mRNA_1722 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|346721
Unique NamemRNA_1722
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|346721 vs. uniprot
Match: A0A836CEY2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEY2_9STRA)

HSP 1 Score: 969 bits (2504), Expect = 0.000e+0
Identity = 512/512 (100.00%), Postives = 512/512 (100.00%), Query Frame = 2
Query:    5 MRTTRLSHKKGRPRRIQRGPPAYRKEESRRLVAAGERYDSIVLAPSHGHEEDSVLEDTRVTLRALSGYAGEIGGAGSARVLVAHVPELARIVGKTPTQASSRAGTPGNPIRSVLEARLRRWTSAERPVRLRMELDSEEEAAAFEDMLWCMYHGALPDEELMTPRRALQIMLAADKYDVDAAARHGVAWLASQRSFTWDEALALLGAPANVQVLFPSTVVDGALTVLLATLGDLEVAMNADAAFERLLSLPEAALVALLGNSQLAAAAESTVAAAAVVWAQRRGLRRVPDAVATCVRLVRLKPGFAASVTRFFPTWTPRVLALAAACAGSDAARAVVAQRGRGPAALHAAASATPRRASAVAAAEVSASLPLEELAQAFARAAQDGEVVTIPLQGSVAYAGYRWHVSVKASRCPDHAIGVYVNCDLGAEGRWRGARSGCVSYCASVRPPPPQQPGGGRVVRDIIGNVTGNVPGRWRAIQNLGNLTKAAWDASRFDDWVDSAGRLQFNVRVTLV 1540
            MRTTRLSHKKGRPRRIQRGPPAYRKEESRRLVAAGERYDSIVLAPSHGHEEDSVLEDTRVTLRALSGYAGEIGGAGSARVLVAHVPELARIVGKTPTQASSRAGTPGNPIRSVLEARLRRWTSAERPVRLRMELDSEEEAAAFEDMLWCMYHGALPDEELMTPRRALQIMLAADKYDVDAAARHGVAWLASQRSFTWDEALALLGAPANVQVLFPSTVVDGALTVLLATLGDLEVAMNADAAFERLLSLPEAALVALLGNSQLAAAAESTVAAAAVVWAQRRGLRRVPDAVATCVRLVRLKPGFAASVTRFFPTWTPRVLALAAACAGSDAARAVVAQRGRGPAALHAAASATPRRASAVAAAEVSASLPLEELAQAFARAAQDGEVVTIPLQGSVAYAGYRWHVSVKASRCPDHAIGVYVNCDLGAEGRWRGARSGCVSYCASVRPPPPQQPGGGRVVRDIIGNVTGNVPGRWRAIQNLGNLTKAAWDASRFDDWVDSAGRLQFNVRVTLV
Sbjct:    1 MRTTRLSHKKGRPRRIQRGPPAYRKEESRRLVAAGERYDSIVLAPSHGHEEDSVLEDTRVTLRALSGYAGEIGGAGSARVLVAHVPELARIVGKTPTQASSRAGTPGNPIRSVLEARLRRWTSAERPVRLRMELDSEEEAAAFEDMLWCMYHGALPDEELMTPRRALQIMLAADKYDVDAAARHGVAWLASQRSFTWDEALALLGAPANVQVLFPSTVVDGALTVLLATLGDLEVAMNADAAFERLLSLPEAALVALLGNSQLAAAAESTVAAAAVVWAQRRGLRRVPDAVATCVRLVRLKPGFAASVTRFFPTWTPRVLALAAACAGSDAARAVVAQRGRGPAALHAAASATPRRASAVAAAEVSASLPLEELAQAFARAAQDGEVVTIPLQGSVAYAGYRWHVSVKASRCPDHAIGVYVNCDLGAEGRWRGARSGCVSYCASVRPPPPQQPGGGRVVRDIIGNVTGNVPGRWRAIQNLGNLTKAAWDASRFDDWVDSAGRLQFNVRVTLV 512          
BLAST of jgi.p|Trimin1|346721 vs. uniprot
Match: A0A835YTX9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTX9_9STRA)

HSP 1 Score: 265 bits (676), Expect = 5.780e-78
Identity = 185/400 (46.25%), Postives = 219/400 (54.75%), Query Frame = 2
Query:  338 SVLEARLRRWTSAERPVRLRMELDSEEEAAAFEDMLWCMYHGALPDEELMTPRRALQIMLAADKYDVDAAARHGVAWLASQRSFTWDEALALLGAPANVQVLFPSTVVDGALTVLLATLGDLEVAMNADAAFERLLSLPEAALVALLGNSQLAAAAESTVAAAAVVWAQRRGLRRVPDAVATCVRLVRLKPGFAASVTRFFPTWTPRVLALAAACAGSDAARAVVAQRGRGPAALHAAASATPRRASAVAAAEVSASLPLEELAQAFARAAQDGEVVTIPLQGSVAYAGYRWHVSVKASRCPDHAIGVYVNCDLGAEGRWRGARSGCVSYCASVRPPPPQQPGGGRVVRDIIGNVTGNVPGRWRAIQNLGNLTKAAWDASRFDDWVDSAGRLQFNVRVTL 1537
            +VLEARLRRWTSA+RP                         G+      MT  RAL I LAADKY V  A R  V WL SQ SFTWDEALAL  AP +V+ LFP  V    L  L+A  GDLEVAM+ D A  +LLSLPE ALVALL    +A A ESTVA  AV WAQ+RG+  VPD+VA+CVR++RLKPGF A +T+FFP WTP VL LAAACAGS+  R ++ Q    P  L  A SA  RR SAV+AA  + S+PL EL +A  +  Q G  VTI L G V YAGYRW V+             Y+  D   E        G ++  A  R                     G+VPG WR +    +     WDAS+F+ WVD AG L FN RV L
