mRNA_17270 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|150170 vs. uniprot
Match: A0A835Z333_9STRA (NLI interacting factor (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z333_9STRA) HSP 1 Score: 393 bits (1010), Expect = 1.620e-138 Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 1
Query: 1 LTVVLDMDECLLHSKFHGAGAVSTTYRQEEDRPETVGEVNSFWLALDDGVAQVNIRPGLHEFLEQLAQMCDVVVFTAAMPDYAGPVLDRIDPTGKLISRRLYRNSCRQVRGVFLKDLSALGSAFATNPGRCVLLDNNPCSFLCQPTNGILVTSFYDDARDTALACVMQLVRLLESVPDVRPILRDMFRLEALLKE 585
LTVVLDMDECLLHSKFHGAGAVSTTYRQEEDRPETVGEVNSFWLALDDGVAQVNIRPGLHEFLEQLAQMCDVVVFTAAMPDYAGPVLDRIDPTGKLISRRLYRNSCRQVRGVFLKDLSALGSAFATNPGRCVLLDNNPCSFLCQPTNGILVTSFYDDARDTALACVMQLVRLLESVPDVRPILRDMFRLEALLKE
Sbjct: 1 LTVVLDMDECLLHSKFHGAGAVSTTYRQEEDRPETVGEVNSFWLALDDGVAQVNIRPGLHEFLEQLAQMCDVVVFTAAMPDYAGPVLDRIDPTGKLISRRLYRNSCRQVRGVFLKDLSALGSAFATNPGRCVLLDNNPCSFLCQPTNGILVTSFYDDARDTALACVMQLVRLLESVPDVRPILRDMFRLEALLKE 195
BLAST of jgi.p|Trimin1|150170 vs. uniprot
Match: A0A836C7A9_9STRA (NLI interacting factor-like phosphatase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7A9_9STRA) HSP 1 Score: 323 bits (829), Expect = 1.470e-109 Identity = 156/195 (80.00%), Postives = 176/195 (90.26%), Query Frame = 1
Query: 1 LTVVLDMDECLLHSKFHGAGAVSTTYRQEEDRPETVGEVNSFWLALDDGVAQVNIRPGLHEFLEQLAQMCDVVVFTAAMPDYAGPVLDRIDPTGKLISRRLYRNSCRQVRGVFLKDLSALGSAFATNPGRCVLLDNNPCSFLCQPTNGILVTSFYDDARDTALACVMQLVRLLESVPDVRPILRDMFRLEALLKE 585
LTV+LDMDECLLHSKFHG G++ YRQ+E+RPE +GEVNSF + LDDGVAQVNIRPGLH+FLE+LA+ CDVVVFTAAMPDYAGPVLD++DPTG+LIS+RLYR+SCRQVRG FLKDLS LG F +PGRCVLLDNNPCSFLCQPTNGILVTSFYDDA DTALA V+QLV+ LE PDVRPILRDMFRLE+LL+E
Sbjct: 29 LTVILDMDECLLHSKFHGLGSID--YRQQEERPEDIGEVNSFCIPLDDGVAQVNIRPGLHDFLEELAKTCDVVVFTAAMPDYAGPVLDKLDPTGRLISKRLYRSSCRQVRGAFLKDLSVLGPVFDKHPGRCVLLDNNPCSFLCQPTNGILVTSFYDDAEDTALASVLQLVQHLEHAPDVRPILRDMFRLESLLRE 221
BLAST of jgi.p|Trimin1|150170 vs. uniprot
Match: D7FM26_ECTSI (Putative nuclear LIM interactor-interacting protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM26_ECTSI) HSP 1 Score: 270 bits (691), Expect = 4.640e-88 Identity = 139/196 (70.92%), Postives = 156/196 (79.59%), Query Frame = 1
Query: 1 LTVVLDMDECLLHSKFHGAGAVSTTYRQEEDRPETVGEVNSFWLALDDG-VAQVNIRPGLHEFLEQLAQMCDVVVFTAAMPDYAGPVLDRIDPTGKLISRRLYRNSCRQVRGVFLKDLSALGSAFATNPGRCVLLDNNPCSFLCQPTNGILVTSFYDDARDTALACVMQLVRLLESVPDVRPILRDMFRLEALLKE 585
+TVVLDMDECLLHSKFHG GA S YRQ E+RP+ V EVNSFW+ALDDG AQVN RPGL FLE LA+ + +VFTAAMPDYAGPVLD IDP G L RRLYR+SCRQV+G FLKDLS LG +T+ R VL+DNNP SF+CQPTNGILV SFYDD DTALA VMQL+R L+ DVRPIL+DMFRL+ LL E
