mRNA_17222 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|140513
Unique NamemRNA_17222
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|140513 vs. uniprot
Match: A0A835Z3X0_9STRA (Accelerated cell death 1 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3X0_9STRA)

HSP 1 Score: 168 bits (426), Expect = 3.150e-53
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1
Query:    1 VELLGEPLVLWQDSTKQWRAALDRCPHRWAPLSEGFVDPEQKRLTCAYHGWEFEGDGRGARIQQAEGTAEETALRSRR 234
            VELLGEPLVLWQDSTKQWRAALDRCPHRWAPLSEGFVDPEQKRLTCAYHGWEFEGDGRGARIQQAEGTAEETALRSRR
Sbjct:    1 VELLGEPLVLWQDSTKQWRAALDRCPHRWAPLSEGFVDPEQKRLTCAYHGWEFEGDGRGARIQQAEGTAEETALRSRR 78          
BLAST of jgi.p|Trimin1|140513 vs. uniprot
Match: A0A835YYS4_9STRA (Pheophorbide a oxygenase, putative chloroplast n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYS4_9STRA)

HSP 1 Score: 104 bits (259), Expect = 2.250e-24
Identity = 45/65 (69.23%), Postives = 50/65 (76.92%), Query Frame = 1
Query:    1 VELLGEPLVLWQDSTKQWRAALDRCPHRWAPLSEGFVDPEQKRLTCAYHGWEFEGDGRGARIQQA 195
            VELLGE LVLW+DS KQWRAA+DRCPHR APLSEG + P+   L C YHGWEF+GDG    I QA
Sbjct:   99 VELLGEALVLWRDSNKQWRAAVDRCPHRMAPLSEGIIHPKTGNLMCTYHGWEFDGDGTCTNIPQA 163          
BLAST of jgi.p|Trimin1|140513 vs. uniprot
Match: D7FSH5_ECTSI (Pheophorbide a oxygenase, putative chloroplast n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSH5_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 2.430e-22
Identity = 47/79 (59.49%), Postives = 55/79 (69.62%), Query Frame = 1
Query:    1 VELLGEPLVLWQDSTKQ-WRAALDRCPHRWAPLSEGFVDPEQKRLTCAYHGWEFEGDGRGARIQQAEGTAEETALRSRR 234
            V+L+GE LV+W+D     W+A  DRCPHRWAPLSEG VD E  RL C YHGWEFEGDG+   I QA   + ETA  S+R
Sbjct:   66 VQLMGEGLVVWKDPKDGGWKAFADRCPHRWAPLSEGRVDQESGRLQCIYHGWEFEGDGKCGSIPQATPGSRETAQNSKR 144          
BLAST of jgi.p|Trimin1|140513 vs. uniprot
Match: A0A6H5KID3_9PHAE (Rieske domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KID3_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.150e-20
Identity = 45/79 (56.96%), Postives = 53/79 (67.09%), Query Frame = 1
Query:    1 VELLGEPLVLWQDSTKQ-WRAALDRCPHRWAPLSEGFVDPEQKRLTCAYHGWEFEGDGRGARIQQAEGTAEETALRSRR 234
            V+LLGE LV+W+D     W+A  D+CPHRWAPLSEG V+ E  RL C YHGWEFEGDG+   I QA   A + A  S R
Sbjct:  147 VKLLGESLVVWKDPKDDGWKAFTDKCPHRWAPLSEGRVNQETGRLHCIYHGWEFEGDGKCGSIPQANPDARDIAQNSNR 225          
BLAST of jgi.p|Trimin1|140513 vs. uniprot
Match: A0A2K3DX92_CHLRE (Rieske domain-containing protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DX92_CHLRE)

HSP 1 Score: 91.3 bits (225), Expect = 1.030e-19
Identity = 39/64 (60.94%), Postives = 45/64 (70.31%), Query Frame = 1
Query:    1 VELLGEPLVLWQDSTKQWRAALDRCPHRWAPLSEGFVDPEQKRLTCAYHGWEFEGDGRGARIQQ 192
            V +LG+PLVLW   T+ WR   D CPHR APLSEG V+    RL CAYHGWEF+GDGR  R+ Q
Sbjct:  121 VTILGQPLVLWHHKTEGWRVMRDMCPHRLAPLSEGRVEEGGTRLACAYHGWEFDGDGRCTRVPQ 184          
BLAST of jgi.p|Trimin1|140513 vs. uniprot
Match: A0A835WMS9_9CHLO (Rieske domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WMS9_9CHLO)

