mRNA_17222 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|140513 vs. uniprot
Match: A0A835Z3X0_9STRA (Accelerated cell death 1 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3X0_9STRA) HSP 1 Score: 168 bits (426), Expect = 3.150e-53 Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1 Query: 1 VELLGEPLVLWQDSTKQWRAALDRCPHRWAPLSEGFVDPEQKRLTCAYHGWEFEGDGRGARIQQAEGTAEETALRSRR 234 VELLGEPLVLWQDSTKQWRAALDRCPHRWAPLSEGFVDPEQKRLTCAYHGWEFEGDGRGARIQQAEGTAEETALRSRR Sbjct: 1 VELLGEPLVLWQDSTKQWRAALDRCPHRWAPLSEGFVDPEQKRLTCAYHGWEFEGDGRGARIQQAEGTAEETALRSRR 78
BLAST of jgi.p|Trimin1|140513 vs. uniprot
Match: A0A835YYS4_9STRA (Pheophorbide a oxygenase, putative chloroplast n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYS4_9STRA) HSP 1 Score: 104 bits (259), Expect = 2.250e-24 Identity = 45/65 (69.23%), Postives = 50/65 (76.92%), Query Frame = 1 Query: 1 VELLGEPLVLWQDSTKQWRAALDRCPHRWAPLSEGFVDPEQKRLTCAYHGWEFEGDGRGARIQQA 195 VELLGE LVLW+DS KQWRAA+DRCPHR APLSEG + P+ L C YHGWEF+GDG I QA Sbjct: 99 VELLGEALVLWRDSNKQWRAAVDRCPHRMAPLSEGIIHPKTGNLMCTYHGWEFDGDGTCTNIPQA 163
BLAST of jgi.p|Trimin1|140513 vs. uniprot
Match: D7FSH5_ECTSI (Pheophorbide a oxygenase, putative chloroplast n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSH5_ECTSI) HSP 1 Score: 98.6 bits (244), Expect = 2.430e-22 Identity = 47/79 (59.49%), Postives = 55/79 (69.62%), Query Frame = 1 Query: 1 VELLGEPLVLWQDSTKQ-WRAALDRCPHRWAPLSEGFVDPEQKRLTCAYHGWEFEGDGRGARIQQAEGTAEETALRSRR 234 V+L+GE LV+W+D W+A DRCPHRWAPLSEG VD E RL C YHGWEFEGDG+ I QA + ETA S+R Sbjct: 66 VQLMGEGLVVWKDPKDGGWKAFADRCPHRWAPLSEGRVDQESGRLQCIYHGWEFEGDGKCGSIPQATPGSRETAQNSKR 144
BLAST of jgi.p|Trimin1|140513 vs. uniprot
Match: A0A6H5KID3_9PHAE (Rieske domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KID3_9PHAE) HSP 1 Score: 94.0 bits (232), Expect = 1.150e-20 Identity = 45/79 (56.96%), Postives = 53/79 (67.09%), Query Frame = 1 Query: 1 VELLGEPLVLWQDSTKQ-WRAALDRCPHRWAPLSEGFVDPEQKRLTCAYHGWEFEGDGRGARIQQAEGTAEETALRSRR 234 V+LLGE LV+W+D W+A D+CPHRWAPLSEG V+ E RL C YHGWEFEGDG+ I QA A + A S R Sbjct: 147 VKLLGESLVVWKDPKDDGWKAFTDKCPHRWAPLSEGRVNQETGRLHCIYHGWEFEGDGKCGSIPQANPDARDIAQNSNR 225
BLAST of jgi.p|Trimin1|140513 vs. uniprot
Match: A0A2K3DX92_CHLRE (Rieske domain-containing protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DX92_CHLRE) HSP 1 Score: 91.3 bits (225), Expect = 1.030e-19 Identity = 39/64 (60.94%), Postives = 45/64 (70.31%), Query Frame = 1 Query: 1 VELLGEPLVLWQDSTKQWRAALDRCPHRWAPLSEGFVDPEQKRLTCAYHGWEFEGDGRGARIQQ 192 V +LG+PLVLW T+ WR D CPHR APLSEG V+ RL CAYHGWEF+GDGR R+ Q Sbjct: 121 VTILGQPLVLWHHKTEGWRVMRDMCPHRLAPLSEGRVEEGGTRLACAYHGWEFDGDGRCTRVPQ 184
BLAST of jgi.p|Trimin1|140513 vs. uniprot
Match: A0A835WMS9_9CHLO (Rieske domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WMS9_9CHLO) HSP 1 Score: 90.1 bits (222), Expect = 2.620e-19 Identity = 39/64 (60.94%), Postives = 44/64 (68.75%), Query Frame = 1 Query: 1 VELLGEPLVLWQDSTKQWRAALDRCPHRWAPLSEGFVDPEQKRLTCAYHGWEFEGDGRGARIQQ 192 V LG+PLVLW T+ WR D CPHR APLSEG V+ RL CAYHGWEF+GDGR R+ Q Sbjct: 129 VTTLGQPLVLWHHKTEGWRVMRDMCPHRLAPLSEGRVEEGGTRLACAYHGWEFDGDGRCTRVPQ 192
BLAST of jgi.p|Trimin1|140513 vs. uniprot