Sbjct: 1 MTVVLDMDECLLHSKFHGPGAASEAYRQLEERPDAVNEVNSFWVALDDGDTAQVNKRPGLDPFLEALARDYNTIVFTAAMPDYAGPVLDYIDPKGTLFHRRLYRSSCRQVKGAFLKDLSVLGVE-STDMSRTVLVDNNPLSFICQPTNGILVASFYDDPNDTALASVMQLIRHLDQAGDVRPILKDMFRLDTLLGE 195
BLAST of jgi.p|Trimin1|150170 vs. uniprot
Match: A0A6H5L173_9PHAE (FCP1 homology domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L173_9PHAE) HSP 1 Score: 270 bits (689), Expect = 4.290e-86 Identity = 139/196 (70.92%), Postives = 155/196 (79.08%), Query Frame = 1
Query: 1 LTVVLDMDECLLHSKFHGAGAVSTTYRQEEDRPETVGEVNSFWLALDDG-VAQVNIRPGLHEFLEQLAQMCDVVVFTAAMPDYAGPVLDRIDPTGKLISRRLYRNSCRQVRGVFLKDLSALGSAFATNPGRCVLLDNNPCSFLCQPTNGILVTSFYDDARDTALACVMQLVRLLESVPDVRPILRDMFRLEALLKE 585
+TVVLDMDECLLHSKFHG GA S YRQ E+RP V EVNSFW+ALDDG AQVN RPGL FLE LA+ + +VFTAAMPDYAGPVLD IDP G L RRLYR+SCRQV+G FLKDLS LG +T+ R VL+DNNP SF+CQPTNGILV SFYDD DTALA VMQL+R L+ DVRPIL+DMFRL+ LL E
Sbjct: 127 MTVVLDMDECLLHSKFHGPGAASEAYRQLEERPNAVNEVNSFWVALDDGDTAQVNKRPGLDPFLEALARDYNTIVFTAAMPDYAGPVLDYIDPKGTLFHRRLYRSSCRQVKGAFLKDLSVLGVE-STDMSRTVLVDNNPLSFICQPTNGILVASFYDDPNDTALASVMQLIRHLDQAGDVRPILKDMFRLDTLLGE 321
BLAST of jgi.p|Trimin1|150170 vs. uniprot
Match: A0A836CB86_9STRA (Putative CTD small phosphatase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB86_9STRA) HSP 1 Score: 174 bits (442), Expect = 9.620e-52 Identity = 106/199 (53.27%), Postives = 130/199 (65.33%), Query Frame = 1
Query: 1 LTVVLDMDECLLHSKFHGAGAVSTTYRQEEDRPETVGEVNSFWLALDDGVAQV--NIRPGLHEFLEQLAQMCDVVVFTAAMPDYAGPVLDRIDPTGKLISRRLYRNSCRQVRG-VFLKDLSA-LGSAFATNPGRCVLLDNNPCSFLCQPTNGILVTSFYDDARDTALACVMQLVRLLESVPDVRPILRDMFRLEALLKE 585
LTVVLD+DECL+HS F YRQ E RPE + V+S L L GV V N RPGL +FLEQL+ VVVFTA +YA VLD IDP G RLYR SCRQ RG ++LKDL +G A R VL+DN+P SF+CQP+NGILV+S+YDD D AL+ V++L+R L++ DVRP L +F LE +LKE
Sbjct: 18 LTVVLDLDECLVHSVFPNGDK----YRQSEARPENINLVDSMHLVLG-GVEPVVVNRRPGLTKFLEQLSVDYHVVVFTAGRKEYAEEVLDAIDPQGTFFHHRLYRCSCRQARGNIYLKDLDRPVGEALE----RTVLVDNSPLSFICQPSNGILVSSWYDDPHDNALSSVLKLIRHLDACDDVRPTLTALFGLEPVLKE 207
BLAST of jgi.p|Trimin1|150170 vs. uniprot
Match: H3GXJ8_PHYRM (FCP1 homology domain-containing protein n=12 Tax=Phytophthora TaxID=4783 RepID=H3GXJ8_PHYRM) HSP 1 Score: 174 bits (441), Expect = 2.200e-51 Identity = 98/197 (49.75%), Postives = 126/197 (63.96%), Query Frame = 1
Query: 1 LTVVLDMDECLLHSKFHGAGAVSTTYRQEEDRPETVGE-VNSFWLALDDGV-AQVNIRPGLHEFLEQLAQMCDVVVFTAAMPDYAGPVLDRIDPTGKLISRRLYRNSCRQVRGVFLKDLSALGSAFATNPGRCVLLDNNPCSFLCQPTNGILVTSFYDDARDTALACVMQLVRLLESVPDVRPILRDMFRLEALLKE 585
L +VLDMDECL+HSKF YRQ E RPE + + +SF + +DDG A VN RPGL FLE+ A+ DV VFTA + Y P+LD +DP G L + R +R SC+Q +G+FLKDLS + + R +L+DNNP SFL QP+NGI V SFYDDA D L + +++ L+ V DVRP L +FRL LL E