Sbjct:  168 TVLEARLRRWTSADRP-------------------------GS------MTLPRALSIALAADKYGVSKAVRASVTWLESQESFTWDEALALFTAPLSVRRLFPQQVNGTLLHALVAASGDLEVAMDDDDACMQLLSLPEPALVALLRTGTVAVAEESTVAVVAVQWAQQRGMDTVPDSVASCVRIMRLKPGFTAGITQFFPQWTPAVLTLAAACAGSERTRMLMQQHKSSPVVLRLA-SAGRRRPSAVSAAHFATSVPLAELGEA--KVVQQGRDVTITLPGGVFYAGYRWFVTRG-----------YIKYDARME--CHAQVLGLINVRAGQR-------------------TEGSVPGSWRGVSIPSDTALGTWDASKFNGWVDDAGLLHFNARVVL 501          
BLAST of jgi.p|Trimin1|346721 vs. uniprot
Match: A0A836CJH4_9STRA (BACK domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJH4_9STRA)

HSP 1 Score: 199 bits (505), Expect = 3.290e-53
Identity = 150/406 (36.95%), Postives = 208/406 (51.23%), Query Frame = 2
Query:  338 SVLEARLRRWTSAERPVRLRMELDSEEEAAAFEDMLWCMYHGALPDEELMTPRRALQIMLAADKYDVDAAARHGVAWLASQRSFTWDEALALLGAPANVQVLFPSTVVDGALTVLLATLGDLEVAMNADAAFERLLSLPEAALVALLGNSQLAAAAESTVAAAAVVWAQRRGLRRVPDAVATCVRLVRLKPGFAASVTRFFPTWTPRVLALAAACAGSDAARAVVAQRGRGPAALHAAASATPRRASAVAAAEVSASLPLEELAQAFARAAQDGEVVTIPLQGSVAYAGYRWHV-----SVKASRCPDHAIGVYVNCDLGAEGRWRGARSGCVSYCASVRPPPPQQPGGGRVVRDIIGNVTGNVPGRWRAIQNLG-NLTKAAWDASRFDDWVDSAGRLQFNVRVTL 1537
            SVL ARL RW+  +RPVR+ +ELD E E AA ED++W MYHG +P E+ MT  RAL I   A+ + V+       AWL  Q S  WD+ L L   PA V+          A   +L   GDLEVAMN +   ++L+ LPEAA+V LL + +LA AAEST+ A A+ WAQ  G   VPDAVA+CVRL  L  GF A    FFP WTP  +AL +    S +A   + + G  P  L A ++   R  S+++A    A +P+ ELA AF+ A ++     +  +G   +AGY W++     +V  + C  +  GV++     A G   G       +C      P         +     +VT        +    G +L   AWDA+ F  W D AG L F+VR+ +
Sbjct:  112 SVLRARLSRWSGPDRPVRINIELDDEAEVAALEDVMWGMYHGKVPAED-MTVERALLIARTANAHAVEIVLCAATAWLNQQASLAWDDVLRLCDTPATVRDRLDFK---NAQAAMLQRAGDLEVAMNDEQLRKQLIELPEAAMVTLLSDDRLAVAAESTIVALAIRWAQHHGWASVPDAVASCVRLRYLDIGFLAGTAHFFPLWTPYAIALLSVGQTSPSAWQHLRKMGSVPQIL-AKSNELERPKSSISALHFKAVVPINELAVAFSNAVRERGTKDVLPRGGGYFAGYSWYLVPDISAVSMNPCR-YTAGVFLFQSKDANGCTTG-------FCKHKFAVPCIANDQTNTIERAFDDVTHRDSAACGSPNFFGLSLDSDAWDATHFGRWTDDAGNLTFDVRIEV 504          
BLAST of jgi.p|Trimin1|346721 vs. uniprot
Match: A0A835YNA7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNA7_9STRA)

HSP 1 Score: 194 bits (494), Expect = 7.850e-51
Identity = 155/406 (38.18%), Postives = 203/406 (50.00%), Query Frame = 2
Query:  338 SVLEARLRRWTSAERPVRLRMELDSEEEAAAFEDMLWCMYHGALPDEELMTPRRALQIMLAADKYDVDAAARHGVAWLASQRSFTWDEALALLGAPANVQVLFPSTVVDGALTVLLATLGDLEVAMNADAAFERLLSLPEAALVALLGNSQLAAAAESTVAAAAVVWAQRRGLRRVPDAVATCVRLVRLKPGFAASVTRFFPTWTPRVLALAAACAGSDAARAVVAQRGRGPAALHAAASATPRRASAVAAAEVSASLPLEELAQAFARAAQDGEVVTIPLQGSVAYAGYRWHVSVKASRCPDHAIG----VYVNCDLGAEGRWRGARSGCVSYCASVRPPPPQQPGGGRVVRDIIGNVT-GNVPGRWRAIQNLGNLTKAAWDASRFDDWVDSAGRLQFNVRVTLV 1540
            SVL +++  +  AERPVR+ ++LD E + AAFED+LW MYHG LP E+ MT  RAL I   AD Y V         WL  Q S   D+AL +  AP +V+       +  A T LL   GDLEVAMN      +L+ LPE ALVALL N  LA AAESTV      WA++  L +VPD VA C+RL  L  GF A VT FFP WTP VLAL  +   S +A   V +    P AL A      R  S++ AA+    + L ++A A  +A +      +P  GS+ Y GYRW+V  K     + A G    +YV+   GA+    G     V    + +              DI+ +V  G    R     N   +  AA D + F+ W D AG L F+V   L+
