mRNA_1741 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|154282
Unique NamemRNA_1741
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|154282 vs. uniprot
Match: A0A835YUU2_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUU2_9STRA)

HSP 1 Score: 549 bits (1415), Expect = 1.590e-197
Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 1
Query:    1 MEKYRRIEELGRGAFGCATLVTNGAGERCVVKEISLGHLAPREREAAEREAQLLRQMHHSNIVSYIESFVEDSSLYIVMDYADGGDLASAIAARRAPPRRPFAEGEVMRVFAQVCLALRHVHALNILHRDLKAPNIFLTARGVVKLGDFGVARALEASTGGACARTQIGTPHYLSPEICQDQPYGKKSDMWALGVVLYEMFALRVPFQAGNLPALANKIVSEDPPPIPDCYSADGCALVAQLLAKAPRQRPSVGQVLRGVYLQAHIAKLLAHAARTG 831
            MEKYRRIEELGRGAFGCATLVTNGAGERCVVKEISLGHLAPREREAAEREAQLLRQMHHSNIVSYIESFVEDSSLYIVMDYADGGDLASAIAARRAPPRRPFAEGEVMRVFAQVCLALRHVHALNILHRDLKAPNIFLTARGVVKLGDFGVARALEASTGGACARTQIGTPHYLSPEICQDQPYGKKSDMWALGVVLYEMFALRVPFQAGNLPALANKIVSEDPPPIPDCYSADGCALVAQLLAKAPRQRPSVGQVLRGVYLQAHIAKLLAHAARTG
Sbjct:    1 MEKYRRIEELGRGAFGCATLVTNGAGERCVVKEISLGHLAPREREAAEREAQLLRQMHHSNIVSYIESFVEDSSLYIVMDYADGGDLASAIAARRAPPRRPFAEGEVMRVFAQVCLALRHVHALNILHRDLKAPNIFLTARGVVKLGDFGVARALEASTGGACARTQIGTPHYLSPEICQDQPYGKKSDMWALGVVLYEMFALRVPFQAGNLPALANKIVSEDPPPIPDCYSADGCALVAQLLAKAPRQRPSVGQVLRGVYLQAHIAKLLAHAARTG 277          
BLAST of jgi.p|Trimin1|154282 vs. uniprot
Match: A0A7S1G2Z5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G2Z5_9STRA)

HSP 1 Score: 276 bits (707), Expect = 3.690e-86
Identity = 135/272 (49.63%), Postives = 196/272 (72.06%), Query Frame = 1
Query:    1 MEKYRRIEELGRGAFGCATLVTNGAG--ERCVVKEISLGHLAPREREAAEREAQLLRQMHHSNIVSYIESFVEDSSLYIVMDYADGGDLASAIAARRAPPRRPFAEGEVMRVFAQVCLALRHVHALNILHRDLKAPNIFLTARGVVKLGDFGVARALEASTGGACARTQIGTPHYLSPEICQDQPYGKKSDMWALGVVLYEMFALRVPFQAGNLPALANKIVSEDPPPIPDCYSADGCALVAQLLAKAPRQRPSVGQVLRGVYLQAHIAKLL 810
            M KY +++ELGRG FG A LV   A   ++ V+KE+ + H+   E++ A++EA+ L+ M H NIV+++ESF+   +L IVM YADGGDL++ +  R+   R+ F E E + +F Q+CLAL+HVH   ILHRDLK+ N+FLT +G+VK+GDFG+A+ L+++ G   ARTQIGTP+YLSPEICQD+PY +KSD+WA+G +LYEM ALRVPF+A  LPAL  KI++   P +P  YS++  ALV  +L K P++RP++ ++L   YL+  + + L
Sbjct:   80 MNKYTKVKELGRGGFGAAYLVNVKANPAQQYVLKEVKISHMGRAEQDVAKKEAEFLKTMRHPNIVTHVESFIHAGNLCIVMGYADGGDLSAKVKQRKQA-RKAFTEDEAINIFVQICLALKHVHDRRILHRDLKSQNVFLTRKGMVKVGDFGIAKELDSTVG--MARTQIGTPYYLSPEICQDKPYDRKSDIWAMGCLLYEMLALRVPFEARELPALVRKIMTAPTPAVPSRYSSEARALVNSMLQKNPQRRPTINELLSRPYLKDRMKRFL 348          
BLAST of jgi.p|Trimin1|154282 vs. uniprot
Match: A7RG20_NEMVE (Predicted protein n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7RG20_NEMVE)

