mRNA_17052 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|178095 vs. uniprot
Match: A0A835Z9Q3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Q3_9STRA) HSP 1 Score: 458 bits (1178), Expect = 3.480e-163 Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 1
Query: 1 MYSTTIVYCPEQKLVYVDNVKAGSSTISAILYRHFNCVSRNHHTWAAEHIRQEKCEGLSAEACDGMRAKTDWLTKDELTGTTFFSAVREPLERFISGYKQAVAATVEIADWDISEYIQHYNTSEINQHTQTQVRRLSGRDASGKQVPMHFIASLETLGHDLSLLLAQLGLPPVDEFPKLRVAAQDPSKAALDTTLTTEQIRQLCQHLMQDYVCFGYPLPMECR 669
MYSTTIVYCPEQKLVYVDNVKAGSSTISAILYRHFNCVSRNHHTWAAEHIRQEKCEGLSAEACDGMRAKTDWLTKDELTGTTFFSAVREPLERFISGYKQAVAATVEIADWDISEYIQHYNTSEINQHTQTQVRRLSGRDASGKQVPMHFIASLETLGHDLSLLLAQLGLPPVDEFPKLRVAAQDPSKAALDTTLTTEQIRQLCQHLMQDYVCFGYPLPMECR
Sbjct: 1 MYSTTIVYCPEQKLVYVDNVKAGSSTISAILYRHFNCVSRNHHTWAAEHIRQEKCEGLSAEACDGMRAKTDWLTKDELTGTTFFSAVREPLERFISGYKQAVAATVEIADWDISEYIQHYNTSEINQHTQTQVRRLSGRDASGKQVPMHFIASLETLGHDLSLLLAQLGLPPVDEFPKLRVAAQDPSKAALDTTLTTEQIRQLCQHLMQDYVCFGYPLPMECR 223
BLAST of jgi.p|Trimin1|178095 vs. uniprot
Match: A0A835ZDX2_9STRA (Protein kinase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDX2_9STRA) HSP 1 Score: 269 bits (687), Expect = 2.150e-80 Identity = 129/225 (57.33%), Postives = 160/225 (71.11%), Query Frame = 1
Query: 1 MYSTTIVYCPEQKLVYVDNVKAGSSTISAILYRHFNCVSRNHHTWAAEHIRQEKC--EGLSAEACDGMRAKTDWLTKDELTGTTFFSAVREPLERFISGYKQAVAATVEIADWDISEYIQHYNTSEINQHTQTQVRRLSGRDASGKQVPMHFIASLETLGHDLSLLLAQLGLPPVDEFPKLRVAAQDPSKAALDTTLTTEQIRQLCQHLMQDYVCFGYPLPMECR 669
M +T I+YC EQ L YV N KAGSST +++L HF+C S H W EHI+Q +C GLS+E C+ RA+TDWL ++G FFS VREP+ RF SGY+QAV +T E+ W ISEY+ Y +N+HT TQ R LSGRDA G+QVPMHFIASLE L HDL+LL +LGLPP+ +P R DP+KA LDTTLT +Q+R+LC HLMQD+VCFGY LP EC+
Sbjct: 823 MEATYIIYCREQMLTYVLNQKAGSSTTASVLNEHFHCTSTQH-DWVPEHIKQRRCYDSGLSSEDCERRRARTDWLDDGSISGMNFFSVVREPIARFKSGYQQAVTSTPELQGWTISEYLAEYRKFPVNEHTHTQARNLSGRDALGRQVPMHFIASLENLEHDLTLLWDELGLPPMAHYPHARSKEDDPNKAVLDTTLTADQMRELCDHLMQDFVCFGYTLPEECQ 1046
BLAST of jgi.p|Trimin1|178095 vs. uniprot
Match: A0A836CHK8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHK8_9STRA) HSP 1 Score: 247 bits (631), Expect = 3.100e-77 Identity = 121/222 (54.50%), Postives = 153/222 (68.92%), Query Frame = 1
Query: 10 TTIVYCPEQKLVYVDNVKAGSSTISAILYRHFNCVSRNHHTW--AAEHIRQEKCEGLSAEACDGMRAKTDWLTKDELTGTTFFSAVREPLERFISGYKQAVAATVEIADWDISEYIQHYNTSEINQHTQTQVRRLSGRDASGKQVPMHFIASLETLGHDLSLLLAQLGLPPVDEFPKLRVAAQDPSKAALDTTLTTEQIRQLCQHLMQDYVCFGYPLPMECR 669
T +V+CP+ LVYVDNVKAGS+T+ IL R +NC H W A + + +C+GLS + C R++TDWL L+G TFFS VREP+ RF SGYKQAV ++A+ I+EY++ Y +N+HT TQ RRLSG DA +QVPMHFIASLE L HD++ L A+LGL P+ FP++R A D SKAALDT LT Q+R LC HL QD+VCFGY LP CR
Sbjct: 83 TDVVWCPKLNLVYVDNVKAGSTTMMGILSREYNCTWHTHTRWPPAQARLARAQCKGLSHDECQDRRSRTDWLDDAVLSGATFFSIVREPIARFQSGYKQAVTMDAKLANLTIAEYVEEYKLKYLNEHTLTQSRRLSGWDAHNRQVPMHFIASLENLEHDMAALWARLGLAPLAAFPRMRAAEMDASKAALDTRLTPVQVRVLCAHLAQDFVCFGYALPEACR 304
