVIQDMDTFTRESLERYFKH--------HKFTSFQRQLNLYGFRKIAKGERCGYYVHPHFQRDHPEWLSKVRR 149
[Close]
BLAST of jgi.p|Trimin1|154389 vs. uniprot
Match: M2WMC3_DOTSN (HSF_DOMAIN domain-containing protein n=1 Tax=Dothistroma septosporum (strain NZE10 / CBS 128990) TaxID=675120 RepID=M2WMC3_DOTSN)

HSP 1 Score: 68.2 bits (165), Expect = 3.860e-11
Identity = 47/118 (39.83%), Postives = 55/118 (46.61%), Query Frame = 1 
Query:    1 FVCKLIEMLDAPEEGSVVWAPGGQGFRVLDEDALERRALPRFFKDVSHPPRARHRYASFRRQLNLYGFIKQ--------------RKGALA-GCYTHPCFRAGDAQLLALITRRKSSS 309
            FV KL   LD   E  + W+  G+ F VLDED   RR +P  FK         + YASF RQLN+YGF K               RKGA     Y+HP FR     LL LI +  S S
Sbjct:  148 FVQKLSSFLDKEHEELIRWSDDGRAFIVLDEDEFARRLIPELFKH--------NNYASFVRQLNMYGFHKTVNIHDGSLRQSEQARKGAKPPSMYSHPYFRRNRPDLLWLIQKPASKS 257
[Close]
BLAST of jgi.p|Trimin1|154389 vs. uniprot
Match: A0A7S4D949_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D949_HETAK)

HSP 1 Score: 67.4 bits (163), Expect = 6.510e-11
Identity = 42/106 (39.62%), Postives = 52/106 (49.06%), Query Frame = 1 
Query:    1 FVCKLIEMLDAPEEGSVV-WAPGGQGFRVLDEDALERRALPRFFKDVSHPPRARHRYASFRRQLNLYGFIKQRKGALAGCYTHPCFRAGDAQLLALITRRKSSSEP 315
            F  KL E+L+  E  S   W   G  F V   D      LP++FK          ++ASF+RQLNLYGF K  KG  +G Y H  F  G  QLL  + R  SS+ P
Sbjct:    5 FARKLFEILEDEEYRSYTFWNADGNAFFVRQVDEFLNEILPKYFKQS--------KFASFQRQLNLYGFRKVTKGPDSGAYAHRYFLRGQEQLLHKVRRHTSSTGP 102
[Close]
BLAST of jgi.p|Trimin1|154389 vs. uniprot
Match: A0A225AL46_9EURO (HSF_DOMAIN domain-containing protein n=1 Tax=Talaromyces atroroseus TaxID=1441469 RepID=A0A225AL46_9EURO)