HSP 1 Score: 260 bits (664), Expect = 2.680e-83
Identity = 139/271 (51.29%), Postives = 183/271 (67.53%), Query Frame = 1
Query:    1 MEKYRRIEELGRGAFGCATLVTN-GAGERCVVKEISLGHLAPREREAAEREAQLLRQMHHSNIVSYIESFVEDSSLYIVMDYADGGDLASAIAARRAPPRRPFAEGEVMRVFAQVCLALRHVHALNILHRDLKAPNIFLTARGVVKLGDFGVARALEASTGGACARTQIGTPHYLSPEICQDQPYGKKSDMWALGVVLYEMFALRVPFQAGNLPALANKIVSEDPPPIPDCYSADGCALVAQLLAKAPRQRPSVGQVLRGVYLQAHIAKLL 810
            ME+Y R++++G G+FG A LV     G+  V+KEI++  + PRERE + +E ++L Q+ H NIVSY ESF E  +LYIVMDY DGGDL   I  +R      F+E +VM  F Q+CL L+HVH   ILHRD+K+ NIFLT  G++K+GDFG+AR L ++     ART IGTP+YLSPEI +++PY  KSD+W+LG VLYEM  L+  F+AGN+  L  KI+    PPIP  YSAD   LVAQLL + P  RPSV  VL+  ++Q  I K L
Sbjct:    1 MERYVRVKKIGEGSFGKALLVKKRNDGKHYVIKEINICRMKPREREESRKEVKVLSQLKHPNIVSYQESFEESGNLYIVMDYCDGGDLYKKINGQRGIA---FSEDQVMDWFVQICLGLKHVHDRKILHRDIKSQNIFLTRHGIIKMGDFGIARVLHSTV--ELARTCIGTPYYLSPEIVENRPYNNKSDIWSLGCVLYEMLTLKHAFEAGNMKNLVLKIIRGSYPPIPLRYSADIRMLVAQLLKRNPHDRPSVNTVLKKNFIQKRIEKFL 266          
BLAST of jgi.p|Trimin1|154282 vs. uniprot
Match: C3YZN8_BRAFL (Protein kinase domain-containing protein (Fragment) n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3YZN8_BRAFL)

HSP 1 Score: 255 bits (652), Expect = 1.450e-81
Identity = 138/274 (50.36%), Postives = 184/274 (67.15%), Query Frame = 1
Query:    1 MEKYRRIEELGRGAFGCATLVTNGA-GERCVVKEISLGHLAPREREAAEREAQLLRQMHHSNIVSYIESFVEDSSLYIVMDYADGGDLASAIAARRAPPRRPFAEGEVMRVFAQVCLALRHVHALNILHRDLKAPNIFLTARGVVKLGDFGVARALEASTGGACARTQIGTPHYLSPEICQDQPYGKKSDMWALGVVLYEMFALRVPFQAGNLPALANKIVSEDPPPIPDCYSADGCALVAQLLAKAPRQRPSVGQVLRGVYLQAHIAKLLAHA 819
            MEKY++++ +G G+FG A LV N   G++ V+KEIS+  ++P+ER+ A RE  +L +M H+NIVSY ESF E  +LYIVMD+ DGGDL   I A+R      F E +VM  F Q+CLAL+HVH   ILHRD+K+ NIFL   G +KLGDFG+AR L  +     ART IGTP+YLSPE+C+++PY  KSD+WALG VLYEM  L+  F+AGN+  L  KI+    PP+   YS +   LVAQL  + PR RPS+  +LR  ++   I K L+ A
Sbjct:    1 MEKYQKLKRIGEGSFGKALLVRNKKDGKQYVIKEISITKMSPKERQEARREVTVLSKMKHTNIVSYQESFEEIGNLYIVMDFCDGGDLYQRINAQRGIL---FQEDQVMNWFVQLCLALKHVHDRKILHRDIKSQNIFLMRDGAIKLGDFGIARVLNNTM--ELARTCIGTPYYLSPEMCENRPYNNKSDIWALGCVLYEMCTLKHAFEAGNMKNLVLKIIRGSYPPVSPRYSYELRNLVAQLFKRNPRDRPSINSILRKNFISKRIEKFLSQA 269          
BLAST of jgi.p|Trimin1|154282 vs. uniprot
Match: V4C192_LOTGI (Protein kinase domain-containing protein n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4C192_LOTGI)

HSP 1 Score: 252 bits (644), Expect = 9.800e-80
Identity = 131/259 (50.58%), Postives = 176/259 (67.95%), Query Frame = 1