Sbjct:  216 SVLRSKVISYPGAERPVRIEIKLDDEADVAAFEDVLWGMYHGKLPAED-MTVERALAIARLADAYVVKIMLCAATEWLNQQASLARDDALRVYEAPDSVR---DRVDLRKAQTALLERAGDLEVAMNDQQVRRQLIRLPETALVALLRNDGLAVAAESTVVVLTTKWARQHRLAKVPDEVANCIRLKHLNTGFLAGVTHFFPQWTPAVLALLCSGKASPSAWQEVRKMENLPQAL-AGTRELERPKSSITAAKFKVVMSLNDVAAACGKAVEKRSSKHVPTSGSMYYGGYRWYVVAKVDARLEIAYGFRMALYVHQTTGAKSPVAGYIMRKVIVTCTAKD----------WTNDIMRSVQKGTADNRRWGWSNFFRVGLAAGDLNAFECWADDAGNLNFDVCAELL 606          
BLAST of jgi.p|Trimin1|346721 vs. uniprot
Match: A0A835Z2E5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2E5_9STRA)

HSP 1 Score: 184 bits (467), Expect = 1.110e-47
Identity = 124/280 (44.29%), Postives = 165/280 (58.93%), Query Frame = 2
Query:  338 SVLEARLRRWTSAERPVRLRMELDSEEEAAAFEDMLWCMYHGALPDEELMTPRRALQIMLAADKYDVDAAARHGVAWLASQRSFTWDEALALLGAPANVQVLFPSTVVDGALTVLLATLGDLEVAMNADAAFERLLSLPEAALVALLGNSQLAAAAESTVAAAAVVWAQRRGLRRVPDAVATCVRLVRLKPGFAASVTRFFPTWTPRVLALAAACAGSDAARAVVAQRGRGPAALHAAASATPRRA-SAVAAAEVSASLPLEELAQAFARAAQDGEVVTI 1174
            ++L+A+L R   AERPVR+ +   +E +  AFED++W +YHG LP E+ MT RRAL I   AD Y V         WL  Q+ F+WDEA+ +  AP +++       +  A   LL  LGDLE AMN +   +RL SLPEAAL ALL + +LA A ES+V AA ++W   + L   PDAVA CVRL  L PG+ A+VT FFP WTP+VLAL   CA    A   + ++   P  L A  ++  RRA S  AAAE+   + L EL QA+  AA+DG    +
Sbjct:    4 TILQAKLSRCAGAERPVRINILFVNEADVDAFEDVMWAIYHGKLPRED-MTVRRALLIAQQADAYAVHTVLFFATRWLNQQQHFSWDEAVRIFRAPPSIRERLQ---LGRATDALLRRLGDLEAAMNDEHLRDRLASLPEAALAALLSDDRLAVADESSVVAAILLWTNDQALATAPDAVAACVRLTHLDPGYLAAVTAFFPQWTPQVLALLWKCAVRPQAWQALCEQDGSPPVLRA--TSRQRRARSLTAAAELQVRVSLRELEQAYRGAARDGRATAV 277          
BLAST of jgi.p|Trimin1|346721 vs. uniprot
Match: A0A835YTL1_9STRA (BTB domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTL1_9STRA)

HSP 1 Score: 174 bits (440), Expect = 9.210e-47
Identity = 91/127 (71.65%), Postives = 105/127 (82.68%), Query Frame = 2
Query:  338 SVLEARLRRWTSAERPVRLRMELDSEEEAAAFEDMLWCMYHGALPDEELMTPRRALQIMLAADKYDVDAAARHGVAWLASQRSFTWDEALALLGAPANVQVLFPSTVVDGALTVLLATLGDLEVAMN 718
            SVLEARL RWTSA+RPVRL + LDSEEE  AFEDMLWC+YH ALPDEE+MTP RA+ IMLAAD++DV AAA+  +AWL SQ SFT DEALAL  APA+VQ LFPS + + AL+ LLA +GDLEVAMN
Sbjct:  101 SVLEARLCRWTSAQRPVRLYIPLDSEEETMAFEDMLWCIYHDALPDEEIMTPHRAIHIMLAADRFDVPAAAQQCIAWLESQGSFTLDEALALFAAPASVQQLFPSALEEHALSALLAAVGDLEVAMN 227          
BLAST of jgi.p|Trimin1|346721 vs. uniprot
Match: A0A835YNG8_9STRA (BACK domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNG8_9STRA)

HSP 1 Score: 178 bits (451), Expect = 1.130e-45
Identity = 143/410 (34.88%), Postives = 196/410 (47.80%), Query Frame = 2
Query:  338 SVLEARLRRWTSAERPVRLRMELDSEEEAAAFEDMLWCMYHGALPDEELMTPRRALQIMLAADKYDVDAAARHGVAWLASQRSFTWDEALALLGAPANVQVLFPSTVVDGALTVLLATLGDLEVAMNADAAFERLLSLPEAALVALLGNSQLAAAAESTVAAAAVVWAQRRGLRRVPDAVATCVRLVRLKPGFAASVTRFFPTWTPRVLALAAACAGSDAARAVVAQRG--RGPAALHAAASATPRRASAVAAAEVSASLPLEELAQAFARAAQDGEVVTIPLQGSVAYAGYRWHVSVKASRCPDHAIGVYVNCDLGAEGRWRGARSGCVSYCASVRPPPPQQPGGGRVVRDIIGN--------VTGNVPGRWRAIQNLGNLTKAAWDASRFDDWVDSAGRLQFNVRVTL 1537
            SVL +++  +  AERPVR+ ++LD E + AAFED+ W MYHG     E MT  RAL I   AD Y V+      + WL  Q S  WD+AL +  AP +V+       +  A T +L   GDLEVAMN +    +L+ LPE ALVALL + +LA AAESTV A  + WAQ+R L +VPD +A C+RL  L  G+ A VT FFP WT  V+AL   C G   + A    R     P  L   AS   R  S++ AA+    + L  +A AF  A +   +  +       Y GY W +       PD +   +V+  +        +  G V    +V              +D   N          GN+   W    +   ++ AAWD++ F+   D AG L F V   L
