mRNA_17320 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|139259 vs. uniprot
Match: A0A835ZBF8_9STRA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBF8_9STRA) HSP 1 Score: 332 bits (851), Expect = 2.910e-115 Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 1 Query: 1 EFKICVLGDKGVGKTCLVLRFIEGYFSQNQQSTIGAFFLTKSLPVNGVLCKLQIWDTAGQERFRAMAPMYYRNAAAAIVCCDITDEESFDKMKDWVEEIKMNVPVGQQGLAIVLALNKTDLEERRVVSRARAEEFAASIGAAVVETSARENWGVARLFECACERV 495 EFKICVLGDKGVGKTCLVLRFIEGYFSQNQQSTIGAFFLTKSLPVNGVLCKLQIWDTAGQERFRAMAPMYYRNAAAAIVCCDITDEESFDKMKDWVEEIKMNVPVGQQGLAIVLALNKTDLEERRVVSRARAEEFAASIGAAVVETSARENWGVARLFECACERV Sbjct: 1 EFKICVLGDKGVGKTCLVLRFIEGYFSQNQQSTIGAFFLTKSLPVNGVLCKLQIWDTAGQERFRAMAPMYYRNAAAAIVCCDITDEESFDKMKDWVEEIKMNVPVGQQGLAIVLALNKTDLEERRVVSRARAEEFAASIGAAVVETSARENWGVARLFECACERV 165
BLAST of jgi.p|Trimin1|139259 vs. uniprot
Match: A0A7S2XTR6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XTR6_9STRA) HSP 1 Score: 240 bits (613), Expect = 1.270e-78 Identity = 122/166 (73.49%), Postives = 137/166 (82.53%), Query Frame = 1 Query: 1 EFKICVLGDKGVGKTCLVLRFIEGYFSQNQQSTIGAFFLTKSLPVNG-VLCKLQIWDTAGQERFRAMAPMYYRNAAAAIVCCDITDEESFDKMKDWVEEIKMNVPVGQQGLAIVLALNKTDLEERRVVSRARAEEFAASIGAAVVETSARENWGVARLFECACERV 495 EFK+ VLGDKGVGKTCLVLRFIEGYFS QQSTIGAFFLTK + G V CK+QIWDTAGQERFRAMAPMYYRNAAAAIVC DITDE+SF KMKDWVEE+K NVP G+ L + +A NKTDLE RVVSRARAE+++A+I A ETSA+ENWGV +FE E+V Sbjct: 12 EFKVVVLGDKGVGKTCLVLRFIEGYFSPKQQSTIGAFFLTKKIQTEGGVNCKMQIWDTAGQERFRAMAPMYYRNAAAAIVCFDITDEDSFTKMKDWVEELKTNVPEGK--LVLAIACNKTDLESNRVVSRARAEQYSAAIKAIYCETSAKENWGVNEIFEKVSEKV 175
BLAST of jgi.p|Trimin1|139259 vs. uniprot
Match: D8LS40_ECTSI (Rab50, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LS40_ECTSI) HSP 1 Score: 236 bits (601), Expect = 2.790e-76 Identity = 114/166 (68.67%), Postives = 133/166 (80.12%), Query Frame = 1 Query: 1 EFKICVLGDKGVGKTCLVLRFIEGYFSQNQQSTIGAFFLTKSLPV-NGVLCKLQIWDTAGQERFRAMAPMYYRNAAAAIVCCDITDEESFDKMKDWVEEIKMNVPVGQQGLAIVLALNKTDLEERRVVSRARAEEFAASIGAAVVETSARENWGVARLFECACERV 495 EFK+ VLGDKGVGKTCLVLRFIEGYF+ QQSTIGAFFLTK + +G +CK+QIWDTAGQERFRAMAP+YYRNAA A+VC DI DEESF KMKDWVEE++ NVP G+ L + +A KTD+E +RVVSRARAE FA +G + ETSA+ENWGV LF C+R Sbjct: 12 EFKVVVLGDKGVGKTCLVLRFIEGYFAPKQQSTIGAFFLTKQITATDGTICKMQIWDTAGQERFRAMAPLYYRNAAVAVVCFDIMDEESFQKMKDWVEELRTNVPEGK--LVLAIACTKTDMESKRVVSRARAEHFATEVGGIICETSAKENWGVNELFARVCDRA 175
