mRNA_17108 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|354108 vs. uniprot
Match: A0A836CJG7_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJG7_9STRA) HSP 1 Score: 665 bits (1716), Expect = 6.420e-240 Identity = 380/380 (100.00%), Postives = 380/380 (100.00%), Query Frame = 1
Query: 1 MQSGANLTYSYASEEDDDTAFGDAAITPAPAPSGTVETTVEQLQESLFGARVQKAPSGSPRDAYISLDEWENGQHDVPLLSAGVEGGGIAVHVEALSYAIQTRDRSRKLLLHDISFEARPGEMVAVMGASGAGKSTLLDLIAGRKQEGFVAGTIAFNGELLTNQILRCSAYIEQNIVLLAAFTYCIRXXXXXXXXXXXXXXXXTVRETLHFAAQLRLPESLSAQQRHARVGQIAAMLGLQECMDSVVGDALTRGISGGQMKRLSIGTEIIAVPPLLFLDEPTSGLDSAVSLGIAASLRRLAPRLSTTCXXXXXXXXXXXXXXXXXTAQHHTIMATIHQPSPEVFSQFDKVLLLLGGREVYFGPVAHCHKYFSSLPLGKHG 1140
MQSGANLTYSYASEEDDDTAFGDAAITPAPAPSGTVETTVEQLQESLFGARVQKAPSGSPRDAYISLDEWENGQHDVPLLSAGVEGGGIAVHVEALSYAIQTRDRSRKLLLHDISFEARPGEMVAVMGASGAGKSTLLDLIAGRKQEGFVAGTIAFNGELLTNQILRCSAYIEQNIVLLAAFTYCIRXXXXXXXXXXXXXXXXTVRETLHFAAQLRLPESLSAQQRHARVGQIAAMLGLQECMDSVVGDALTRGISGGQMKRLSIGTEIIAVPPLLFLDEPTSGLDSAVSLGIAASLRRLAPRLSTTCXXXXXXXXXXXXXXXXXTAQHHTIMATIHQPSPEVFSQFDKVLLLLGGREVYFGPVAHCHKYFSSLPLGKHG
Sbjct: 1 MQSGANLTYSYASEEDDDTAFGDAAITPAPAPSGTVETTVEQLQESLFGARVQKAPSGSPRDAYISLDEWENGQHDVPLLSAGVEGGGIAVHVEALSYAIQTRDRSRKLLLHDISFEARPGEMVAVMGASGAGKSTLLDLIAGRKQEGFVAGTIAFNGELLTNQILRCSAYIEQNIVLLAAFTYCIRXXXXXXXXXXXXXXXXTVRETLHFAAQLRLPESLSAQQRHARVGQIAAMLGLQECMDSVVGDALTRGISGGQMKRLSIGTEIIAVPPLLFLDEPTSGLDSAVSLGIAASLRRLAPRLSTTCXXXXXXXXXXXXXXXXXTAQHHTIMATIHQPSPEVFSQFDKVLLLLGGREVYFGPVAHCHKYFSSLPLGKHG 380
BLAST of jgi.p|Trimin1|354108 vs. uniprot
Match: W7TLH8_9STRA (Abc transporter g family member 29 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TLH8_9STRA) HSP 1 Score: 195 bits (495), Expect = 1.900e-51 Identity = 134/377 (35.54%), Postives = 186/377 (49.34%), Query Frame = 1
Query: 97 SGTVETTVEQLQESLFGARVQKAPSGSPRDAYISLDEWENGQ-------HDVPLLSAGV-EGGGIAVHVEALSYAI-------QTRDRSR------------------KLLLHDISFEARPGEMVAVMGASGAGKSTLLDLIAGRKQEGFVAGTIAFNGELLTNQILRCSAYIEQNIVLLAAFTYCIRXXXXXXXXXXXXXXXXTVRETLHFAAQLRLPESLSAQQRHARVGQIAAMLGLQECMDSVVGDALTRGISGGQMKRLSIGTEIIAVPPLLFLDEPTSGLDSAVSLGIAASLRRLAPRLSTTCXXXXXXXXXXXXXXXXXTAQHHTIMATIHQPSPEVFSQFDKVLLLLGGREVYFGPVAHCHKYFSSLPL 1128