Sbjct:  103 SVLRSKVISYPGAERPVRIEIKLDDEADVAAFEDVSWGMYHGGKLPAEDMTVGRALAIARLADAYVVNIVLWAAIEWLNQQASLAWDDALRVCHAPVSVRDRLD---LGKATTAMLERAGDLEVAMNDEQVRTQLIELPETALVALLSDERLAVAAESTVVALTIKWAQQRRLAKVPDQMANCIRLKHLHSGYLAGVTHFFPRWTADVVALV--CVGKHLSSAWQDVRTMLNAPQVL-VRASQLERPKSSITAAKFKVVMSLINVAAAFGNAVEKQFIQEVLTSSGTYYGGYCWRLEATVRPDPDASSHYFVDVHILQTVSANSSTGGFVERNIAVA----------CTAKDHAHNKEFSTQKGTAGNLGWGWT---DFFEISLAAWDSNVFERCADDAGNLNFEVCAEL 493          
BLAST of jgi.p|Trimin1|346721 vs. uniprot
Match: A0A836CAZ8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAZ8_9STRA)

HSP 1 Score: 152 bits (383), Expect = 1.870e-39
Identity = 85/171 (49.71%), Postives = 111/171 (64.91%), Query Frame = 2
Query:  341 VLEARLRRWTSAERPVRLRMELDSEEEAAAFEDMLWCMYHGALPDEELMTPRRALQIMLAADKYDVDAAARHGVAWLASQRSFTWDEALALLGAPANVQVLFPSTVVDGALTVLLATLGDLEVAMNADAAFERLLSLPEAALVALLGNSQLAAAAESTVAAAAVVWAQRRG 853
            VL+ARLRRWTS ERPVR+ ++++ ++E AAFED+LW  YH  LPD E MT  RAL I   ADKY V+       AWL  Q  F+WDE LA+  AP  ++  +P TV +  ++ L+  LGDLE++M A    + LL+LP+ AL  LL +  LA AAESTVA  A+ WA  RG
Sbjct:    6 VLQARLRRWTSPERPVRIYLKMEDDQETAAFEDVLWATYHNRLPDAEKMTVVRALSIAQTADKYVVERVMSMCAAWLGEQGGFSWDEMLAVCSAPFGIRERYPVTVQERVMSTLVEQLGDLELSMIAPEQKKELLALPQPALFTLLRSDALAVAAESTVAVVALGWALHRG 176          
BLAST of jgi.p|Trimin1|346721 vs. uniprot
Match: A0A836C805_9STRA (BACK domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C805_9STRA)

HSP 1 Score: 147 bits (371), Expect = 5.600e-34
Identity = 128/338 (37.87%), Postives = 160/338 (47.34%), Query Frame = 2
Query:  338 SVLEARLRRWTSAERPVRLRMELDSEEEAAAFEDMLWCMYHGALPD---------------EELMTPRRALQIMLAADKYDVDAAARHGVAWLASQRS------------------FTWDEALALLGAPANVQVLFPSTVVDGALTVLLATLGDLEVAMNAD---AAFERLLSLPEAALVALLGNSQLAAAAESTVAAAAVVWAQRRGLRRVPDAVATCVRLVRLKPGFAASVTRFFPTWTPRVLALAAACAGSDAARAV---------VAQRGRGPAALHAAASATPRRASAVAAAEVSASLPLEELAQAFARAAQDGEVVTIPLQ--GSVAYAGYR 1210
            ++L A+L R+  A RP R+R+ L    EA+AFE MLW +YHGALP                   M+   AL I   A  Y  D A      WL + R                     WD+ALAL  AP  V+    +     AL  LLA +GDLE+ +N     AA   L +LPE AL+ALL   +LA AAESTVAAAA++WA+   L  VP+ VA CVRL  L+P FAA VT  FP W+ RV AL   C   +A  A          V     G A          R AS V +A   A +PL+++A AF R  + G V  I     G   YAG R
Sbjct:  124 AMLRAKLLRYAGAARPFRMRIALSDAAEASAFEAMLWTLYHGALPPGNDNGXXXXXXXXXXXSGMSAHGALAIAQVARAYGADRALIAAANWLDAHRCQPSRDNXXXXXXXXXXXXXAWDDALALFAAPPAVRQCLSAETRRAALRALLARVGDLELVLNGSEGGAARAALAALPEDALIALLSADELAVAAESTVAAAALLWARAHRLNAVPNGVAGCVRLKALRPEFAAGVTCAFPQWSARVFALLMTCESCEALGACGHLAHANDEVRDHLNGRA----------RTASVVRSARFRAIVPLDDVAAAFGRCMETGVVQDIRAAAVGVTEYAGLR 451          
BLAST of jgi.p|Trimin1|346721 vs. uniprot
Match: A0A835YI31_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI31_9STRA)

HSP 1 Score: 132 bits (332), Expect = 7.020e-32
Identity = 94/235 (40.00%), Postives = 121/235 (51.49%), Query Frame = 2