BLAST of jgi.p|Trimin1|139259 vs. uniprot
Match: A0A7S3Y4J2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y4J2_HETAK) HSP 1 Score: 235 bits (599), Expect = 7.290e-76 Identity = 118/166 (71.08%), Postives = 135/166 (81.33%), Query Frame = 1 Query: 1 EFKICVLGDKGVGKTCLVLRFIEGYFSQNQQSTIGAFFLTKSLPV-NGVLCKLQIWDTAGQERFRAMAPMYYRNAAAAIVCCDITDEESFDKMKDWVEEIKMNVPVGQQGLAIVLALNKTDLEERRVVSRARAEEFAASIGAAVVETSARENWGVARLFECACERV 495 EFK+ VLGDKGVGK+CLVLRFIEGYFS QQSTIGAFFL+K++ +G CK+QIWDTAGQERFRAMA MYYRNAAAAIVC DITDEESF KMKDWV+E+K NVP G+ L + +A KTDLE +R VSR RAE++A SIGA ETSA+ENWGV +FE A RV Sbjct: 13 EFKVVVLGDKGVGKSCLVLRFIEGYFSPKQQSTIGAFFLSKTIEAADGTACKMQIWDTAGQERFRAMASMYYRNAAAAIVCFDITDEESFSKMKDWVQELKANVPEGR--LVLAIAATKTDLEAQRAVSRGRAEQYAQSIGALCCETSAKENWGVTEVFEAAAARV 176
BLAST of jgi.p|Trimin1|139259 vs. uniprot
Match: F0XY01_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XY01_AURAN) HSP 1 Score: 215 bits (548), Expect = 2.680e-68 Identity = 112/166 (67.47%), Postives = 131/166 (78.92%), Query Frame = 1 Query: 1 EFKICVLGDKGVGKTCLVLRFIEGYFSQNQQSTIGAFFLTKSL-PVNGVLCKLQIWDTAGQERFRAMAPMYYRNAAAAIVCCDITDEESFDKMKDWVEEIKMNVPVGQQGLAIVLALNKTDLEERRVVSRARAEEFAASIGAAVVETSARENWGVARLFECACERV 495 EFKI +LGD+GVGKTCLVLRFIEG ++ QQSTIGAFFLTK + G CK+QIWDTAGQERFRAMAPMYYRNAAAAIVC D+TDE +F+ MKDWVEE+K NV + L I +A NK DL+ R+V SRARAE+FA SI A V++TSA+EN+GVA LF E V Sbjct: 10 EFKIVLLGDRGVGKTCLVLRFIEGLYNSRQQSTIGAFFLTKKIVTAQGDACKIQIWDTAGQERFRAMAPMYYRNAAAAIVCFDVTDESTFNTMKDWVEELKTNVV--DKNLVIAIACNKADLDTRQV-SRARAEQFARSISAIVLDTSAKENFGVAELFAAVSEHV 172
BLAST of jgi.p|Trimin1|139259 vs. uniprot
Match: A0A7S3NK22_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NK22_9STRA) HSP 1 Score: 215 bits (547), Expect = 3.800e-68 Identity = 111/166 (66.87%), Postives = 132/166 (79.52%), Query Frame = 1 Query: 1 EFKICVLGDKGVGKTCLVLRFIEGYFSQNQQSTIGAFFLTKSLPV-NGVLCKLQIWDTAGQERFRAMAPMYYRNAAAAIVCCDITDEESFDKMKDWVEEIKMNVPVGQQGLAIVLALNKTDLEERRVVSRARAEEFAASIGAAVVETSARENWGVARLFECACERV 495 EFKI +LGD+GVGKTCLVLRFIEG ++ QQSTIGAFFLTK + NG CK+QIWDTAGQERFRAMAPMYYRNAAAAIVC D+TDE +F+ MKDWVEE+K NV + L I +A NK DL+ R+V SRARAE FA SI A +++TSA+EN+GV+ LF E+V Sbjct: 15 EFKIVLLGDRGVGKTCLVLRFIEGLYNSRQQSTIGAFFLTKKIVTSNGDACKIQIWDTAGQERFRAMAPMYYRNAAAAIVCFDVTDESTFNTMKDWVEELKTNVV--DKNLVIAIACNKADLDTRQV-SRARAESFARSIDAIILDTSAKENFGVSELFTAVSEQV 177