BLAST of jgi.p|Trimin1|178095 vs. uniprot
Match: A0A835YYH3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYH3_9STRA) HSP 1 Score: 237 bits (605), Expect = 9.480e-76 Identity = 117/228 (51.32%), Postives = 151/228 (66.23%), Query Frame = 1
Query: 4 YSTTIVYCPEQKLVYVDNVKAGSSTISAILYRHFNCVSRNHHTWAAEHIRQEKCEGLSAEACDGMRAKTDWLTKDELTGTT---FFSAVREPLERFISGYKQAVAATVEIADWDISEYIQHYNTSEINQHTQTQVRRLSGRDASGKQVPMHFIASLETLGHDLSLLLAQLGLPPVDEFPKLRVAAQDP---SKAALDTTLTTEQIRQLCQHLMQDYVCFGYPLPMECR 669
+ T +V C + LVY+DNVKAGS+ + A+L F C H+ WA + + KC GL C RA T W + +TG FFS VREP++RF+SG+KQA+ + + IS +I+ Y + +N+HTQTQ RRLSGRD +G QVPMHFIAS+E L HD++ L A GLPPVDEFP++R AA+DP S+A L T LTT +R LC HLMQD+VCFGY LP ECR
Sbjct: 13 FGTDMVVCKKAGLVYIDNVKAGSTAVQAVLGTRFGCTWTRHNNWAPPELSRAKCWGLKPRKC---RATTQWFEDETVTGDPGMLFFSVVREPIDRFVSGFKQALLQDKALRNETISSFIRSYQYASMNEHTQTQARRLSGRDKAGNQVPMHFIASMENLEHDVAALFAHRGLPPVDEFPRMRAAARDPFKASRAELGTALTTADVRLLCAHLMQDFVCFGYLLPQECR 237
BLAST of jgi.p|Trimin1|178095 vs. uniprot
Match: A0A836CGN9_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGN9_9STRA) HSP 1 Score: 216 bits (549), Expect = 6.910e-61 Identity = 102/204 (50.00%), Postives = 136/204 (66.67%), Query Frame = 1
Query: 64 AGSSTISAILYRHFNCVSRNHHTWAAEHIR--QEKCEGLSAEACDGMRAKTDWLTKDELTGTTFFSAVREPLERFISGYKQAVAATVEIADWDISEYIQHYNTSEINQHTQTQVRRLSGRDASGKQVPMHFIASLETLGHDLSLLLAQLGLPPVDEFPKLRVAAQDPSKAALDTTLTTEQIRQLCQHLMQDYVCFGYPLPMECR 669
AGS+TI IL R +NC H W E R +++C G E C R++TDWL L FFS VREP+ RF+SGYKQAVAA ++ +W +++Y++ Y +N+HT TQ RR+ DA G+Q+PMHFIASLE L DL+LL A LG+PP++ F ++R A D K L+T LT +Q+R+LC HL QD++CFGYPLP ECR
Sbjct: 1289 AGSTTIMGILERDYNCTWHTHMEWPEEQARIARQRCVGAMPEECFQKRSRTDWLDDSVLERAVFFSVVREPVSRFVSGYKQAVAAYEDVGNWTMTQYMEAYRVRSVNEHTLTQTRRIGVDDAHGRQIPMHFIASLENLEEDLALLWAHLGVPPIENFLRMRSAQTDSRKYHLETRLTADQLRELCWHLGQDFLCFGYPLPSECR 1492
BLAST of jgi.p|Trimin1|178095 vs. uniprot
Match: A0A835YMP6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMP6_9STRA) HSP 1 Score: 194 bits (493), Expect = 1.130e-56 Identity = 103/222 (46.40%), Postives = 136/222 (61.26%), Query Frame = 1
Query: 4 YSTTIVYCPEQKLVYVDNVKAGSSTISAILYRHFNCVSRNHHTWAAEHIRQEKCEGLSAEACDGMRAKTDWLTKDELTGTTFFSAVREPLERFISGYKQAVAAT-VEIADWDISEYIQHYNTSEINQHTQTQVRRLSGRDASGKQVPMHFIASLETLGHDLSLLLAQLGLPPVDEFPKLRVAAQDPSKAALDTTLTTEQIRQLCQHLMQDYVCFGYPLPMEC 666
Y T ++YCP+ LVYV NVKAGSSTI+A+L +F C S GL+ C +RA+T WL D ++G FFS VREP+ RF SGY QAV+ + + EY++ + RLSG DA+G+QVPMHF+ASL L DL L + LGLPP+ +FP R AA DP+KAALDT+L+ +++ +C HLMQD++CFGY LP EC
Sbjct: 220 YPTYVIYCPQVNLVYVGNVKAGSSTINAVLSSNFKCTS-----------------GLTEAECRKIRARTTWLDNDLISGMLFFSVVREPIARFKSGYMQAVSVPDTPLWGTPLKEYLELF--------------RLSGSDANGRQVPMHFVASLGNLEADLQTLWSTLGLPPLRDFPHEREAAHDPNKAALDTSLSRAELQDVCAHLMQDFICFGYRLPPEC 410
BLAST of jgi.p|Trimin1|178095 vs. uniprot