HSP 1 Score: 90.1 bits (222), Expect = 2.620e-19
Identity = 39/64 (60.94%), Postives = 44/64 (68.75%), Query Frame = 1
Query:    1 VELLGEPLVLWQDSTKQWRAALDRCPHRWAPLSEGFVDPEQKRLTCAYHGWEFEGDGRGARIQQ 192
            V  LG+PLVLW   T+ WR   D CPHR APLSEG V+    RL CAYHGWEF+GDGR  R+ Q
Sbjct:  129 VTTLGQPLVLWHHKTEGWRVMRDMCPHRLAPLSEGRVEEGGTRLACAYHGWEFDGDGRCTRVPQ 192          
BLAST of jgi.p|Trimin1|140513 vs. uniprot
Match: A0A835YPR5_9STRA (Rieske domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPR5_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 6.680e-19
Identity = 42/45 (93.33%), Postives = 42/45 (93.33%), Query Frame = 1
Query:  100 EGFVDPEQKRLTCAYHGWEFEGDGRGARIQQAEGTAEETALRSRR 234
            EGFVDPE KRL CAYHGWEFEGDGRGARI QAEGTAEETALRSRR
Sbjct:  315 EGFVDPEPKRLVCAYHGWEFEGDGRGARIPQAEGTAEETALRSRR 359          
BLAST of jgi.p|Trimin1|140513 vs. uniprot
Match: A0A835TPC0_CHLIN (Rieske domain-containing protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835TPC0_CHLIN)

HSP 1 Score: 87.0 bits (214), Expect = 3.170e-18
Identity = 36/62 (58.06%), Postives = 43/62 (69.35%), Query Frame = 1
Query:    7 LLGEPLVLWQDSTKQWRAALDRCPHRWAPLSEGFVDPEQKRLTCAYHGWEFEGDGRGARIQQ 192
            +LG+PLVLW   T+ WR   D CPHR APLSEG ++    RL CAYHGWEF+GDG   R+ Q
Sbjct:  115 ILGQPLVLWHHQTEGWRVMRDMCPHRLAPLSEGRLEEGGTRLACAYHGWEFDGDGHCTRVPQ 176          
BLAST of jgi.p|Trimin1|140513 vs. uniprot
Match: D8TQK3_VOLCA (Rieske domain-containing protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TQK3_VOLCA)

HSP 1 Score: 84.7 bits (208), Expect = 6.820e-18
Identity = 42/78 (53.85%), Postives = 51/78 (65.38%), Query Frame = 1
Query:    1 VELLGEPLVLWQDSTKQWRAALDRCPHRWAPLSEGFVDPEQKRLTCAYHGWEFEGDGRGARIQQAEGTAEETALRSRR 234
            V LLG  +V+W+D+  +WR   DRCPHR APLSEG V+P+   L+CAYHGW F+G G   RI QA   A E A  S R
Sbjct:   41 VTLLGITMVVWRDAGGRWRVFRDRCPHRLAPLSEGRVEPDGS-LSCAYHGWRFDGSGACRRIPQAVDAASEAAACSSR 117          
BLAST of jgi.p|Trimin1|140513 vs. uniprot
Match: A0A1Y1HNZ9_KLENI (Pheophorbide a oxygenase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HNZ9_KLENI)