+GT +T + + GAR D+++S + E+ + D + S+ + + GGI + L+Y++ Q + SR K LL S PGEM A+MG SGAGK+TLLD++AGRK G + G + FNG+ CS Y+ Q+ V + FT VRETLHFAA LR+ E + QR V + MLGL D +VGD+L +GISGGQ +RL+IG EII +P ++FLDEPT+GLDS +S + A++R LA Q+ T+ TIHQPS EVF+ FDK++L+ G +VYFG KYFSS L
Sbjct: 567 TGTSDTAFIDSRLNSGGARTSNESGRGGHDSFLSQLQQEDREKGSALDVEDFEMRSSNIPKSGGIRLRFRNLTYSLGSRGWHGQRKSESRAGNVPVATPLAKDATGTKKYLLRKASGRVNPGEMCALMGGSGAGKTTLLDVLAGRKTAGLIEGEVFFNGKAGMPSPKLCS-YVTQDNVHIGCFT---------------------VRETLHFAALLRIKEGVRPAQREKMVDDVLGMLGLDSVADVMVGDSLRKGISGGQARRLTIGVEIINLPGMIFLDEPTTGLDSNISYEVMAAVRNLAN-------------------------QNRTVCCTIHQPSIEVFALFDKLILMAKGEQVYFGATHEAVKYFSSPAL 896
BLAST of jgi.p|Trimin1|354108 vs. uniprot
Match: A0A1V9YIE8_9STRA (ATP-binding Cassette (ABC) Superfamily n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YIE8_9STRA) HSP 1 Score: 183 bits (465), Expect = 8.010e-49 Identity = 107/275 (38.91%), Postives = 150/275 (54.55%), Query Frame = 1
Query: 304 TRDRSRKLLLHDISFEARPGEMVAVMGASGAGKSTLLDLIAGRKQEGFVAGTIAFNGELLTNQILRCSAYIEQNIVLLAAFTYCIRXXXXXXXXXXXXXXXXTVRETLHFAAQLRLPESLSAQQRHARVGQIAAMLGLQECMDSVVGDALTRGISGGQMKRLSIGTEIIAVPPLLFLDEPTSGLDSAVSLGIAASLRRLAPRLSTTCXXXXXXXXXXXXXXXXXTAQHHTIMATIHQPSPEVFSQFDKVLLLLGGREVYFGPVAHCHKYFSSLPL 1128
T+ K +L ++ A PG+ + +MG SGAGKS+LLD+++GR G G++ NG T + +CS Y+ Q+ V T V+E L + A LR+ SA QR ARV + LGL C DS +G+A RGISGG+ KRLS+ TE++ P +LF+DEPTSGLDS ++ + L+RLA A+ HT++ATIHQPS ++F+ FD++LLL GG VYFGP A +YFS+ L
Sbjct: 44 TKQAESKTILRNVRGSALPGQFITLMGPSGAGKSSLLDILSGRV--GGFDGSVTVNGHPWTTALTQCSCYVMQDDVFYHTLT---------------------VKEHLLYQADLRMDPQTSASQRVARVDTVLHQLGLSSCADSYIGNASIRGISGGERKRLSLATELLTNPSILFIDEPTSGLDSTMAESVVLELQRLA-------------------------ARGHTVIATIHQPSSQIFALFDRLLLLTGGETVYFGPAAEAVEYFSARGL 270
BLAST of jgi.p|Trimin1|354108 vs. uniprot
Match: A0A7S1THM9_9RHOD (Probable ATP-dependent transporter ycf16 n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1THM9_9RHOD) HSP 1 Score: 179 bits (454), Expect = 5.590e-47 Identity = 110/291 (37.80%), Postives = 162/291 (55.67%), Query Frame = 1