Sbjct: 41 LALVLDMDECLVHSKFQN----EVEYRQSEFRPEQLEDFADSFEIVMDDGERAVVNKRPGLDRFLEEAAKHYDVYVFTAGLEAYGKPILDELDPKGNLFAGRFFRESCQQRKGMFLKDLSVVRGG---DLSRVILVDNNPVSFLMQPSNGIPVPSFYDDANDRTLESLSKVLASLQEVEDVRPRLHQLFRLADLLAE 230
BLAST of jgi.p|Trimin1|150170 vs. uniprot
Match: A0A662Y5D0_9STRA (FCP1 homology domain-containing protein n=4 Tax=Peronosporaceae TaxID=4777 RepID=A0A662Y5D0_9STRA) HSP 1 Score: 172 bits (435), Expect = 1.820e-50 Identity = 98/197 (49.75%), Postives = 125/197 (63.45%), Query Frame = 1
Query: 1 LTVVLDMDECLLHSKFHGAGAVSTTYRQEEDRPETVGEV-NSFWLALDDGV-AQVNIRPGLHEFLEQLAQMCDVVVFTAAMPDYAGPVLDRIDPTGKLISRRLYRNSCRQVRGVFLKDLSALGSAFATNPGRCVLLDNNPCSFLCQPTNGILVTSFYDDARDTALACVMQLVRLLESVPDVRPILRDMFRLEALLKE 585
L +VLDMDECL+HSKF YRQ E RPE + +SF + +DDG A VN RPGL FLE+ A+ DV VFTA + Y P+LD +DP G L + R +R SC+Q +G+FLKDLS + T+ R +L+DNNP SFL QP+NGI V SFYDD D L + +++ L+ V DVRP L +FRL LL E
Sbjct: 43 LALVLDMDECLVHSKFQN----EVEYRQSEYRPEELEAYGDSFEIVMDDGERAVVNKRPGLDRFLEEAAKHFDVYVFTAGLEAYGKPILDELDPKGNLFAGRFFRASCQQRKGMFLKDLSVV----RTDLSRVILVDNNPVSFLLQPSNGIPVPSFYDDVNDRTLDSLTKVLASLQEVDDVRPRLHQLFRLADLLAE 231
BLAST of jgi.p|Trimin1|150170 vs. uniprot
Match: A0A3M6VFT3_9STRA (FCP1 homology domain-containing protein n=9 Tax=Peronosporaceae TaxID=4777 RepID=A0A3M6VFT3_9STRA) HSP 1 Score: 170 bits (431), Expect = 7.100e-50 Identity = 94/197 (47.72%), Postives = 126/197 (63.96%), Query Frame = 1
Query: 1 LTVVLDMDECLLHSKFHGAGAVSTTYRQEEDRPETVGE-VNSFWLALDDGV-AQVNIRPGLHEFLEQLAQMCDVVVFTAAMPDYAGPVLDRIDPTGKLISRRLYRNSCRQVRGVFLKDLSALGSAFATNPGRCVLLDNNPCSFLCQPTNGILVTSFYDDARDTALACVMQLVRLLESVPDVRPILRDMFRLEALLKE 585
+ +VLDMDECL+HSKF YRQ E RPE + E ++SF + ++DG A VN RPGL FLE+ A+ DV VFTA + Y P+LD +DP G L + +R SC+Q +G+FLKDLS + + R +L+DNNP SFL QP+NGI V SFYDD +D L + +++ ++ V DVRP L +FRL LL E
Sbjct: 41 IALVLDMDECLVHSKFQN----EVEYRQNEYRPEQLEEYIDSFEIVMEDGERAVVNKRPGLDRFLEEAAKHYDVYVFTAGLEAYGKPILDVLDPKGNLFAGHFFRESCKQRKGMFLKDLSVIRDG---DLSRVILVDNNPVSFLMQPSNGIPVPSFYDDTKDRTLESLSKVLASMQEVEDVRPRLHQLFRLADLLAE 230
BLAST of jgi.p|Trimin1|150170 vs. uniprot
Match: A0A8K1CRD5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CRD5_PYTOL) HSP 1 Score: 166 bits (420), Expect = 3.240e-48 Identity = 94/197 (47.72%), Postives = 128/197 (64.97%), Query Frame = 1
Query: 1 LTVVLDMDECLLHSKFHGAGAVSTTYRQEEDRPETVGEV-NSFWLALDDGV-AQVNIRPGLHEFLEQLAQMCDVVVFTAAMPDYAGPVLDRIDPTGKLISRRLYRNSCRQVRGVFLKDLSALGSAFATNPGRCVLLDNNPCSFLCQPTNGILVTSFYDDARDTALACVMQLVRLLESVPDVRPILRDMFRLEALLKE 585