Query:  338 SVLEARLRRWTSAERPVRLRMELDSEEEAAAFEDMLWCMYHGALPDEELMTPRRALQIMLAADKYDVDAAARHGVAWLASQRSFTWDEALALLGAPANVQVLFPSTVVDGALTVLLATLGDLEVAMNADAAFERLLSLPEAALVALLGNSQLAAAAESTVAAAAVVWAQRRGLRRVPDAVATCVRLVRLKPGFAASVTRFFPTWTPRVLALAAACAGSDAARAVVAQRGRGPAAL 1042
            SVL  +L+RWT AERP+R+ +ELD E +   FED+LW MY   LP E  MT  RAL I   AD Y  +       AW+  Q S TWD+AL +  AP +V+       +  A T +L   G                            + +LA AAESTV A  + WA++  L  VPDAVA C+RL  L+ G+ A VTR+FP WT  V+AL +A   S AA + V Q    P AL
Sbjct:    4 SVLRNKLQRWTGAERPMRIEVELDDEADVPVFEDVLWGMYQVKLPAEN-MTVERALAIARLADAYFDETVLCAATAWINEQASLTWDDALRVCEAPVSVRDRLD---LRKAQTTMLGRQGT-------------------------WNDDRLAVAAESTVVALTMQWAEQHKLATVPDAVACCIRLKHLQCGYIAGVTRWFPQWTVEVVALLSAGQASPAAWSDVRQMENSPQAL 209          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|346721 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A836CEY2_9STRA0.000e+0100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YTX9_9STRA5.780e-7846.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CJH4_9STRA3.290e-5336.95BACK domain-containing protein n=1 Tax=Tribonema m... [more]
A0A835YNA7_9STRA7.850e-5138.18Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z2E5_9STRA1.110e-4744.29Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YTL1_9STRA9.210e-4771.65BTB domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A835YNG8_9STRA1.130e-4534.88BACK domain-containing protein n=1 Tax=Tribonema m... [more]
A0A836CAZ8_9STRA1.870e-3949.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836C805_9STRA5.600e-3437.87BACK domain-containing protein n=1 Tax=Tribonema m... [more]
A0A835YI31_9STRA7.020e-3240.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_4contigContig_4:1599909..1603970 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|346721|estExt_Genemark1.C_Ctg_40186
Hectar predicted targeting categoryother localisation
TranscriptId347043
TrackFilteredModels1
ProteinId346721
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|346721gene_1722Tribonema minus UTEX_B_3156 geneContig_4 1599909..1603970 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|346721Trimin1|346721|estExt_Genemark1.C_Ctg_40186Tribonema minus UTEX_B_3156 polypeptideContig_4 1600143..1603966 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1722_6exon_1722_6Tribonema minus UTEX_B_3156 exonContig_4 1599909..1601349 -
exon_1722_5exon_1722_5Tribonema minus UTEX_B_3156 exonContig_4 1601394..1601467 -
exon_1722_4exon_1722_4Tribonema minus UTEX_B_3156 exonContig_4 1602750..1602786 -
exon_1722_3exon_1722_3Tribonema minus UTEX_B_3156 exonContig_4 1603521..1603582 -
exon_1722_2exon_1722_2Tribonema minus UTEX_B_3156 exonContig_4 1603700..1603783 -
exon_1722_1exon_1722_1Tribonema minus UTEX_B_3156 exonContig_4 1603892..1603970 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_1722UTR3_1722Tribonema minus UTEX_B_3156 three_prime_UTRContig_4 1599909..1600142 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1722CDS_1722Tribonema minus UTEX_B_3156 CDSContig_4 1603892..1603966 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_1722UTR5_1722Tribonema minus UTEX_B_3156 five_prime_UTRContig_4 1603967..1603970 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1722 ID=mRNA_1722|Name=jgi.p|Trimin1|346721|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1777bp|location=Sequence derived from alignment at Contig_4:1599909..1603970- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCTGATGCGCACGACGCGGCTGAGCCACAAGAAGGGCAGGCCGCGCCGCA