Query: 262 GIAVHVEALSYAIQTRDRSRKLLLHDISFEARPGEMVAVMGASGAGKSTLLDLIAGR--KQEGFV-AGTIAFNGELLTNQILR-CSAYIEQNIVLLAAFTYCIRXXXXXXXXXXXXXXXXTVRETLHFAAQLRLPESLSAQQRHARVGQIAAMLGLQECMDSVVGDALTRGISGGQMKRLSIGTEIIAVPPLLFLDEPTSGLDSAVSLGIAASLRRLAPRLSTTCXXXXXXXXXXXXXXXXXTAQHHTIMATIHQPSPEVFSQFDKVLLLLGGREVYFGPVAHCHKYFSSL 1122
G+ + ++L Y ++ + K+++H IS E RPG+MVA+MG+SGAGK+TLL+L+AGR FV +G+I NG ++ R SAY+EQ+ L A T V E + F+A LRLP+S++ +R RV + LGL +S +G+ + RG+SGG+ KR+++G E++A P L+FLDEPTSGLDS +L + SLR+LA + +++TIHQP +F FD + LL GR +YFGP A YFSS+
Sbjct: 33 GVNLTWDSLGYTVRAKRSMDKVIIHGISGEVRPGQMVAIMGSSGAGKTTLLNLLAGRLTTSSNFVTSGSIRMNGLPRKPRVFRRLSAYVEQDDKLFAELT---------------------VEEQIRFSAYLRLPKSMTNDERETRVNETIQELGLSRVRNSQIGNEIIRGVSGGERKRVNVGVELVADPSLIFLDEPTSGLDSFNALNVMYSLRKLA-------------------------SAGRAVVSTIHQPRSNIFQLFDVLCLLSQGRLMYFGPAAGAITYFSSI 277
BLAST of jgi.p|Trimin1|354108 vs. uniprot
Match: A0A0L0DVJ3_THETB (ABC transporter n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DVJ3_THETB) HSP 1 Score: 179 bits (453), Expect = 1.070e-46 Identity = 114/294 (38.78%), Postives = 164/294 (55.78%), Query Frame = 1
Query: 250 VEGGGIAVHVEALSYAIQTRDRSRKLLLHDISFEARPGEMVAVMGASGAGKSTLLDLIAGRKQEGFVAGTIAFNGELLTN-QILRCSAYIEQNIVLLAAFTYCIRXXXXXXXXXXXXXXXXTVRETLHFAAQLRLPESLSAQQRHARVGQIAAMLGLQECMDSVVGDALTRGISGGQMKRLSIGTEIIAVPPLLFLDEPTSGLDSAVSLGIAASLRRLAPRLSTTCXXXXXXXXXXXXXXXXXTAQHHTIMATIHQPSPEVFSQFDKVLLLLGGREVYFGPVAHCHKYFSSLPL 1128
V+ + + +++++A+ D K +L +S +PGEM+A+MG SGAGKS+LL+++AGR +G V G+IA NG+ L I R ++Y+ Q L+ + T VRETL+++A+ L S+S + + AR+ I LGL DS VG+ L RGISGG+ +R +IG E+++ P LLFLDEPTSGLDSA S + + +RRLA Q TI+A+IHQPS VFS FD+VL L GG+ YFG V + Y S+ L
Sbjct: 22 VDHPSMTLAFDSVTFAVGKGDDC-KTILDSVSGLVKPGEMLAIMGPSGAGKSSLLNILAGRVTDG-VQGSIAVNGQSLQEPDIRRHTSYVMQEDALMGSLT---------------------VRETLNYSAEFSLEASVSREVKTARINTILTDLGLDRVADSKVGNILIRGISGGERRRTAIGAELVSSPALLFLDEPTSGLDSAASFHVMSMMRRLA------------------------RTQSRTIVASIHQPSSAVFSLFDRVLFLSGGKTAYFGSVENLPDYLGSIGL 268
BLAST of jgi.p|Trimin1|354108 vs. uniprot
Match: A0A507FGG7_9FUNG (ABC transporter domain-containing protein n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FGG7_9FUNG) HSP 1 Score: 178 bits (451), Expect = 1.140e-46 Identity = 114/290 (39.31%), Postives = 160/290 (55.17%), Query Frame = 1