Query:    1 MEKYRRIEELGRGAFGCATLVTNGA-GERCVVKEISLGHLAPREREAAEREAQLLRQMHHSNIVSYIESFVEDSSLYIVMDYADGGDLASAIAARRAPPRRPFAEGEVMRVFAQVCLALRHVHALNILHRDLKAPNIFLTARGVVKLGDFGVARALEASTGGACARTQIGTPHYLSPEICQDQPYGKKSDMWALGVVLYEMFALRVPFQAGNLPALANKIVSEDPPPIPDCYSADGCALVAQLLAKAPRQRPSVGQVLR 774
            MEKY+RI ++G GAFG A LV     G  CV+KEISLG + P+ERE + +E  +L Q++H NIV+Y+ESF E  +LYI MDY  GGDL + I  +R        E ++   FAQ+CLA++H+H   ILHRD+K+ NIFLTA G VK+GDFG+A+ L  +     ART IGTP+YLSPE+ +++PY  KSD+W+LG VLYEM  L+  F+AGN+  L  KI+    PPIP  YS D   ++AQL  ++PR RPS+  +LR
Sbjct:    1 MEKYQRIRKIGEGAFGKAILVKQKQNGRECVIKEISLGRMGPKEREGSRKEVAVLSQLNHPNIVTYLESFEERGTLYICMDYCAGGDLYTKINQQRGAL---IHEDQIWNYFAQICLAIKHIHDRKILHRDIKSQNIFLTAEGRVKIGDFGIAKVLNNTM--ELARTCIGTPYYLSPELVENKPYNNKSDVWSLGCVLYEMTTLKHAFEAGNMKNLVLKIIRGVYPPIPPKYSYDLRGVIAQLFKRSPRDRPSINALLR 254          
BLAST of jgi.p|Trimin1|154282 vs. uniprot
Match: H2ZNH1_CIOSA (Protein kinase domain-containing protein n=1 Tax=Ciona savignyi TaxID=51511 RepID=H2ZNH1_CIOSA)

HSP 1 Score: 250 bits (638), Expect = 2.540e-79
Identity = 128/263 (48.67%), Postives = 176/263 (66.92%), Query Frame = 1
Query:    1 MEKYRRIEELGRGAFGCATLVT-NGAGERCVVKEISLGHLAPREREAAEREAQLLRQMHHSNIVSYIESFVEDSSLYIVMDYADGGDLASAIAARRAPPRRPFAEGEVMRVFAQVCLALRHVHALNILHRDLKAPNIFLTARGVVKLGDFGVARALEASTGGACARTQIGTPHYLSPEICQDQPYGKKSDMWALGVVLYEMFALRVPFQAGNLPALANKIVSEDPPPIPDCYSADGCALVAQLLAKAPRQRPSVGQVLRGVYL 786
            M+KY +++++G G+FG A LV  N +GE  VVKEI +  + P+ER  A +E  +L +M H NIV Y ESF E+  LYI+M+Y +GGDL + I  +R      F E +V+  F Q+CLAL+HVH   ILHRD+K  NIFLT  G +KLGDFG+AR L  +     ART IGTP+YLSPEIC+++PY  KSD+WALG V+YE   L+  F+AGN+  L  KI+    PP+P  YS +  +LV+QL  + PR+RPS+  +LR  ++
Sbjct:    1 MDKYTKVKKIGEGSFGTAILVKHNESGEHFVVKEIGISKMKPKERNEARKEVLVLSKMRHPNIVQYTESFEENGHLYIIMEYCEGGDLYALINKQRGVA---FPERQVLSWFVQICLALKHVHDRKILHRDIKTSNIFLTKSGTIKLGDFGIARVLNNTM--ELARTCIGTPYYLSPEICENKPYNNKSDVWALGCVVYETLTLKHAFEAGNMKNLVLKIIRGSYPPVPSRYSYELRSLVSQLFRRNPRERPSINSILRKPFI 258          
BLAST of jgi.p|Trimin1|154282 vs. uniprot
Match: R7U228_CAPTE (Protein kinase domain-containing protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7U228_CAPTE)

HSP 1 Score: 250 bits (638), Expect = 3.170e-79
Identity = 130/271 (47.97%), Postives = 184/271 (67.90%), Query Frame = 1
Query:    1 MEKYRRIEELGRGAFGCATLVTNGA-GERCVVKEISLGHLAPREREAAEREAQLLRQMHHSNIVSYIESFVEDSSLYIVMDYADGGDLASAIAARRAPPRRPFAEGEVMRVFAQVCLALRHVHALNILHRDLKAPNIFLTARGVVKLGDFGVARALEASTGGACARTQIGTPHYLSPEICQDQPYGKKSDMWALGVVLYEMFALRVPFQAGNLPALANKIVSEDPPPIPDCYSADGCALVAQLLAKAPRQRPSVGQVLRGVYLQAHIAKLL 810