BLAST of jgi.p|Trimin1|139259 vs. uniprot
Match: A0A7S2BGJ2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BGJ2_9STRA) HSP 1 Score: 199 bits (507), Expect = 6.130e-62 Identity = 104/156 (66.67%), Postives = 122/156 (78.21%), Query Frame = 1 Query: 31 GVGKTCLVLRFIEGYFSQNQQSTIGAFFLTKSLPV-NGVLCKLQIWDTAGQERFRAMAPMYYRNAAAAIVCCDITDEESFDKMKDWVEEIKMNVPVGQQGLAIVLALNKTDLEERRVVSRARAEEFAASIGAAVVETSARENWGVARLFECACERV 495 GVGKTCLVLRFIEG F+Q QQSTIGAFFLTK + + +G +CK+QIWDTAGQERFRAMAPMYYRNAAAAIVC DITDE SF MKDWV+E++ N + L + +A NK DL RVVSR RAE FA+SI A +++TSA+EN GV LF+ ERV Sbjct: 17 GVGKTCLVLRFIEGTFTQKQQSTIGAFFLTKKVQLEDGSMCKIQIWDTAGQERFRAMAPMYYRNAAAAIVCFDITDENSFSTMKDWVQELRRNCQ--DRDLILAIACNKADLSSTRVVSRERAESFASSIKAILMDTSAKENEGVNELFQKVTERV 170
BLAST of jgi.p|Trimin1|139259 vs. uniprot
Match: A0A7S3ZPM5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZPM5_9STRA) HSP 1 Score: 196 bits (497), Expect = 1.260e-60 Identity = 102/167 (61.08%), Postives = 126/167 (75.45%), Query Frame = 1 Query: 1 EFKICVLGDKGVGKTCLVLRFIEGYFSQNQQSTIGAFFLTKSLPV-NGVLCKLQIWDTAGQERFRAMAPMYYRNAAAAIVCCDITDEESFDKMKDWVEEIKMNVPVGQQGLAIVLALNKTDLEERRVVSRARAEEFAASIG-AAVVETSARENWGVARLFECACERV 495 EFK+ +LGD+GVGKTCLVLRFIEG ++ QQSTIGAFFLTK + G CK+QIWDTAGQERFRAMAPMYYRNAAAA+VC D TD+ +F M+ WVEE++ NV + L I +A+ K+DL+E R +R +AEEFA+SI A V+ETSA+ + GV LF ERV Sbjct: 15 EFKVVLLGDRGVGKTCLVLRFIEGLYNARQQSTIGAFFLTKKIKTARGDDCKIQIWDTAGQERFRAMAPMYYRNAAAAVVCFDGTDQRTFQTMRTWVEELRANVD--DKKLVIAIAITKSDLDENRAETRRKAEEFASSINDALVLETSAKNDVGVRELFATVAERV 179
BLAST of jgi.p|Trimin1|139259 vs. uniprot
Match: A0A8J5XZ05_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XZ05_DIALT) HSP 1 Score: 172 bits (437), Expect = 9.060e-52 Identity = 89/165 (53.94%), Postives = 116/165 (70.30%), Query Frame = 1 Query: 1 EFKICVLGDKGVGKTCLVLRFIEGYFSQNQQSTIGAFFLTKSLPVNGVLCKLQIWDTAGQERFRAMAPMYYRNAAAAIVCCDITDEESFDKMKDWVEEIKMNVPVGQQGLAIVLALNKTDLEERRVVSRARAEEFAASIGAAVVETSARENWGVARLFECACERV 495 + K+ VLG GVGKTC+ RF++ F+ STIGA FL K + VNG LQIWDTAGQERFR+MAP+YYR A AAI+ DIT++ SFDKMK+WV E++ NV ++ L + +A NK DL E+RVV +A ++AA IGA +VETSA+EN GV LF +R+ Sbjct: 6 DAKVVVLGSSGVGKTCIACRFVKNQFAPYIASTIGASFLVKEVTVNGQKITLQIWDTAGQERFRSMAPLYYRGAVAAILVFDITNDVSFDKMKEWVRELQANV---EEPLVLAIACNKADLREQRVVQFEQAAQYAAKIGAIIVETSAKENVGVDALFMDVSKRL 167