HSP 1 Score: 67.0 bits (162), Expect = 9.860e-11
Identity = 44/116 (37.93%), Postives = 56/116 (48.28%), Query Frame = 1 
Query:    1 FVCKLIEMLDAPEEGSVV-WAPGGQGFRVLDEDALERRALPRFFKDVSHPPRARHRYASFRRQLNLYGFIK------------QRKGALAGCYTHPCFRAGDAQLLALITRRKSSS 309
            FV KL   LD P+    + W+  G  F VLDED   RR +P  FK         ++YASF RQLN+YGF K            +RK      Y +P F+ G   LL LI + K+ S
Sbjct:  147 FVQKLRSFLDEPQYADFIRWSDDGNSFIVLDEDEFARRLIPELFKH--------NKYASFVRQLNMYGFHKKVGLSDNSMRASERKNKSPSEYANPYFKRGHPDLLWLIQKPKNVS 254
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|154389 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z2G3_9STRA1.130e-72100.00HSF_DOMAIN domain-containing protein (Fragment) n=... [more]
A0A6V1QFS1_HETAK3.160e-1339.05Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
B8BYI5_THAPS8.450e-1234.91HSF_DOMAIN domain-containing protein n=1 Tax=Thala... [more]
A0A286UVW5_9AGAM1.510e-1139.13Transcription factor hsf1 n=1 Tax=Pyrrhoderma noxi... [more]
UPI0004E9F0C32.070e-1139.83Heat shock factor protein 2 n=1 Tax=Passalora fulv... [more]
A0A7R9UD31_9STRA2.750e-1136.54Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7R9YBQ9_9STRA3.630e-1136.73Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
M2WMC3_DOTSN3.860e-1139.83HSF_DOMAIN domain-containing protein n=1 Tax=Dothi... [more]
A0A7S4D949_HETAK6.510e-1139.62Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A225AL46_9EURO9.860e-1137.93HSF_DOMAIN domain-containing protein n=1 Tax=Talar... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_206contigContig_206:36484..36798 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|154389|gw1.206.21.1
BRITEko00000,ko00001,ko03000
KEGG Pathwayko04212,ko05134,map04212,map05134
KEGG koko:K09414,ko:K09419
GOsGO:0000228,GO:0000785,GO:0000790,GO:0000976,GO:0000977,GO:0000978,GO:0000981,GO:0000982,GO:0000987,GO:0001012,GO:0001067,GO:0001077,GO:0001228,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005739,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006725,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010646,GO:0010648,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0023051,GO:0023057,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032006,GO:0032007,GO:0032774,GO:0032879,GO:0032880,GO:0032991,GO:0032993,GO:0033554,GO:0034605,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0060255,GO:0060341,GO:0065007,GO:0070013,GO:0070201,GO:0070202,GO:0071704,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1900034,GO:1900036,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902531,GO:1902532,GO:1902680,GO:1903506,GO:1903508,GO:1903827,GO:1990837,GO:2000112,GO:2001141
Preferred nameCTA8
Descriptionheat shock
COG categoryK
Max annot lvl33154|Opisthokonta
EggNOG OGsCOG5169@1|root,KOG0627@2759|Eukaryota,38BXQ@33154|Opisthokonta
Evalue1.44e-13
Seed ortholog72019.SARC_06791T0
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHeat Shock transcription factor
Ec32 orthologEc-27_002110.1
TranscriptId154711
TrackFilteredModels1
ProteinId154389
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|154389gene_17412Tribonema minus UTEX_B_3156 geneContig_206 36484..36798 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17412_1exon_17412_1Tribonema minus UTEX_B_3156 exonContig_206 36484..36798 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17412CDS_17412Tribonema minus UTEX_B_3156 CDSContig_206 36484..36798 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|154389Trimin1|154389|gw1.206.21.1Tribonema minus UTEX_B_3156 polypeptideContig_206 36484..36798 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17412 ID=mRNA_17412|Name=jgi.p|Trimin1|154389|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=315bp|location=Sequence derived from alignment at Contig_206:36484..36798- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TTCGTCTGCAAGCTCATCGAAATGCTGGACGCCCCGGAGGAGGGCTCCGT
GGTGTGGGCGCCGGGGGGGCAGGGGTTCCGGGTGCTCGACGAGGACGCGC
TGGAGCGGCGAGCGCTGCCGCGCTTCTTTAAGGACGTCTCGCACCCGCCG
CGCGCGCGCCACCGCTACGCGTCGTTCCGGCGCCAGCTCAACCTGTACGG
CTTTATCAAGCAGCGCAAGGGCGCGCTGGCAGGGTGCTACACCCACCCCT
GCTTCCGCGCGGGCGACGCGCAGCTGCTCGCGCTCATCACGCGCCGCAAG
AGCAGCAGCGAGCCG
back to top

protein sequence of jgi.p|Trimin1|154389

>Trimin1|154389|gw1.206.21.1 ID=Trimin1|154389|gw1.206.21.1|Name=jgi.p|Trimin1|154389|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=105bp
FVCKLIEMLDAPEEGSVVWAPGGQGFRVLDEDALERRALPRFFKDVSHPP
RARHRYASFRRQLNLYGFIKQRKGALAGCYTHPCFRAGDAQLLALITRRK
SSSEP
back to top

mRNA from alignment at Contig_206:36484..36798-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17412 ID=mRNA_17412|Name=jgi.p|Trimin1|154389|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=315bp|location=Sequence derived from alignment at Contig_206:36484..36798- (Tribonema minus UTEX_B_3156 )
TTCGTCTGCAAGCTCATCGAAATGCTGGACGCCCCGGAGGAGGGCTCCGT
GGTGTGGGCGCCGGGGGGGCAGGGGTTCCGGGTGCTCGACGAGGACGCGC
TGGAGCGGCGAGCGCTGCCGCGCTTCTTTAAGGACGTCTCGCACCCGCCG
CGCGCGCGCCACCGCTACGCGTCGTTCCGGCGCCAGCTCAACCTGTACGG
CTTTATCAAGCAGCGCAAGGGCGCGCTGGCAGGGTGCTACACCCACCCCT
GCTTCCGCGCGGGCGACGCGCAGCTGCTCGCGCTCATCACGCGCCGCAAG
AGCAGCAGCGAGCCG
back to top

Coding sequence (CDS) from alignment at Contig_206:36484..36798-

>mRNA_17412 ID=mRNA_17412|Name=jgi.p|Trimin1|154389|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=315bp|location=Sequence derived from alignment at Contig_206:36484..36798- (Tribonema minus UTEX_B_3156 )
TTCGTCTGCAAGCTCATCGAAATGCTGGACGCCCCGGAGGAGGGCTCCGT
GGTGTGGGCGCCGGGGGGGCAGGGGTTCCGGGTGCTCGACGAGGACGCGC
TGGAGCGGCGAGCGCTGCCGCGCTTCTTTAAGGACGTCTCGCACCCGCCG
CGCGCGCGCCACCGCTACGCGTCGTTCCGGCGCCAGCTCAACCTGTACGG
CTTTATCAAGCAGCGCAAGGGCGCGCTGGCAGGGTGCTACACCCACCCCT
GCTTCCGCGCGGGCGACGCGCAGCTGCTCGCGCTCATCACGCGCCGCAAG
AGCAGCAGCGAGCCG
back to top