            MEKY RI+++G G+FG A LV +   G++ VVKEI++  +  +ERE + +E  +L Q+ H N+V+Y ESF E  +LYIVMDY DGGDL   I A+R      F E +++  F Q CLA++H+H   ILHRD+K+ NIFLT  G++KLGDFG+++ L ++     ART IGTP+YLSPEIC+++PY  KSD+W+LG VLYE+  L+  F+AGN+  L  KI+    PP+P  Y+ +  +L+A L  ++PR RPS+  VLR   LQ+ I K L
Sbjct:    1 MEKYVRIKKIGEGSFGKALLVRSKENGKQMVVKEINMSRMQRKEREESRKEVAVLAQLAHPNVVAYKESFEEVGNLYIVMDYCDGGDLYGRINAQRGIL---FPEDQILDWFVQTCLAIKHIHDRKILHRDVKSQNIFLTKHGIIKLGDFGISKVLNSTV--ELARTCIGTPYYLSPEICENKPYNNKSDVWSLGCVLYELCTLKHAFEAGNMKNLVLKIIRGSYPPVPPRYTYELRSLIATLFKRSPRDRPSINSVLRKSILQSRIKKFL 266          
BLAST of jgi.p|Trimin1|154282 vs. uniprot
Match: A0A674PP72_TAKRU (Protein kinase domain-containing protein n=1 Tax=Takifugu rubripes TaxID=31033 RepID=A0A674PP72_TAKRU)

HSP 1 Score: 248 bits (634), Expect = 1.240e-78
Identity = 130/271 (47.97%), Postives = 181/271 (66.79%), Query Frame = 1
Query:    1 MEKYRRIEELGRGAFGCATLVTNGAGE-RCVVKEISLGHLAPREREAAEREAQLLRQMHHSNIVSYIESFVEDSSLYIVMDYADGGDLASAIAARRAPPRRPFAEGEVMRVFAQVCLALRHVHALNILHRDLKAPNIFLTARGVVKLGDFGVARALEASTGGACARTQIGTPHYLSPEICQDQPYGKKSDMWALGVVLYEMFALRVPFQAGNLPALANKIVSEDPPPIPDCYSADGCALVAQLLAKAPRQRPSVGQVLRGVYLQAHIAKLL 810
            MEKY +++++G G+FG A LV +   E + V+KEIS+  ++ +ER+ + +E  +L  M H NIV Y ESF E   LYIVMDY +GGDL   I +++      F+E +++  F Q+CLAL+HVH   ILHRD+K+ NIFLT  G V+LGDFG+AR L ++     ART IGTP+YLSPEIC+++PY  KSD+WALG VLYEM  L+  F+AGN+  L  KI+    PP+   YS D  +L+AQL  ++PR+RPSV  +L   +L   I + L
Sbjct:    1 MEKYEKVKKIGEGSFGKAILVKSKEDESQYVIKEISISRMSSQERQESRKEVAVLANMRHPNIVQYKESFEEGGCLYIVMDYCEGGDLFKKINSQKGVL---FSEDQILNWFVQICLALKHVHDRKILHRDIKSQNIFLTKNGTVQLGDFGIARVLNSTV--ELARTWIGTPYYLSPEICENKPYNNKSDIWALGCVLYEMCTLKHAFEAGNMKNLVLKIIRGSYPPVSVHYSQDLRSLLAQLFKRSPRERPSVNSILDKPFLAGRIERFL 266          
BLAST of jgi.p|Trimin1|154282 vs. uniprot
Match: A0A8C5AIN4_GADMO (NIMA related kinase 1 n=1 Tax=Gadus morhua TaxID=8049 RepID=A0A8C5AIN4_GADMO)

HSP 1 Score: 249 bits (637), Expect = 1.390e-78
Identity = 134/271 (49.45%), Postives = 179/271 (66.05%), Query Frame = 1
Query:    1 MEKYRRIEELGRGAFGCATLVTNGA-GERCVVKEISLGHLAPREREAAEREAQLLRQMHHSNIVSYIESFVEDSSLYIVMDYADGGDLASAIAARRAPPRRPFAEGEVMRVFAQVCLALRHVHALNILHRDLKAPNIFLTARGVVKLGDFGVARALEASTGGACARTQIGTPHYLSPEICQDQPYGKKSDMWALGVVLYEMFALRVPFQAGNLPALANKIVSEDPPPIPDCYSADGCALVAQLLAKAPRQRPSVGQVLRGVYLQAHIAKLL 810