TCCAGCGGGGGCCGCCCGCGTACCGGAAAGAGGAGAGCCGGAGGCTGGTG
GCAGCAGGGGAGCGCTACGACTCGATCGTGCTAGCGCCTTCCCACGGGCA
CGAAGAGGACTCGGTGCTGGAGGACACGAGGGTCACATTGCGTGCTCTGA
GCGGGTACGCAGGGGAGATAGGCGGGGCGGGCAGCGCGCGTGTGCTCGTG
GCGCACGTGCCGGAGCTGGCGAGGATAGTGGGGAAGACACCGACGCAGGC
AAGCAGCAGGGCGGGGACGCCTGGGAACCCAATTCGCAGCGTGCTGGAAG
CGAGGCTACGCCGCTGGACCAGCGCCGAGAGGCCGGTGCGCCTGCGCATG
GAGCTGGACAGCGAGGAGGAGGCCGCCGCCTTTGAGGACATGCTGTGGTG
CATGTACCACGGCGCGTTGCCCGACGAAGAGCTCATGACGCCCCGCCGCG
CGCTTCAGATCATGCTGGCAGCGGACAAGTACGACGTGGACGCGGCGGCG
CGGCACGGCGTCGCGTGGCTGGCGTCACAGCGCTCATTCACGTGGGACGA
AGCCCTCGCTCTGCTGGGCGCGCCCGCCAACGTTCAGGTGCTCTTCCCTT
CGACAGTCGTGGACGGCGCGCTGACCGTGCTGCTGGCGACTCTGGGGGAC
CTGGAGGTCGCAATGAACGCTGACGCCGCTTTCGAGCGTCTGCTGAGCCT
TCCAGAGGCAGCGCTGGTCGCGCTGCTCGGCAACAGCCAGCTCGCGGCGG
CGGCGGAGAGCACCGTCGCGGCGGCGGCGGTGGTGTGGGCGCAGCGGCGC
GGCCTGCGCAGGGTGCCGGACGCCGTCGCCACGTGCGTGCGGCTCGTGCG
CCTCAAGCCCGGCTTCGCGGCGAGCGTCACGCGCTTCTTCCCGACGTGGA
CGCCGCGCGTGCTCGCGCTGGCGGCGGCGTGCGCCGGCAGCGACGCGGCG
CGCGCAGTCGTGGCGCAGCGCGGCCGCGGGCCGGCGGCGCTGCACGCCGC
GGCGAGCGCCACGCCGCGCCGCGCGTCGGCGGTCGCCGCGGCGGAGGTGA
GCGCGTCGCTGCCGCTCGAGGAGCTGGCGCAGGCCTTTGCGCGCGCCGCG
CAGGACGGTGAAGTCGTCACGATTCCGCTGCAGGGCAGCGTCGCCTACGC
CGGGTACCGCTGGCACGTGAGCGTCAAGGCGTCGCGGTGCCCCGACCACG
CGATCGGCGTGTACGTCAACTGCGACCTCGGCGCGGAGGGGCGCTGGCGC
GGCGCGCGCTCGGGCTGCGTCAGCTACTGCGCCAGCGTGCGCCCCCCGCC
CCCGCAGCAGCCGGGGGGGGGGCGCGTTGTCCGCGACATCATCGGGAATG
TGACAGGAAATGTACCGGGCCGCTGGAGGGCCATCCAGAACCTGGGCAAC
CTCACAAAGGCCGCCTGGGATGCGAGCAGGTTCGATGACTGGGTCGACAG
CGCCGGCCGGCTGCAGTTCAATGTGCGGGTCACGCTGGTGTAGCTGCGCC
CGGCGGGGGAGGAGGCTGACTGCACTGGAGGGCAAGGTGTCCTTTGCGTT
ACGATTTGCCGGTAGGGCGCAAGCCCAGATGATGGATGCCAGGCTTGCGA
CGGGAGTCTACACGTATCTCTGTGACAAGGTGTCTCAACGCTCATCGACA
ATCACTCTGGGTGACATTGCCAAAGACTCTGTTAGAAGTGCAATGACGAC
AAGCGATGTGTTTTTCTTCAGGCAATG
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protein sequence of jgi.p|Trimin1|346721

>Trimin1|346721|estExt_Genemark1.C_Ctg_40186 ID=Trimin1|346721|estExt_Genemark1.C_Ctg_40186|Name=jgi.p|Trimin1|346721|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=513bp
MRTTRLSHKKGRPRRIQRGPPAYRKEESRRLVAAGERYDSIVLAPSHGHE
EDSVLEDTRVTLRALSGYAGEIGGAGSARVLVAHVPELARIVGKTPTQAS
SRAGTPGNPIRSVLEARLRRWTSAERPVRLRMELDSEEEAAAFEDMLWCM
YHGALPDEELMTPRRALQIMLAADKYDVDAAARHGVAWLASQRSFTWDEA
LALLGAPANVQVLFPSTVVDGALTVLLATLGDLEVAMNADAAFERLLSLP
EAALVALLGNSQLAAAAESTVAAAAVVWAQRRGLRRVPDAVATCVRLVRL
KPGFAASVTRFFPTWTPRVLALAAACAGSDAARAVVAQRGRGPAALHAAA
SATPRRASAVAAAEVSASLPLEELAQAFARAAQDGEVVTIPLQGSVAYAG
YRWHVSVKASRCPDHAIGVYVNCDLGAEGRWRGARSGCVSYCASVRPPPP
QQPGGGRVVRDIIGNVTGNVPGRWRAIQNLGNLTKAAWDASRFDDWVDSA
GRLQFNVRVTLV*
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mRNA from alignment at Contig_4:1599909..1603970-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1722 ID=mRNA_1722|Name=jgi.p|Trimin1|346721|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4062bp|location=Sequence derived from alignment at Contig_4:1599909..1603970- (Tribonema minus UTEX_B_3156 )
