mRNA_17050 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|178111
Unique Name	mRNA_17050
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|178111 vs. uniprot
Match: A0A835ZBA9_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBA9_9STRA)

HSP 1 Score: 264 bits (675), Expect = 1.130e-86
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 1

Query:    1 MAATCNNKPADIVTLLLEGANMEGRSSGGYTPLVFAARLGHAEVVKLLLDXXXXXXXXXXXXXXXXXXXXXXXXXXICRQVADXXXXXXXXXXXRNRAGFGPLLAAVSEEHAPVVEALLKHGADANAVTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTPLEMARICRRAPVAAMLEQHAAAATKGVGALPGTDPETVPEKNGSEMQLDQPL 660
            MAATCNNKPADIVTLLLEGANMEGRSSGGYTPLVFAARLGHAEVVKLLLDXXXXXXXXXXXXXXXXXXXXXXXXXXICRQVADXXXXXXXXXXXRNRAGFGPLLAAVSEEHAPVVEALLKHGADANAVTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTPLEMARICRRAPVAAMLEQHAAAATKGVGALPGTDPETVPEKNGSEMQLDQPL
Sbjct:    1 MAATCNNKPADIVTLLLEGANMEGRSSGGYTPLVFAARLGHAEVVKLLLDXXXXXXXXXXXXXXXXXXXXXXXXXXICRQVADXXXXXXXXXXXRNRAGFGPLLAAVSEEHAPVVEALLKHGADANAVTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTPLEMARICRRAPVAAMLEQHAAAATKGVGALPGTDPETVPEKNGSEMQLDQPL 220

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|178111 vs. uniprot

BLAST of jgi.p|Trimin1|178111 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835ZBA9_9STRA	1.130e-86	100.00	Ankyrin repeat-containing domain protein n=1 Tax=T...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_165	contig	Contig_165:259482..262188 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|178111\|e_gw1.165.21.1
Hectar predicted targeting category	other localisation
Ec32 ortholog description	Ankyrin repeat
Ec32 ortholog	Ec-21_003720.1
TranscriptId	178433
Track	FilteredModels1
ProteinId	178111

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|178111	gene_17050	Tribonema minus UTEX_B_3156	gene	Contig_165 259482..262188 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|178111	Trimin1\|178111\|e_gw1.165.21.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_165 259482..262188 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_17050_4	exon_17050_4	Tribonema minus UTEX_B_3156	exon	Contig_165 259482..259718 -
exon_17050_3	exon_17050_3	Tribonema minus UTEX_B_3156	exon	Contig_165 260496..260673 -
exon_17050_2	exon_17050_2	Tribonema minus UTEX_B_3156	exon	Contig_165 261375..261548 -
exon_17050_1	exon_17050_1	Tribonema minus UTEX_B_3156	exon	Contig_165 262115..262188 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_17050	CDS_17050	Tribonema minus UTEX_B_3156	CDS	Contig_165 262115..262188 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_165:259482..262188-
coding sequence from alignment at Contig_165:259482..262188-

spliced messenger RNA

>mRNA_17050 ID=mRNA_17050|Name=jgi.p|Trimin1|178111|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=663bp|location=Sequence derived from alignment at Contig_165:259482..262188- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGCAACATGTAACAACAAGCCTGCTGATATTGTAACATTATTGCT
GGAAGGCGCCAACATGGAAGGACGGTCCAGTGGCGGCTACACCCCCCTGG
TGTTTGCGGCACGTTTGGGGCATGCGGAAGTTGTCAAATTGCTGCTCGAC
AGAGGAGCCAACATTGATGCAGCGACGGATGTGGGAGACACTGCATTGCT
GCTTGCGAGCAAATGGGGGCATGCAGACATCTGCAGGCAAGTCGCTGACC
TTCTGCTGGACAGAGGAGCGTCACTGACGGTACGAAATCGCGCAGGCTTT
GGGCCACTGCTGGCCGCAGTGAGCGAAGAGCATGCACCTGTGGTGGAGGC
GCTGCTGAAGCACGGCGCGGACGCCAATGCAGTCACCTGCAACGGAGCGT
CGGCACTGTGCATGGCAGCTCAAAAGGGCTACCAGGACATTGCCCGGCTG
CTGCTGCAGGGGGGCGCAGACCCCTCATTGCGCGACTTCAGCGGCAAGAC
GCCGTTAGAAATGGCGCGCATCTGCAGGCGTGCACCTGTAGCTGCGATGC
TGGAACAGCACGCAGCGGCTGCGACTAAAGGCGTGGGCGCGCTGCCAGGG
ACCGATCCAGAAACTGTTCCTGAGAAGAACGGTTCTGAAATGCAGCTCGA
CCAACCCCTATGA

protein sequence of jgi.p|Trimin1|178111

>Trimin1|178111|e_gw1.165.21.1 ID=Trimin1|178111|e_gw1.165.21.1|Name=jgi.p|Trimin1|178111|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=221bp
MAATCNNKPADIVTLLLEGANMEGRSSGGYTPLVFAARLGHAEVVKLLLD
RGANIDAATDVGDTALLLASKWGHADICRQVADLLLDRGASLTVRNRAGF
GPLLAAVSEEHAPVVEALLKHGADANAVTCNGASALCMAAQKGYQDIARL
LLQGGADPSLRDFSGKTPLEMARICRRAPVAAMLEQHAAAATKGVGALPG
TDPETVPEKNGSEMQLDQPL*