            MEKY +++++G G+FG A LV +   G + V+KEI +  ++ RER+ + +E  +L  M H NIV Y ESF E   LYIVMDY +GGDL   I ++R  P   F E +V+  F Q+CLAL+HVH   ILHRD+K+ NIFLT  G V+LGDFG+AR L ++     ART IGTP+YLSPEIC+++PY  KSD+WALG VLYEM  L+  F+AGN+  L  KI+    PP+   YS D  +L+  L  + PR+RPSVG VL+  +L   I K L
Sbjct:    3 MEKYEKLKKIGEGSFGKAILVKSKEDGHQYVIKEIGISRMSSRERQESRKEVAVLANMSHPNIVQYKESFEEAGCLYIVMDYCEGGDLFRKINSQRGGP---FPEEQVLDWFVQICLALKHVHDRKILHRDIKSQNIFLTKHGAVQLGDFGIARVLNSTV--ELARTCIGTPYYLSPEICENKPYNNKSDIWALGCVLYEMCTLKHAFEAGNMKNLVLKIIRGSYPPVSLHYSQDLRSLLGLLFRRNPRERPSVGTVLQKPFLSCRIHKFL 268          
BLAST of jgi.p|Trimin1|154282 vs. uniprot
Match: Q8BSB6_MOUSE (Protein kinase domain-containing protein n=1 Tax=Mus musculus TaxID=10090 RepID=Q8BSB6_MOUSE)

HSP 1 Score: 249 bits (635), Expect = 1.490e-78
Identity = 132/271 (48.71%), Postives = 180/271 (66.42%), Query Frame = 1
Query:    1 MEKYRRIEELGRGAFGCATLVTNGA-GERCVVKEISLGHLAPREREAAEREAQLLRQMHHSNIVSYIESFVEDSSLYIVMDYADGGDLASAIAARRAPPRRPFAEGEVMRVFAQVCLALRHVHALNILHRDLKAPNIFLTARGVVKLGDFGVARALEASTGGACARTQIGTPHYLSPEICQDQPYGKKSDMWALGVVLYEMFALRVPFQAGNLPALANKIVSEDPPPIPDCYSADGCALVAQLLAKAPRQRPSVGQVLRGVYLQAHIAKLL 810
            MEKY R++++G G+FG A LV +   G   V+KEI++  ++ +ER+ + RE  +L  M H NIV Y ESF E+ SLYIVMDY +GGDL   I A++      F E +++  F Q+CLAL+HVH   ILHRD+K+ NIFLT  G V+LGDFG+AR L ++     ART IGTP+YLSPEIC+++PY  KSD+WALG VLYE+  L+  F+AGN+  L  KI+S   PP+   YS D  +L++QL  + PR RPSV  +L   ++   I K L
Sbjct:    1 MEKYVRLQKIGEGSFGKAVLVKSTEDGRHYVIKEINISRMSDKERQESRREVAVLANMKHPNIVQYKESFEENGSLYIVMDYCEGGDLFKRINAQKGAL---FQEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTV--ELARTCIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGNMKNLVLKIISGSFPPVSPHYSYDLRSLLSQLFKRNPRDRPSVNSILEKGFIAKRIEKFL 266          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|154282 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YUU2_9STRA1.590e-197100.00Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A7S1G2Z5_9STRA3.690e-8649.63Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A7RG20_NEMVE2.680e-8351.29Predicted protein n=1 Tax=Nematostella vectensis T... [more]
C3YZN8_BRAFL1.450e-8150.36Protein kinase domain-containing protein (Fragment... [more]
V4C192_LOTGI9.800e-8050.58Protein kinase domain-containing protein n=1 Tax=L... [more]
H2ZNH1_CIOSA2.540e-7948.67Protein kinase domain-containing protein n=1 Tax=C... [more]
R7U228_CAPTE3.170e-7947.97Protein kinase domain-containing protein n=1 Tax=C... [more]
A0A674PP72_TAKRU1.240e-7847.97Protein kinase domain-containing protein n=1 Tax=T... [more]