GCTGATGCGCACGACGCGGCTGAGCCACAAGAAGGGCAGGCCGCGCCGCA TCCAGCGGGGGCCGCCCGCGTACCGGAAAGTACTCATCATCGCCAGTACG GCTGATGCAGGCTGGCTGCCTGCTGAAAAACGCCACAGGAGGGTTCATGG CACGTCCAGGCACGTCAAATCCCTGCGTGAGCTTCAGGAGGAGAGCCGGA GGCTGGTGGCAGCAGGGGAGCGCTACGACTCGATCGTGCTAGCGCCTTCC CACGGGCACGAAGAGGACTCGGTCGTGTTTTGAGGCAGATCAAGGGGCAG TAGACAAGTGGACAGAGTGCTAGCGATTCAATCGTTGACAGATCGGGTGC ACATTTGCACTTGCCACCAAGGCCGCTTCGTGGAGCAGGTGCTGGAGGAC ACGAGGGTCACATTGCGTGCTCTGAGCGGGTACGCAGGGGAGATAGGCGG GTCAGTGGACGGCGTCACATTCGAATTTTGTGAAAAATTCCAGCTAGAGG ACGCCTTCTGCGGTTGCCCCCTGGAGCGCACAGTGAAGGCGCACAGACAC CGCAGCTGCCCATGTGCGCCAGAAACAAGATTTCTTCGCGTAGCCAGACG CCCGTGAGGGGTGGCCGTTCACGTTTTGTTCAGAATTTCAACAAATATTC GAAGATAAACTTGTGGTCTTGAGGCGTTCTGTTTATGTATGTCTGCTGAT GCATTGCTGCTCACTTGAAGAATGCACATGGCAATCCAGTTGATCACCCT GGTGATCGAAGGTCAGCACCTGAACTGAACCGTCGTAATACGAAGCGGTT CACAGGCATGGGGGATCCACAATCATGATGCCCCACATGCAGGCACAGAG ACGCAGGTGCTTTCTTCTGCAATTGACCGAGAGAAGACCGTGACGTCGCT GTGCGACTCAGACCATGATGAGTGCGCCGTGAGATATGATGAACCTATGG TATGCCTAGCGTAGCATGTACGTATGCAGTATCATGCCAGCGGTAGCGCG ACGCGAACCACGAGCAGCAATGGATTGGTGTTTGGTTTGTGGCGCTCATG AGCGCACACACGGCAATGCATTGCGCAAGCGGTGTCGTCAGCAGCATCGG AAGGTTCACATAGACGCTGCAGCATCGCTCAGAGCAGCGTCAGCTGCATG TGCGCGCTAAGCGCCTGGACCGGCATGCGACCAGGGCGGGCAGCGCGCGT GTGCTCGTGGCGCACGTGCCGGTATGACTACGTCAATCCCACTAGACGTT GCTTACATTAACAAGGCACTGAAGCCCCCTGTACGCCTCGTAATTGCGCA ACGATGTTACAGAGTCCTGCAAACTTTGGTGCATTGAGCGAGCAAGAATG CGCTGCTTGAGAAGCGTGTTGGCTACTTCTGTGGAAGTACTGGCAGTGTG GTACAGCTCCAATGATCCTGTGAAAAAGGCACGTACGTGTACTTTTCTTG CAGAAAGCCGCATGATGTAATGGTCCATAGCATAGCAACAAATACGCTAC TTGCACAAAACTGTCCAGATGAGGCTGGTGCTGACTGAGCGTGCTTTATG TCACCTACATACGCATAGATCAAATGTTTGAGGGAGTAAATTTATCACGG CAACACATGGGGATGCACCCAGGGTACCATCATTTCAAACTGATATGTGC ACTCGTCAACATGGTGTCCTCATGAAAGTTGCGATGGAAGATGCACAGTG CCTCTCACTCTGGGTCGGTCTCGATGTCATACTGAGACGATCGTGTACGT ACCAGTACACTGTCAGGCATTCATGAAACCCGGTGGTCCTTCTGGTTCAC CTTGCTGGCATGTATTCGAGCACAGCAACAGTCTTCGGCTTTGGCAGGCA ATGTCAGGGCATCCTCGTCAGAAGAAGAAGAAGCAAGCATGAATCGTATC GTGCCCACGCTCCATGCGTCTTTCGCGGCAGAAGTTCGATGCTCAGAGAC TCCAACACAGTAGATGCACAGAAAGCAAGTTACATTGCTTTTGCTGAAGG AGGAGGCTCATGTGCCAATCGCAGGAATGAAAAGTTGAGGTTTAAAGTGT TGAGGTTCGGGAGTTGGTAGAAAAGAAAACCCATACCCCTGTATGCCTGG GGCTGGCGCTGCGTTTGGCGGTCGTTCATAACTGGCAATCACCCTGCTGA CTGGCCATCCCGAACCCGCGGCCCCTTTGTCACTGTCGTACCGCAAATGT TTGACCCAGTCCATGACATCGAACCCGACGGTATGGGCAGTCCTGCTTGT AAGGAACGTTGTGCGGCGGTGTGGGATGATCCAACTTTTTCCGACATTGT GGTGACGTACGGTGTCGTACCGAGGCAAGCGCTCCAGTCCAGGGGCAAGA GGAAGCGGGCCCGGGAGGAGGGTGACGATAGCGATGAAGGAAGCGCTCTT GCATCGTCTTACATCGGCAGGAGCGGTGGACGGAGACGTATCAAGGTCAA CGGTACAGGTGACAATGCTTCCCGCGCTGGCGCTATCGAAACGCACCGCA CAGGAGCTGGCGAGGATAGTGGGGAAGACACCGACGCAGGCAAGCAGCAG GGCGGGGACGCCTGGGAACCCAATTCGGTCAGGCACTTAAGGTTGCATGC TGTCGTCCTGATGGTCCACAGCAGCGTGCTGGAAGCGAGGCTACGCCGCT GGACCAGCGCCGAGAGGCCGGTGCGCCTGCGCATGGAGCTGGACAGCGAG GAGGAGGCCGCCGCCTTTGAGGACATGCTGTGGTGCATGTACCACGGCGC GTTGCCCGACGAAGAGCTCATGACGCCCCGCCGCGCGCTTCAGATCATGC TGGCAGCGGACAAGTACGACGTGGACGCGGCGGCGCGGCACGGCGTCGCG TGGCTGGCGTCACAGCGCTCATTCACGTGGGACGAAGCCCTCGCTCTGCT GGGCGCGCCCGCCAACGTTCAGGTGCTCTTCCCTTCGACAGTCGTGGACG