+ +VLDMDECL+HSKF+ A YRQ+E RPE++ E +SF + ++DG A V RPGL FLE+ ++ D+ VFTA + Y P+LD +DP G + + R +R SC+ +G+FLKDL + S + R +L+DNNP SFL QP+NGI V SFYDDA D L +M+++ L V DVRP L +FRL LL E
Sbjct: 41 IALVLDMDECLVHSKFYNEMA---EYRQDEYRPESLQEYEDSFDIEMEDGERAIVYKRPGLDRFLEEASKHFDLYVFTAGLEAYGKPILDELDPKGTIFAGRFFRESCQMRKGMFLKDLRVVRSDMS----RVILVDNNPVSFLMQPSNGIPVPSFYDDAADRTLDSLMKVLMSLTEVEDVRPRLHQLFRLADLLSE 230
BLAST of jgi.p|Trimin1|150170 vs. uniprot
Match: A0A4D9D0R5_9STRA (FCP1 homology domain-containing protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D0R5_9STRA) HSP 1 Score: 169 bits (428), Expect = 7.450e-48 Identity = 100/219 (45.66%), Postives = 130/219 (59.36%), Query Frame = 1
Query: 1 LTVVLDMDECLLHSKFH-----------------GAGAVSTTYRQEEDRPETVGEVNS-----FWLALDDGV-AQVNIRPGLHEFLEQLAQMCDVVVFTAAMPDYAGPVLDRIDPTGKLISRRLYRNSCRQVRGVFLKDLSALGSAFA-TNPGRCVLLDNNPCSFLCQPTNGILVTSFYDDARDTALACVMQLV-RLLESVPDVRPILRDMFRLEALLK 582
LTVVLDMDECLLHS+F + S Y+ + D E +G+V FWL L++G +VN+RPG+ FL++L+ +V VFTAA YA PVLDR+DPTG L+ R YR +CR V G +LKDL + + + R VL+DNNP SF+ QP NGILV SFYDD D L V +L+ R L + DVRP L D+F+L A L+
Sbjct: 125 LTVVLDMDECLLHSRFEEDMRDERGRELAHQLLPNGDSESFHYQHQADIGEALGDVRHRSVDYFWLELEEGERVRVNLRPGVEAFLQRLSDEYNVFVFTAATETYARPVLDRLDPTGSLLDGRFYRPACRHVHGTYLKDLRRIQAGLGKADLSRVVLVDNNPLSFVPQPENGILVPSFYDDVEDRTLEAVGELIDRRLAPLDDVRPFLGDLFQLRAQLQ 343 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|150170 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_17270 ID=mRNA_17270|Name=jgi.p|Trimin1|150170|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=585bp|location=Sequence derived from alignment at Contig_195:126598..128073+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. TTAACTGTAGTGCTGGATATGGACGAGTGCCTGCTACATTCGAAGTTCCAback to top protein sequence of jgi.p|Trimin1|150170 >Trimin1|150170|gw1.195.34.1 ID=Trimin1|150170|gw1.195.34.1|Name=jgi.p|Trimin1|150170|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=195bp LTVVLDMDECLLHSKFHGAGAVSTTYRQEEDRPETVGEVNSFWLALDDGVback to top mRNA from alignment at Contig_195:126598..128073+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_17270 ID=mRNA_17270|Name=jgi.p|Trimin1|150170|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1476bp|location=Sequence derived from alignment at Contig_195:126598..128073+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_195:126598..128073+ >mRNA_17270 ID=mRNA_17270|Name=jgi.p|Trimin1|150170|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=585bp|location=Sequence derived from alignment at Contig_195:126598..128073+ (Tribonema minus UTEX_B_3156 )back to top |