A0A8C5AIN4_GADMO1.390e-7849.45NIMA related kinase 1 n=1 Tax=Gadus morhua TaxID=8... [more]
Q8BSB6_MOUSE1.490e-7848.71Protein kinase domain-containing protein n=1 Tax=M... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_4contigContig_4:1763200..1765694 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|154282|gw1.4.366.1
BRITEko00000,ko01000,ko01001,ko03036,ko03400
KEGG koko:K08857,ko:K20877
EC2.7.11.1
GOsGO:0008150,GO:0030100,GO:0032501,GO:0032879,GO:0042303,GO:0045807,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0060627,GO:0065007
Preferred namenekl-2
Descriptionserine threonine-protein kinase
COG categoryT
Max annot lvl33208|Metazoa
EggNOG OGsKOG0589@1|root,KOG0589@2759|Eukaryota,38C6Q@33154|Opisthokonta,3BE0Z@33208|Metazoa
Evalue4.39e-84
Seed ortholog45351.EDO49822
Hectar predicted targeting categoryother localisation
TranscriptId154604
TrackFilteredModels1
ProteinId154282
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|154282gene_1741Tribonema minus UTEX_B_3156 geneContig_4 1763200..1765694 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|154282Trimin1|154282|gw1.4.366.1Tribonema minus UTEX_B_3156 polypeptideContig_4 1763200..1765694 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1741_4exon_1741_4Tribonema minus UTEX_B_3156 exonContig_4 1763200..1763341 -
exon_1741_3exon_1741_3Tribonema minus UTEX_B_3156 exonContig_4 1763704..1763996 -
exon_1741_2exon_1741_2Tribonema minus UTEX_B_3156 exonContig_4 1764332..1764509 -
exon_1741_1exon_1741_1Tribonema minus UTEX_B_3156 exonContig_4 1765477..1765694 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1741CDS_1741Tribonema minus UTEX_B_3156 CDSContig_4 1765477..1765694 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1741 ID=mRNA_1741|Name=jgi.p|Trimin1|154282|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=831bp|location=Sequence derived from alignment at Contig_4:1763200..1765694- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGAAGTACAGGCGCATAGAAGAGCTGGGGCGGGGAGCTTTTGGCTG
CGCCACTCTGGTCACCAATGGCGCAGGGGAGCGCTGTGTGGTCAAGGAGA
TCAGTCTGGGGCACTTGGCGCCGAGAGAGCGGGAAGCTGCCGAGAGGGAG
GCGCAGCTGCTCCGCCAGATGCATCACAGTAATATCGTTAGCTACATCGA
GAGCTTCGTAGAAGATAGCTCGCTGTACATTGTGATGGACTACGCGGACG
GCGGCGACCTCGCGAGCGCCATCGCAGCGCGCCGCGCGCCTCCGCGCCGC
CCCTTTGCCGAGGGCGAGGTGATGCGCGTCTTTGCGCAGGTCTGCCTCGC
GCTGCGCCACGTGCACGCGCTCAACATACTCCACCGCGACCTCAAGGCGC
CCAACATCTTCCTCACCGCGCGCGGCGTCGTCAAGCTTGGCGACTTTGGC
GTCGCGCGCGCGCTGGAGGCGTCCACCGGTGGCGCCTGCGCGCGCACGCA
GATCGGCACCCCCCACTACCTGTCGCCCGAGATCTGCCAGGACCAGCCAT