Match: A0A835ZE79_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE79_9STRA) HSP 1 Score: 112 bits (280), Expect = 4.770e-25 Identity = 72/231 (31.17%), Postives = 98/231 (42.42%), Query Frame = 1
Query: 154 QEKCEGLSAEACDGMRAKTDWLTKDELTGTTFFSAVREPLERFISGYKQAVAATVE-IADWDISEYIQHYN-----------------------------------------------------------TSEINQHTQTQVRRLSGRDASGKQVPMHFIASLETLGHDLSLLLAQLGLPPVDEFPKLRVAAQDPSKAALDTTLTTEQIRQLCQHLMQDYVCFGYPLPMEC 666
Q GL+ C +RA+TDWL D ++G FFS VREP+ RF SGY +AV+A ++ + EY++HY IN+HT TQ R LSGRDA+ KQ ++ R AA+DP K LDT++T +++++C HLMQD+VCFGYPLP EC
Sbjct: 2 QANLVGLTEAECRKIRARTDWLDDDLMSGMLFFSVVREPIARFKSGYLEAVSAPDNRLSGMPLKEYLEHYRCRRCDICRRLLLFYHAPQAAAVAPYAASLLLRHASPDAAAAPPALPLPPRLPQRLRRWPVGAINEHTHTQARSLSGRDANNKQ-----------------------------DYTHAREAARDPIKTTLDTSMTPAELQEVCAHLMQDFVCFGYPLPPEC 203
BLAST of jgi.p|Trimin1|178095 vs. uniprot
Match: A0A7S3T7K1_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3T7K1_EMIHU) HSP 1 Score: 53.9 bits (128), Expect = 6.530e-5 Identity = 51/184 (27.72%), Postives = 73/184 (39.67%), Query Frame = 1
Query: 1 MYSTTIVYCPEQKLVYVDNVKAGSSTISAILYRH--------FNCVSRNHHTWAAEHIRQEKCEGLSAEACDGMRAKTDWLTKDELTGTTFFSAVREPLERFISGYKQAVAATVEIADWDISEYIQHYNTSE--INQHTQTQVRRLSGRDASGKQVPMHFIASLETLGHDLSLLLAQLGLPPVD 522
M+S ++ + VY+DNVKAGSSTI + + N V C C R T L + FS VR+PL +F SG +Q A+ ++ SE +N+H Q RL G DA G VP+ + LE D ++ +L P +D
Sbjct: 67 MHSVDVLLVEKAGFVYLDNVKAGSSTIRRTVGDNRLWCQGGVVNGVGCTERFGGGGLTAPRTCCATGDRGCS--RLTTACLRSADARRLLVFSFVRDPLAKFESGLRQMFASYPAWEKLGADAILRRQLLSERWLNEHLQPSWWRLCGADADGNFVPLDRVGRLEEFEEDWKSIIERL--PHID 246 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|178095 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_17052 ID=mRNA_17052|Name=jgi.p|Trimin1|178095|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=672bp|location=Sequence derived from alignment at Contig_165:268103..270610- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGTATTCCACCACCATCGTGTACTGTCCAGAGCAAAAGCTGGTGTACGTback to top protein sequence of jgi.p|Trimin1|178095 >Trimin1|178095|e_gw1.165.22.1 ID=Trimin1|178095|e_gw1.165.22.1|Name=jgi.p|Trimin1|178095|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=224bp MYSTTIVYCPEQKLVYVDNVKAGSSTISAILYRHFNCVSRNHHTWAAEHIback to top mRNA from alignment at Contig_165:268103..270610- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_17052 ID=mRNA_17052|Name=jgi.p|Trimin1|178095|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2508bp|location=Sequence derived from alignment at Contig_165:268103..270610- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_165:268103..270610- >mRNA_17052 ID=mRNA_17052|Name=jgi.p|Trimin1|178095|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=672bp|location=Sequence derived from alignment at Contig_165:268103..270610- (Tribonema minus UTEX_B_3156 )back to top |