Query: 262 GIAVHVEALSYAIQTRD-RSRKLLLHDISFEARPGEMVAVMGASGAGKSTLLDLIAGRKQE-GFVAGTIAFNGELLTNQILRCSAYIEQNIVLLAAFTYCIRXXXXXXXXXXXXXXXXTVRETLHFAAQLRLPESLSAQQRHARVGQIAAMLGLQECMDSVVGDALTRGISGGQMKRLSIGTEIIAVPPLLFLDEPTSGLDSAVSLGIAASLRRLAPRLSTTCXXXXXXXXXXXXXXXXXTAQHHTIMATIHQPSPEVFSQFDKVLLLLGGREVYFGPVAHCH-KYFSSL 1122
G+ + + LSY+I R + K LL IS +PGE++AVMG SGAGKST LD++AGRK + G G I +G + + S+Y+ QN ++ FT VRET+ +A +L LP S++ ++R +V ++ + GL +C DS VGD LTRGISGG+ +RLSI +++ P ++FLDEPTSGLDSA S + ++R LA R T ++ +IHQPSP + FDKVL L GR VYFGP A +YF S+
Sbjct: 23 GLTLTFKDLSYSIVDRTGKESKYLLEGISGCVKPGEVLAVMGPSGAGKSTFLDVVAGRKGKIGTQHGQIMLDGS--ERPMKKYSSYVTQNDAVIGCFT---------------------VRETIMWAVELNLPSSVTKRERLDKVQELLSQFGLTKCADSKVGDLLTRGISGGEKRRLSIAIQLVKEPKVIFLDEPTSGLDSAASFKVMEAIRDLARRRGCT------------------------VVCSIHQPSPSTYELFDKVLFLARGRTVYFGPNAGADAEYFKSI 265
BLAST of jgi.p|Trimin1|354108 vs. uniprot
Match: W7TH06_9STRA (Atp-binding cassette superfamily n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TH06_9STRA) HSP 1 Score: 179 bits (454), Expect = 4.570e-46 Identity = 115/287 (40.07%), Postives = 153/287 (53.31%), Query Frame = 1
Query: 262 GIAVHVEALSYAIQTRDRSRKLLLHDISFEARPGEMVAVMGASGAGKSTLLDLIAGRKQEGFVAGTIAFNGELLTNQILRCSAYIEQNIVLLAAFTYCIRXXXXXXXXXXXXXXXXTVRETLHFAAQLRLPESLSAQQRHARVGQIAAMLGLQECMDSVVGDALTRGISGGQMKRLSIGTEIIAVPPLLFLDEPTSGLDSAVSLGIAASLRRLAPRLSTTCXXXXXXXXXXXXXXXXXTAQHHTIMATIHQPSPEVFSQFDKVLLLLGGREVYFGPVAHCHKYFSSL 1122
G V+ E L T + RK LL I+ PGE+ VMG SGAGKSTLLD +AGR ++G ++G I FNG ++ SAY+ Q+ V + T V ETL FAAQLRL + +R +R+ ++ +LGL C+ S+VGDA RGISGGQ+KRLSI EI+ +P L+FLDEPTSGLDS ++ + RLA Q+ TI+ATIHQPS E ++ KV+L+ GR ++ GP YF SL
Sbjct: 8 GAEVNNEILKRFSPTTEFDRKELLKHITMTVLPGEIAFVMGPSGAGKSTLLDALAGRIKDGVMSGHIYFNGRPRSSDFYSNSAYVRQDDVHIPNLT---------------------VGETLFFAAQLRLGGEYTINERQSRIKAVSDLLGLNSCILSLVGDAGMRGISGGQLKRLSIAVEIMNMPSLIFLDEPTSGLDSVMAHDVMTFTNRLAD-------------------------QNRTILATIHQPSSETYALASKVILVSAGRIMFCGPANEAQSYFISL 248
BLAST of jgi.p|Trimin1|354108 vs. uniprot
Match: UPI001C4AD79E (ABC transporter G family member 22-like isoform X2 n=3 Tax=Zingiber officinale TaxID=94328 RepID=UPI001C4AD79E) HSP 1 Score: 173 bits (438), Expect = 1.360e-45 Identity = 106/271 (39.11%), Postives = 143/271 (52.77%), Query Frame = 1