ACGGCAAGAAGAGCGACATGTGGGCGCTGGGCGTGGTGCTGTACGAGATG
TTTGCGCTGCGCGTGCCGTTCCAGGCGGGCAACCTGCCCGCGCTCGCCAA
CAAGATCGTCTCGGAGGACCCCCCGCCGATACCGGACTGCTACAGCGCTG
ACGGCTGCGCGCTCGTCGCGCAGCTGCTGGCCAAGGCGCCGCGCCAGCGC
CCCTCCGTGGGCCAGGTCCTGCGCGGCGTGTACCTGCAGGCACACATCGC
CAAGCTCCTTGCGCACGCCGCGCGCACGGGG
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protein sequence of jgi.p|Trimin1|154282

>Trimin1|154282|gw1.4.366.1 ID=Trimin1|154282|gw1.4.366.1|Name=jgi.p|Trimin1|154282|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=277bp
MEKYRRIEELGRGAFGCATLVTNGAGERCVVKEISLGHLAPREREAAERE
AQLLRQMHHSNIVSYIESFVEDSSLYIVMDYADGGDLASAIAARRAPPRR
PFAEGEVMRVFAQVCLALRHVHALNILHRDLKAPNIFLTARGVVKLGDFG
VARALEASTGGACARTQIGTPHYLSPEICQDQPYGKKSDMWALGVVLYEM
FALRVPFQAGNLPALANKIVSEDPPPIPDCYSADGCALVAQLLAKAPRQR
PSVGQVLRGVYLQAHIAKLLAHAARTG
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mRNA from alignment at Contig_4:1763200..1765694-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1741 ID=mRNA_1741|Name=jgi.p|Trimin1|154282|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2495bp|location=Sequence derived from alignment at Contig_4:1763200..1765694- (Tribonema minus UTEX_B_3156 )
ATGGAGAAGTACAGGCGCATAGAAGAGCTGGGGCGGGGAGCTTTTGGCTG CGCCACTCTGGTCACCAATGGCGCAGGGGAGCGCTGTGTGGTCAAGGAGA TCAGTCTGGGGCACTTGGCGCCGAGAGAGCGGGAAGCTGCCGAGAGGGAG GCGCAGCTGCTCCGCCAGATGCATCACAGTAATATCGTTAGCTACATCGA GAGCTTCGTAGAAGATAGGTGCGTGCTGAGGCGGTGTGTCCGGGCTGGTC GTCTTCACAAAAATAGGTATTCGCACTTGCAGCTCGGCGAGTGCAGCAAT CTGCTGCACGAAGCTTCTTTTCCATGGCATGAGCTCCTGCTTACAATAAC ACGGAAAGCGCACAAGTTCATTGCCAACATGCCCAGCAGCAGCTGCTGAG CAGCTCGTAAAGCTACAGTTGATTACGCAGAAATTCAATTCATGACATTA GAGGCGAGCCGTGCAACCCATGCACAACAGAGCTTGACAGCGCATCATCA GTATACACCCATGCACCAGCAGCATTGCCAATTCGAAGACCCAACTGCGT GACAGAGGATTAGTATGGGGGCATCGTATTGTAAACAGGTCACGGCGCTG CCGTGGTGTTTGACGGGTCAACCACGACAGCCTGTGTACAAATTCAGTGC CTCCGAGTCAAGCATTGACACTATCGGCACTGACGCCTCATGACAGATGC GCACATAGCTGTTGAGAGATCTTGCCTGACCCCAACAAGAGCATCCTGCG CTTCACAAGCGCATCGCCTACATGGGTGCATTTACGTCAATGTGCACTAC TCAGGCAGATGTCAGCTGCGTCACACATTGCCAAGAGCCTGCGCACTGGC ACCGATGTTGTCCTTCTGATATGCTGGAGGCCATGTTTGAGGCTCGAGTC TGCTGTGTGCTGCAGCTGCCCTTGGCCCTTTTTCTGGTTCTATATAGCAC CTGGCCACCGCCCCACTCTTCCCATGCACGCATGCACACATGCGCAGAAC ATGCAAAAGCCACAAGAACAGGGAATGCGCGTCACAACTCTCCACACGAT GTTGTGACTTGCGTGCGGTGCGCACCCCAAGCGCCATGCGCGCATGGGAG CAATCACCTCCATTGTTATCGTGCACAGCTCTCCTGACACGATACCCCCC CCAACTCCTTCCCCCTGTAAACAACGCCGCCGCAGCTCGCTGTACATTGT GATGGACTACGCGGACGGCGGCGACCTCGCGAGCGCCATCGCAGCGCGCC