BLAST of jgi.p|Trimin1|139259 vs. uniprot
Match: A0A0M0LQE4_9EUKA (Gtp-binding protein rab11 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0LQE4_9EUKA) HSP 1 Score: 169 bits (429), Expect = 2.130e-50 Identity = 86/165 (52.12%), Postives = 114/165 (69.09%), Query Frame = 1 Query: 1 EFKICVLGDKGVGKTCLVLRFIEGYFSQNQQSTIGAFFLTKSLPVNGVLCKLQIWDTAGQERFRAMAPMYYRNAAAAIVCCDITDEESFDKMKDWVEEIKMNVPVGQQGLAIVLALNKTDLEERRVVSRARAEEFAASIGAAVVETSARENWGVARLFECACERV 495 +FK+ +LG GVGKTCL LRF++ F STIGA FL K L N LQIWDTAGQERFR+MAP+YYR A AAI+ ITDE SF+K+K+WV E++ NV + L + +A NK DL ++R+VS A+++A+SIGA + ETSA+ N GV++LF R+ Sbjct: 13 DFKVVILGASGVGKTCLGLRFVKDQFVTYTASTIGASFLVKELVFNNQKVTLQIWDTAGQERFRSMAPLYYRGAVAAILVFSITDEASFEKLKEWVRELQSNV---DEPLVLAIACNKADLADQRIVSMETAQQYASSIGALIYETSAKSNTGVSQLFNEVARRL 174 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|139259 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_17320 ID=mRNA_17320|Name=jgi.p|Trimin1|139259|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=495bp|location=Sequence derived from alignment at Contig_205:152675..155645+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GAGTTCAAGATCTGCGTGCTGGGCGACAAGGGAGTTGGGAAGACATGCCTback to top protein sequence of jgi.p|Trimin1|139259 >Trimin1|139259|gw1.205.3.1 ID=Trimin1|139259|gw1.205.3.1|Name=jgi.p|Trimin1|139259|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=165bp EFKICVLGDKGVGKTCLVLRFIEGYFSQNQQSTIGAFFLTKSLPVNGVLCback to top mRNA from alignment at Contig_205:152675..155645+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_17320 ID=mRNA_17320|Name=jgi.p|Trimin1|139259|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2971bp|location=Sequence derived from alignment at Contig_205:152675..155645+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_205:152675..155645+ >mRNA_17320 ID=mRNA_17320|Name=jgi.p|Trimin1|139259|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=495bp|location=Sequence derived from alignment at Contig_205:152675..155645+ (Tribonema minus UTEX_B_3156 )back to top |