GCGCGCTGACCGTGCTGCTGGCGACTCTGGGGGACCTGGAGGTCGCAATG AACGCTGACGCCGCTTTCGAGCGTCTGCTGAGCCTTCCAGAGGCAGCGCT GGTCGCGCTGCTCGGCAACAGCCAGCTCGCGGCGGCGGCGGAGAGCACCG TCGCGGCGGCGGCGGTGGTGTGGGCGCAGCGGCGCGGCCTGCGCAGGGTG CCGGACGCCGTCGCCACGTGCGTGCGGCTCGTGCGCCTCAAGCCCGGCTT CGCGGCGAGCGTCACGCGCTTCTTCCCGACGTGGACGCCGCGCGTGCTCG CGCTGGCGGCGGCGTGCGCCGGCAGCGACGCGGCGCGCGCAGTCGTGGCG CAGCGCGGCCGCGGGCCGGCGGCGCTGCACGCCGCGGCGAGCGCCACGCC GCGCCGCGCGTCGGCGGTCGCCGCGGCGGAGGTGAGCGCGTCGCTGCCGC TCGAGGAGCTGGCGCAGGCCTTTGCGCGCGCCGCGCAGGACGGTGAAGTC GTCACGATTCCGCTGCAGGGCAGCGTCGCCTACGCCGGGTACCGCTGGCA CGTGAGCGTCAAGGCGTCGCGGTGCCCCGACCACGCGATCGGCGTGTACG TCAACTGCGACCTCGGCGCGGAGGGGCGCTGGCGCGGCGCGCGCTCGGGC TGCGTCAGCTACTGCGCCAGCGTGCGCCCCCCGCCCCCGCAGCAGCCGGG GGGGGGGCGCGTTGTCCGCGACATCATCGGGAATGTGACAGGAAATGTAC CGGGCCGCTGGAGGGCCATCCAGAACCTGGGCAACCTCACAAAGGCCGCC TGGGATGCGAGCAGGTTCGATGACTGGGTCGACAGCGCCGGCCGGCTGCA GTTCAATGTGCGGGTCACGCTGGTGTAGCTGCGCCCGGCGGGGGAGGAGG CTGACTGCACTGGAGGGCAAGGTGTCCTTTGCGTTACGATTTGCCGGTAG GGCGCAAGCCCAGATGATGGATGCCAGGCTTGCGACGGGAGTCTACACGT ATCTCTGTGACAAGGTGTCTCAACGCTCATCGACAATCACTCTGGGTGAC ATTGCCAAAGACTCTGTTAGAAGTGCAATGACGACAAGCGATGTGTTTTT CTTCAGGCAATG
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Coding sequence (CDS) from alignment at Contig_4:1599909..1603970-

>mRNA_1722 ID=mRNA_1722|Name=jgi.p|Trimin1|346721|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1539bp|location=Sequence derived from alignment at Contig_4:1599909..1603970- (Tribonema minus UTEX_B_3156 )
ATGCGCACGACGCGGCTGAGCCACAAGAAGGGCAGGCCGCGCCGCATCCA
GCGGGGGCCGCCCGCGTACCGGAAAGAGGAGAGCCGGAGGCTGGTGGCAG
CAGGGGAGCGCTACGACTCGATCGTGCTAGCGCCTTCCCACGGGCACGAA
GAGGACTCGGTGCTGGAGGACACGAGGGTCACATTGCGTGCTCTGAGCGG
GTACGCAGGGGAGATAGGCGGGGCGGGCAGCGCGCGTGTGCTCGTGGCGC
ACGTGCCGGAGCTGGCGAGGATAGTGGGGAAGACACCGACGCAGGCAAGC
AGCAGGGCGGGGACGCCTGGGAACCCAATTCGCAGCGTGCTGGAAGCGAG
GCTACGCCGCTGGACCAGCGCCGAGAGGCCGGTGCGCCTGCGCATGGAGC
TGGACAGCGAGGAGGAGGCCGCCGCCTTTGAGGACATGCTGTGGTGCATG
TACCACGGCGCGTTGCCCGACGAAGAGCTCATGACGCCCCGCCGCGCGCT
TCAGATCATGCTGGCAGCGGACAAGTACGACGTGGACGCGGCGGCGCGGC
ACGGCGTCGCGTGGCTGGCGTCACAGCGCTCATTCACGTGGGACGAAGCC
CTCGCTCTGCTGGGCGCGCCCGCCAACGTTCAGGTGCTCTTCCCTTCGAC
AGTCGTGGACGGCGCGCTGACCGTGCTGCTGGCGACTCTGGGGGACCTGG
AGGTCGCAATGAACGCTGACGCCGCTTTCGAGCGTCTGCTGAGCCTTCCA
GAGGCAGCGCTGGTCGCGCTGCTCGGCAACAGCCAGCTCGCGGCGGCGGC
GGAGAGCACCGTCGCGGCGGCGGCGGTGGTGTGGGCGCAGCGGCGCGGCC
TGCGCAGGGTGCCGGACGCCGTCGCCACGTGCGTGCGGCTCGTGCGCCTC
AAGCCCGGCTTCGCGGCGAGCGTCACGCGCTTCTTCCCGACGTGGACGCC
GCGCGTGCTCGCGCTGGCGGCGGCGTGCGCCGGCAGCGACGCGGCGCGCG
CAGTCGTGGCGCAGCGCGGCCGCGGGCCGGCGGCGCTGCACGCCGCGGCG
AGCGCCACGCCGCGCCGCGCGTCGGCGGTCGCCGCGGCGGAGGTGAGCGC
GTCGCTGCCGCTCGAGGAGCTGGCGCAGGCCTTTGCGCGCGCCGCGCAGG
ACGGTGAAGTCGTCACGATTCCGCTGCAGGGCAGCGTCGCCTACGCCGGG
TACCGCTGGCACGTGAGCGTCAAGGCGTCGCGGTGCCCCGACCACGCGAT
CGGCGTGTACGTCAACTGCGACCTCGGCGCGGAGGGGCGCTGGCGCGGCG
CGCGCTCGGGCTGCGTCAGCTACTGCGCCAGCGTGCGCCCCCCGCCCCCG
CAGCAGCCGGGGGGGGGGCGCGTTGTCCGCGACATCATCGGGAATGTGAC
AGGAAATGTACCGGGCCGCTGGAGGGCCATCCAGAACCTGGGCAACCTCA
CAAAGGCCGCCTGGGATGCGAGCAGGTTCGATGACTGGGTCGACAGCGCC
GGCCGGCTGCAGTTCAATGTGCGGGTCACGCTGGTGTAG
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