GCGCGCCTCCGCGCCGCCCCTTTGCCGAGGGCGAGGTGATGCGCGTCTTT GCGCAGGTCTGCCTCGCGCTGCGCCACGTGCACGCGCTCAACATACTCCA CCGCGACCTCAAGGTGAGTCTGGAATAACATAGTGGGTCGTTGGGTGTTT TGGGATGTCCTTCCGGGCTTAGACTGCGCTGGTGTCCGCTTTGATGCTGT TGCGCCACCTCTCCGATATGCCTGCGAAGTCGGTAATCCTGATCAGCAGT CGCCTCGGTACACGCAGCAGGTTCTGGCTTGAATGATCTTGCGTGACGCA CTTGCACGCGATCAGCTATACGAGCGCACAGGCCGTGGCTGTCACTGCCA CGTGCAGAACCCACCTGCTCATTCGTTCAGTGCTCGTCGTGCCTGTCGTG CATTCACATGGGGGGCGCCCAACCCCCCGCTCCACGCCATCACCACAGGC GCCCAACATCTTCCTCACCGCGCGCGGCGTCGTCAAGCTTGGCGACTTTG GCGTCGCGCGCGCGCTGGAGGCGTCCACCGGTGGCGCCTGCGCGCGCACG CAGATCGGCACCCCCCACTACCTGTCGCCCGAGATCTGCCAGGACCAGCC ATACGGCAAGAAGAGCGACATGTGGGCGCTGGGCGTGGTGCTGTACGAGA TGTTTGCGCTGCGCGTGCCGTTCCAGGCGGGCAACCTGCCCGCGCTCGCC AACAAGATCGTCTCGGAGGACCCCCCGCCGATACCGGACTGGTGCGTTGC ATTCGTGCAGCGCGCAGCACAGGGTGTGGCGAGGTGTCGCATGATGCATG CCAGTGTGTTGGCGGAGGCGCTGGTGGGGTGCTCGTTCTGGACAAGCAAT TCATTTCCCTGTCCTCAATGTGTGGCATCGGTGGCTTCTCGCCTGCAAAG CAGATGCATGCATGCGCACGCGGTGACCTGAGCGGAGGTGTCTGGACCCT CGTGAAACACCGCCCCGCGCCATGCGTTTGCCGCATCACCACCATGCACA TACCGCTCTGCCGACCCCCGCCCGCCCCCCCCCCCCCACTCTCATCACCT CTCGTGCTGCACTGCACTGCGCACGCCGCCGCCGCTGCGCGCCGCCTCCG CAGCTACAGCGCTGACGGCTGCGCGCTCGTCGCGCAGCTGCTGGCCAAGG CGCCGCGCCAGCGCCCCTCCGTGGGCCAGGTCCTGCGCGGCGTGTACCTG CAGGCACACATCGCCAAGCTCCTTGCGCACGCCGCGCGCACGGGG
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Coding sequence (CDS) from alignment at Contig_4:1763200..1765694-

>mRNA_1741 ID=mRNA_1741|Name=jgi.p|Trimin1|154282|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=831bp|location=Sequence derived from alignment at Contig_4:1763200..1765694- (Tribonema minus UTEX_B_3156 )
ATGGAGAAGTACAGGCGCATAGAAGAGCTGGGGCGGGGAGCTTTTGGCTG
CGCCACTCTGGTCACCAATGGCGCAGGGGAGCGCTGTGTGGTCAAGGAGA
TCAGTCTGGGGCACTTGGCGCCGAGAGAGCGGGAAGCTGCCGAGAGGGAG
GCGCAGCTGCTCCGCCAGATGCATCACAGTAATATCGTTAGCTACATCGA
GAGCTTCGTAGAAGATAGCTCGCTGTACATTGTGATGGACTACGCGGACG
GCGGCGACCTCGCGAGCGCCATCGCAGCGCGCCGCGCGCCTCCGCGCCGC
CCCTTTGCCGAGGGCGAGGTGATGCGCGTCTTTGCGCAGGTCTGCCTCGC
GCTGCGCCACGTGCACGCGCTCAACATACTCCACCGCGACCTCAAGGCGC
CCAACATCTTCCTCACCGCGCGCGGCGTCGTCAAGCTTGGCGACTTTGGC
GTCGCGCGCGCGCTGGAGGCGTCCACCGGTGGCGCCTGCGCGCGCACGCA
GATCGGCACCCCCCACTACCTGTCGCCCGAGATCTGCCAGGACCAGCCAT
ACGGCAAGAAGAGCGACATGTGGGCGCTGGGCGTGGTGCTGTACGAGATG
TTTGCGCTGCGCGTGCCGTTCCAGGCGGGCAACCTGCCCGCGCTCGCCAA
CAAGATCGTCTCGGAGGACCCCCCGCCGATACCGGACTGCTACAGCGCTG
ACGGCTGCGCGCTCGTCGCGCAGCTGCTGGCCAAGGCGCCGCGCCAGCGC
CCCTCCGTGGGCCAGGTCCTGCGCGGCGTGTACCTGCAGGCACACATCGC
CAAGCTCCTTGCGCACGCCGCGCGCACGGGG
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