mRNA_17201 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|147226
Unique NamemRNA_17201
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|147226 vs. uniprot
Match: A0A836CI25_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI25_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 5.760e-5
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 1 
Query:    1 MPNSVKSLHVAGSRFNSRFYTLP 69
            MPNSVKSLHVAGSRFNSRFYTLP
Sbjct:    1 MPNSVKSLHVAGSRFNSRFYTLP 23
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|147226 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CI25_9STRA5.760e-5100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_200contigContig_200:230014..230484 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|147226|gw1.200.29.1
Hectar predicted targeting categoryother localisation
TranscriptId147548
TrackFilteredModels1
ProteinId147226
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|147226gene_17201Tribonema minus UTEX_B_3156 geneContig_200 230014..230484 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17201_1exon_17201_1Tribonema minus UTEX_B_3156 exonContig_200 230014..230484 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17201CDS_17201Tribonema minus UTEX_B_3156 CDSContig_200 230014..230484 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|147226Trimin1|147226|gw1.200.29.1Tribonema minus UTEX_B_3156 polypeptideContig_200 230014..230484 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17201 ID=mRNA_17201|Name=jgi.p|Trimin1|147226|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=471bp|location=Sequence derived from alignment at Contig_200:230014..230484- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGAACAGTGTCAAAAGCCTCCATGTCGCTGGCTCACGCTTCAACAG
CCGGTTCTACACCCTGCCGCGCAACCTGAAGACCCTCTACGTTGCCGGCG
ACAGATTCAACCAACCTGTCTACAGCCTGTCTGCGGGCCTTCGCACACTT
GAGATCAGCGGTGCCGCGTACAACAAGGACCTGCCGGCCCTGCCGGCGGG
GCTCAAGACCCTGCGCATCAGCGGCGACCGCTTCAACAGGTCGCTTCCTG
CCATGCCCGCGGGCCTGGAGACGCTTGAGATCAGTGGCGCCGTGTTCAAC
AGGACACTGCGGGCCCTGCCGGCGGGGCTCAAGACCCTGTGCATCAGGGG
GGACCGCTTTAATAGGCCGCTTCCTGCCATCCGCGCGGGCCTGGAGACGC
TCGAGATCAGCTGCGCCATCTATGCCCAGCCGCTGCCTGCGCTTCCAGGC
GGCCTCAAAACGCTCATCGTC
back to top

protein sequence of jgi.p|Trimin1|147226

>Trimin1|147226|gw1.200.29.1 ID=Trimin1|147226|gw1.200.29.1|Name=jgi.p|Trimin1|147226|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=157bp
MPNSVKSLHVAGSRFNSRFYTLPRNLKTLYVAGDRFNQPVYSLSAGLRTL
EISGAAYNKDLPALPAGLKTLRISGDRFNRSLPAMPAGLETLEISGAVFN
RTLRALPAGLKTLCIRGDRFNRPLPAIRAGLETLEISCAIYAQPLPALPG
GLKTLIV
back to top

mRNA from alignment at Contig_200:230014..230484-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17201 ID=mRNA_17201|Name=jgi.p|Trimin1|147226|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=471bp|location=Sequence derived from alignment at Contig_200:230014..230484- (Tribonema minus UTEX_B_3156 )
ATGCCGAACAGTGTCAAAAGCCTCCATGTCGCTGGCTCACGCTTCAACAG
CCGGTTCTACACCCTGCCGCGCAACCTGAAGACCCTCTACGTTGCCGGCG
ACAGATTCAACCAACCTGTCTACAGCCTGTCTGCGGGCCTTCGCACACTT
GAGATCAGCGGTGCCGCGTACAACAAGGACCTGCCGGCCCTGCCGGCGGG
GCTCAAGACCCTGCGCATCAGCGGCGACCGCTTCAACAGGTCGCTTCCTG
CCATGCCCGCGGGCCTGGAGACGCTTGAGATCAGTGGCGCCGTGTTCAAC
AGGACACTGCGGGCCCTGCCGGCGGGGCTCAAGACCCTGTGCATCAGGGG
GGACCGCTTTAATAGGCCGCTTCCTGCCATCCGCGCGGGCCTGGAGACGC
TCGAGATCAGCTGCGCCATCTATGCCCAGCCGCTGCCTGCGCTTCCAGGC
GGCCTCAAAACGCTCATCGTC
back to top

Coding sequence (CDS) from alignment at Contig_200:230014..230484-

>mRNA_17201 ID=mRNA_17201|Name=jgi.p|Trimin1|147226|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=471bp|location=Sequence derived from alignment at Contig_200:230014..230484- (Tribonema minus UTEX_B_3156 )
ATGCCGAACAGTGTCAAAAGCCTCCATGTCGCTGGCTCACGCTTCAACAG
CCGGTTCTACACCCTGCCGCGCAACCTGAAGACCCTCTACGTTGCCGGCG
ACAGATTCAACCAACCTGTCTACAGCCTGTCTGCGGGCCTTCGCACACTT
GAGATCAGCGGTGCCGCGTACAACAAGGACCTGCCGGCCCTGCCGGCGGG
GCTCAAGACCCTGCGCATCAGCGGCGACCGCTTCAACAGGTCGCTTCCTG
CCATGCCCGCGGGCCTGGAGACGCTTGAGATCAGTGGCGCCGTGTTCAAC
AGGACACTGCGGGCCCTGCCGGCGGGGCTCAAGACCCTGTGCATCAGGGG
GGACCGCTTTAATAGGCCGCTTCCTGCCATCCGCGCGGGCCTGGAGACGC
TCGAGATCAGCTGCGCCATCTATGCCCAGCCGCTGCCTGCGCTTCCAGGC
GGCCTCAAAACGCTCATCGTC
back to top