Query: 316 SRKLLLHDISFEARPGEMVAVMGASGAGKSTLLDLIAGRKQEGFVAGTIAFNGELLTNQILRCSAYIEQNIVLLAAFTYCIRXXXXXXXXXXXXXXXXTVRETLHFAAQLRLPESLSAQQRHARVGQIAAMLGLQECMDSVVGDALTRGISGGQMKRLSIGTEIIAVPPLLFLDEPTSGLDSAVSLGIAASLRRLAPRLSTTCXXXXXXXXXXXXXXXXXTAQHHTIMATIHQPSPEVFSQFDKVLLLLGGREVYFGPVAHCHKYFSSLPL 1128
+ K +L I+ ARPGE++AVMG SG+GK+TLL L+ GR V G+I +N E + + ++ Q+ VL A T VRETL +AA LRLP ++S QQ+ R + LGLQ C D++VG ++ RG+SGG+ KR+ IG EI+ P LLFLDEPTSGLDS +L I L +A T++ TIHQPS +F +FDK++LL G YFG + YFSS L
Sbjct: 29 TEKDILQGITGSARPGELLAVMGPSGSGKTTLLSLLGGRTTANIVQGSITYNDEPYSKSLKGRIGFVTQDDVLFAHLT---------------------VRETLTYAALLRLPRTMSRQQKEERAVNVITELGLQGCQDTIVGGSIIRGVSGGERKRVCIGNEILVNPSLLFLDEPTSGLDSTTALRIVQVLTEIAE-------------------------SGKTVVTTIHQPSSRLFHRFDKLILLGKGSLFYFGRASKAMSYFSSTGL 253
BLAST of jgi.p|Trimin1|354108 vs. uniprot
Match: A0A5K0WJL0_9MAGN (ABC transporter domain-containing protein (Fragment) n=1 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K0WJL0_9MAGN) HSP 1 Score: 169 bits (428), Expect = 2.400e-45 Identity = 101/269 (37.55%), Postives = 149/269 (55.39%), Query Frame = 1
Query: 316 SRKLLLHDISFEARPGEMVAVMGASGAGKSTLLDLIAGRKQEGFVAGTIAFNGELLTNQILRCSAYIEQNIVLLAAFTYCIRXXXXXXXXXXXXXXXXTVRETLHFAAQLRLPESLSAQQRHARVGQIAAMLGLQECMDSVVGDALTRGISGGQMKRLSIGTEIIAVPPLLFLDEPTSGLDSAVSLGIAASLRRLAPRLSTTCXXXXXXXXXXXXXXXXXTAQHHTIMATIHQPSPEVFSQFDKVLLLLGGREVYFGPVAHCHKYFSSL 1122
+ K ++ I+ RPGEM+A++G SG+GK+TLL +AGR Q+G +G+I +NG+ + + R + ++ Q+ V+ TV ETL F+A LRLP +LS +QR + + LGL +C +S++G AL RG+SGG+ KR+SIG E++ P LL LDEPTSG+DS +L I A+L+ LA T++ TIHQPS +F FD++LLL G+ +Y G + YFSSL
Sbjct: 32 AEKTIIEGITGVVRPGEMLAMLGPSGSGKTTLLTALAGR-QQGKASGSITYNGQPFSASVKRMTGFVSQDDVM---------------------YPHLTVMETLVFSALLRLPNTLSKEQRMEQAEHVMQELGLSKCRNSIIGGALVRGVSGGERKRVSIGQEMLINPSLLLLDEPTSGMDSTTALRIVATLQGLA-------------------------RGGRTVVTTIHQPSSRLFHMFDRILLLSEGKCIYGGKASEAMGYFSSL 253
BLAST of jgi.p|Trimin1|354108 vs. uniprot
Match: A0A804K2W2_MUSAM (ABC transporter domain-containing protein n=4 Tax=Musa TaxID=4640 RepID=A0A804K2W2_MUSAM) HSP 1 Score: 174 bits (441), Expect = 3.510e-45 Identity = 106/269 (39.41%), Postives = 145/269 (53.90%), Query Frame = 1