Match: A0A835YPR5_9STRA (Rieske domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPR5_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 6.680e-19 Identity = 42/45 (93.33%), Postives = 42/45 (93.33%), Query Frame = 1 Query: 100 EGFVDPEQKRLTCAYHGWEFEGDGRGARIQQAEGTAEETALRSRR 234 EGFVDPE KRL CAYHGWEFEGDGRGARI QAEGTAEETALRSRR Sbjct: 315 EGFVDPEPKRLVCAYHGWEFEGDGRGARIPQAEGTAEETALRSRR 359
BLAST of jgi.p|Trimin1|140513 vs. uniprot
Match: A0A835TPC0_CHLIN (Rieske domain-containing protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835TPC0_CHLIN) HSP 1 Score: 87.0 bits (214), Expect = 3.170e-18 Identity = 36/62 (58.06%), Postives = 43/62 (69.35%), Query Frame = 1 Query: 7 LLGEPLVLWQDSTKQWRAALDRCPHRWAPLSEGFVDPEQKRLTCAYHGWEFEGDGRGARIQQ 192 +LG+PLVLW T+ WR D CPHR APLSEG ++ RL CAYHGWEF+GDG R+ Q Sbjct: 115 ILGQPLVLWHHQTEGWRVMRDMCPHRLAPLSEGRLEEGGTRLACAYHGWEFDGDGHCTRVPQ 176
BLAST of jgi.p|Trimin1|140513 vs. uniprot
Match: D8TQK3_VOLCA (Rieske domain-containing protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TQK3_VOLCA) HSP 1 Score: 84.7 bits (208), Expect = 6.820e-18 Identity = 42/78 (53.85%), Postives = 51/78 (65.38%), Query Frame = 1 Query: 1 VELLGEPLVLWQDSTKQWRAALDRCPHRWAPLSEGFVDPEQKRLTCAYHGWEFEGDGRGARIQQAEGTAEETALRSRR 234 V LLG +V+W+D+ +WR DRCPHR APLSEG V+P+ L+CAYHGW F+G G RI QA A E A S R Sbjct: 41 VTLLGITMVVWRDAGGRWRVFRDRCPHRLAPLSEGRVEPDGS-LSCAYHGWRFDGSGACRRIPQAVDAASEAAACSSR 117
BLAST of jgi.p|Trimin1|140513 vs. uniprot
Match: A0A1Y1HNZ9_KLENI (Pheophorbide a oxygenase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HNZ9_KLENI) HSP 1 Score: 85.1 bits (209), Expect = 1.490e-17 Identity = 44/83 (53.01%), Postives = 51/83 (61.45%), Query Frame = 1 Query: 1 VELLGEPLVLWQDSTKQ-------WRAALDRCPHRWAPLSEGFVDPEQKRLTCAYHGWEFEGDGRGARIQQAEGTAEETALRS 228 V +LG+PLVLW D K+ WRA LD CPHR APLSEG +D E RL C+YHGW F+GD R I QAE + A S Sbjct: 179 VTILGKPLVLWWDRNKREKGQPGGWRAFLDMCPHRLAPLSEGRID-EAGRLQCSYHGWSFDGDARCQSIPQAEKEGPQAAAHS 260 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|140513 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_17222 ID=mRNA_17222|Name=jgi.p|Trimin1|140513|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=234bp|location=Sequence derived from alignment at Contig_199:164193..164609- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GTGGAGCTGCTGGGGGAGCCGCTAGTGCTGTGGCAAGACAGCACCAAGCAback to top protein sequence of jgi.p|Trimin1|140513 >Trimin1|140513|gw1.199.5.1 ID=Trimin1|140513|gw1.199.5.1|Name=jgi.p|Trimin1|140513|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=78bp VELLGEPLVLWQDSTKQWRAALDRCPHRWAPLSEGFVDPEQKRLTCAYHGback to top mRNA from alignment at Contig_199:164193..164609- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_17222 ID=mRNA_17222|Name=jgi.p|Trimin1|140513|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=417bp|location=Sequence derived from alignment at Contig_199:164193..164609- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_199:164193..164609- >mRNA_17222 ID=mRNA_17222|Name=jgi.p|Trimin1|140513|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=234bp|location=Sequence derived from alignment at Contig_199:164193..164609- (Tribonema minus UTEX_B_3156 )back to top |