HSP 1 Score: 85.1 bits (209), Expect = 1.490e-17
Identity = 44/83 (53.01%), Postives = 51/83 (61.45%), Query Frame = 1
Query:    1 VELLGEPLVLWQDSTKQ-------WRAALDRCPHRWAPLSEGFVDPEQKRLTCAYHGWEFEGDGRGARIQQAEGTAEETALRS 228
            V +LG+PLVLW D  K+       WRA LD CPHR APLSEG +D E  RL C+YHGW F+GD R   I QAE    + A  S
Sbjct:  179 VTILGKPLVLWWDRNKREKGQPGGWRAFLDMCPHRLAPLSEGRID-EAGRLQCSYHGWSFDGDARCQSIPQAEKEGPQAAAHS 260          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|140513 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z3X0_9STRA3.150e-53100.00Accelerated cell death 1 (Fragment) n=1 Tax=Tribon... [more]
A0A835YYS4_9STRA2.250e-2469.23Pheophorbide a oxygenase, putative chloroplast n=1... [more]
D7FSH5_ECTSI2.430e-2259.49Pheophorbide a oxygenase, putative chloroplast n=1... [more]
A0A6H5KID3_9PHAE1.150e-2056.96Rieske domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A2K3DX92_CHLRE1.030e-1960.94Rieske domain-containing protein n=2 Tax=Chlamydom... [more]
A0A835WMS9_9CHLO2.620e-1960.94Rieske domain-containing protein n=1 Tax=Chlamydom... [more]
A0A835YPR5_9STRA6.680e-1993.33Rieske domain-containing protein n=2 Tax=Tribonema... [more]
A0A835TPC0_CHLIN3.170e-1858.06Rieske domain-containing protein n=1 Tax=Chlamydom... [more]
D8TQK3_VOLCA6.820e-1853.85Rieske domain-containing protein n=1 Tax=Volvox ca... [more]
A0A1Y1HNZ9_KLENI1.490e-1753.01Pheophorbide a oxygenase n=1 Tax=Klebsormidium nit... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_199contigContig_199:164193..164609 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|140513|gw1.199.5.1
BRITEko00000,ko00001,ko01000
KEGG rclassRC03394
KEGG ReactionR08921
KEGG Pathwayko00860,ko01110,map00860,map01110
KEGG koko:K13071
EC1.14.15.17
GOsGO:0000003,GO:0002376,GO:0003006,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006787,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0007275,GO:0008150,GO:0008152,GO:0008219,GO:0009056,GO:0009507,GO:0009526,GO:0009528,GO:0009534,GO:0009536,GO:0009579,GO:0009605,GO:0009607,GO:0009617,GO:0009706,GO:0009791,GO:0009814,GO:0009816,GO:0009908,GO:0009941,GO:0009987,GO:0010154,GO:0015994,GO:0015996,GO:0016020,GO:0016491,GO:0016730,GO:0019439,GO:0019866,GO:0022414,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0031976,GO:0031984,GO:0032441,GO:0032501,GO:0032502,GO:0033013,GO:0033015,GO:0034641,GO:0042170,GO:0042440,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044248,GO:0044270,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045087,GO:0046149,GO:0046483,GO:0046700,GO:0048037,GO:0048367,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0051186,GO:0051187,GO:0051536,GO:0051540,GO:0051704,GO:0051707,GO:0055114,GO:0061458,GO:0071704,GO:0090567,GO:0098542,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575
Preferred namePAO
Descriptionpheophorbide a oxygenase activity
COG categoryP
Max annot lvl2759|Eukaryota
EggNOG OGsCOG4638@1|root,2QQ8U@2759|Eukaryota
Evalue3.98e-23
Seed ortholog2880.D7FSH5
Hectar predicted targeting categoryother localisation
TranscriptId140835
TrackFilteredModels1
ProteinId140513
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|140513gene_17222Tribonema minus UTEX_B_3156 geneContig_199 164193..164609 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|140513Trimin1|140513|gw1.199.5.1Tribonema minus UTEX_B_3156 polypeptideContig_199 164193..164609 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17222_2exon_17222_2Tribonema minus UTEX_B_3156 exonContig_199 164193..164355 -
exon_17222_1exon_17222_1Tribonema minus UTEX_B_3156 exonContig_199 164539..164609 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17222CDS_17222Tribonema minus UTEX_B_3156 CDSContig_199 164539..164609 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17222 ID=mRNA_17222|Name=jgi.p|Trimin1|140513|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=234bp|location=Sequence derived from alignment at Contig_199:164193..164609- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTGGAGCTGCTGGGGGAGCCGCTAGTGCTGTGGCAAGACAGCACCAAGCA
ATGGAGAGCAGCACTGGACAGATGCCCTCACCGCTGGGCCCCGCTCAGCG
AGGGATTTGTCGATCCTGAACAGAAACGGCTTACGTGCGCCTACCATGGT
TGGGAGTTTGAGGGCGACGGCAGGGGCGCTAGGATTCAGCAGGCAGAGGG
GACTGCTGAAGAGACCGCGCTGCGCTCACGCAGG
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protein sequence of jgi.p|Trimin1|140513

>Trimin1|140513|gw1.199.5.1 ID=Trimin1|140513|gw1.199.5.1|Name=jgi.p|Trimin1|140513|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=78bp
VELLGEPLVLWQDSTKQWRAALDRCPHRWAPLSEGFVDPEQKRLTCAYHG
WEFEGDGRGARIQQAEGTAEETALRSRR
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mRNA from alignment at Contig_199:164193..164609-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17222 ID=mRNA_17222|Name=jgi.p|Trimin1|140513|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=417bp|location=Sequence derived from alignment at Contig_199:164193..164609- (Tribonema minus UTEX_B_3156 )
GTGGAGCTGCTGGGGGAGCCGCTAGTGCTGTGGCAAGACAGCACCAAGCA ATGGAGAGCAGCACTGGACAGGTATGGTTTGTTTTGGAGGATATAATCAA TGCACATAGCTGTGTGCTGACCCACGCAACTGAGGCCTGACCGCGCGCCA TCATGTGGTAGGAAATCAAATCTGGCTGCATGCCATCAGCGAGTGTCCAT GTACATCAACTCCAAATCTTCACGGCAATCCTGTGTGTGACATCGGATCC GCAGATGCCCTCACCGCTGGGCCCCGCTCAGCGAGGGATTTGTCGATCCT GAACAGAAACGGCTTACGTGCGCCTACCATGGTTGGGAGTTTGAGGGCGA CGGCAGGGGCGCTAGGATTCAGCAGGCAGAGGGGACTGCTGAAGAGACCG CGCTGCGCTCACGCAGG
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Coding sequence (CDS) from alignment at Contig_199:164193..164609-

>mRNA_17222 ID=mRNA_17222|Name=jgi.p|Trimin1|140513|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=234bp|location=Sequence derived from alignment at Contig_199:164193..164609- (Tribonema minus UTEX_B_3156 )
GTGGAGCTGCTGGGGGAGCCGCTAGTGCTGTGGCAAGACAGCACCAAGCA
ATGGAGAGCAGCACTGGACAGATGCCCTCACCGCTGGGCCCCGCTCAGCG
AGGGATTTGTCGATCCTGAACAGAAACGGCTTACGTGCGCCTACCATGGT
TGGGAGTTTGAGGGCGACGGCAGGGGCGCTAGGATTCAGCAGGCAGAGGG
GACTGCTGAAGAGACCGCGCTGCGCTCACGCAGG
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