Query: 316 SRKLLLHDISFEARPGEMVAVMGASGAGKSTLLDLIAGRKQEGFVAGTIAFNGELLTNQILRCSAYIEQNIVLLAAFTYCIRXXXXXXXXXXXXXXXXTVRETLHFAAQLRLPESLSAQQRHARVGQIAAMLGLQECMDSVVGDALTRGISGGQMKRLSIGTEIIAVPPLLFLDEPTSGLDSAVSLGIAASLRRLAPRLSTTCXXXXXXXXXXXXXXXXXTAQHHTIMATIHQPSPEVFSQFDKVLLLLGGREVYFGPVAHCHKYFSSL 1122
+ K +L+ I+ A PGE++A+MG SG+GK+TLL L+ GR + V GTI +N E T + R ++ Q+ VL A T VRETL +AA LRLP +S QQ+ R + LGL+ C D+++G + RG+SGG+ KR+SIG EII P LL LDEPTSGLDS +L I LR +A T++ TIHQPS +F +FDK++LL G +YFG + YFSS+
Sbjct: 166 TEKDILNGITGSASPGELLALMGPSGSGKTTLLSLLGGRIRGNLVEGTITYNDEPYTKSLKRRIGFVTQDDVLFAHLT---------------------VRETLTYAALLRLPNKMSRQQKEERAMDVIYELGLERCQDTMIGGSFVRGVSGGERKRVSIGNEIIINPSLLLLDEPTSGLDSTTALRIMQVLRDIAEA-------------------------GRTVLTTIHQPSSRLFHRFDKLILLGKGSLLYFGKASEALVYFSSI 388 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354108 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_17108 ID=mRNA_17108|Name=jgi.p|Trimin1|354108|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1143bp|location=Sequence derived from alignment at Contig_209:146598..154274- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCAATCGGGGGCAAACCTTACTTACTCATACGCATCCGAAGAAGACGAback to top protein sequence of jgi.p|Trimin1|354108 >Trimin1|354108|estExt_Genemark1.C_Ctg_2090019 ID=Trimin1|354108|estExt_Genemark1.C_Ctg_2090019|Name=jgi.p|Trimin1|354108|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=381bp MQSGANLTYSYASEEDDDTAFGDAAITPAPAPSGTVETTVEQLQESLFGAback to top mRNA from alignment at Contig_209:146598..154274- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_17108 ID=mRNA_17108|Name=jgi.p|Trimin1|354108|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=7677bp|location=Sequence derived from alignment at Contig_209:146598..154274- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_209:146598..154274- >mRNA_17108 ID=mRNA_17108|Name=jgi.p|Trimin1|354108|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1143bp|location=Sequence derived from alignment at Contig_209:146598..154274- (Tribonema minus UTEX_B_3156 )back to top |