mRNA from alignment at Contig_165:259482..262188-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_17050 ID=mRNA_17050|Name=jgi.p|Trimin1|178111|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2707bp|location=Sequence derived from alignment at Contig_165:259482..262188- (Tribonema minus UTEX_B_3156 )
ATGGCTGCAACATGTAACAACAAGCCTGCTGATATTGTAACATTATTGCT
GGAAGGCGCCAACATGGAAGGACGGTGAGCCAACATTCGTTGCTGCTGTT
CTGGCGACCTCATCACATGGCAACCTCATGTGCTGATGATGTGAGCAATT
CTTTTCAAGGAGGCACTGCAGCGAATGACATGTTCGCTCATGCAAACATC
CAAGTACTGCCAGCTGCTACGGGCCCCTGAACGCACCAGCCTCATGGTGC
AGATTTGAACAGAAGTGCTGAAGCTCCCAGCAGCCGAGTACTCAGTCAAA
ACACCTGCATTAAGCTGAAATATAACACTGTTCAAGTTCAAAAATTGCTT
TGGCGCAAGCTCTGGTGTCCATTTTTGCTACTAATAGGTAGCATGTAATC
AGCCTTTGTCTGGGTCAGTGGCGTGCGTGAGTAACAAAAAAAAATCTGGC
GGTGATGCATATGCTTGCCTGTTCTTAGGCTACAATGGGGCACTGGTGTG
ACTTGGCAGGGGAGGGAGTGGCGGATGCAGAACATCAGTTAAGACATGCT
TGACGCACCGCAACTGCATGCCACTGAGCAACTGTGGCCATCTCAGCTCT
CGCGTATTCACGTTTTTGTCAATTGCAACAAACTTGCCAGGTCCAGTGGC
GGCTACACCCCCCTGGTGTTTGCGGCACGTTTGGGGCATGCGGAAGTTGT
CAAATTGCTGCTCGACAGAGGAGCCAACATTGATGCAGCGACGGATGTGG
GAGACACTGCATTGCTGCTTGCGAGCAAATGGGGGCATGCAGACATCTGC
AGGCAAGTCGCTGAGTGTGTCGTGGTGCATTAAGCATCAGCATATTGCAG
TAATCCTCGAAAACATCAGACTGAACCCGCAGTAGCTCGTGGGAGCTAAA
TCACTCGCCTCAAGTCTGTGAAGCAGAGGCAGAAGCTGTGTGTTTAGCTT
GTACCTCCATTAAGGTGTTTCCGTGTATGCTGGGACGGACACGAGTGTCG
TGACCCGCTGCGCCCCAGTGGTATGCAAAAGTGTGTTCAGTGACCTTATT
CACGAACCAGTAATACATGGCGGAACTGATTGAAGCGTCTGCTGGCATTC
TTGCTTGAGTGGTGCACTGTGCAAAGCGCAGCGAGAAAATCATGAGGGGG
TGGATTCGGGTGCGAGAAAATCATGAGGGGGTGGATTCGGGTAATGTCAG
AACACCGTCATTGCACAGCTCTGTGAGCCTCATTGATGGTACATATGCCT
TCCTTCCTCTTGTCAATGGTTCTCGAGAAGCCAACACGACAATTAACAAT
CACCTCTGTTCAGTTTTATCGCCGCTGCGGTGATGGCAAATCGTTTGCAG
CAACTAGGCGCCCGGGCCATGGTTTTCATTCATGAGTGTGCAATACGGTT
GTCCAGCCGGCCAGCAAGTGGTGCACCTCAAACGCACGCCATGAACGCCT
ATAGTGCCGACAAGCACCAGATCTCGTGCTTGCATTCATCACGGGATTAC
TTGGTGTCTTTGCAGCCTTCTGCTGGACAGAGGAGCGTCACTGACGGTAC
GAAATCGCGCAGGCTTTGGGCCACTGCTGGCCGCAGTGAGCGAAGAGCAT
GCACCTGTGGTGGAGGCGCTGCTGAAGCACGGCGCGGACGCCAATGCAGT
CACCTGCAACGGAGCGTCGGCACTGTGCATGGCAGCTCAAAAGGTCAGGC
AGTTTTCTTCACAACAAACTAGAAGTATGTAAATTAGCACTTGGACACAT
TCTGAAGGCTGCTGAGTGTCACTGGGTCATGCACCCAGCTCAGGTGCACA
GGGGAGGGGGCTGTGGCTTTGTCATTCTGCTGACAGCACATAGTTTCCAG
TGCAGTGCATTTGGCCTTCAAACAAAGAGGCATATGCAGCAGACAACAAA
GGCAGTGATGGGTTCACTGCTGCAGCAAAGTGCTCACGTAGTGTTTCGAG
TGCTCTCAACAAGTATGCACTATTACTTAGCCGCTCTCGACAGCCTGTTT
GTTCCATCTGACACTTGGTGTTGGTCAGTCAAGCATCCACTTAGCCCTCT
CCTTTTGTGTGAGGTTCATGTGCATCTGCAACAGCGCTGTAGCATTATGC
AAGTCGTTCCCTTCGTTGGGACGAAATAATGTAATGAATGGGTGCATGAG
GACGTTGACGGAGAGTGGAAATGTAATGGTTGGTGCAAGTACTGTGCATG
TAATGATTGCCTCAAATGCTTGAAGCATCGGTCTCCTCAGGACTGGTGAT
GAACAGCACTACCTTTGTTACCCCGGGCAAGCCCCTGTGCAGCTCCAGCT
ACATTCAGACATACATCTACACAACTTCGAAGTAAATGCATTCACCAGAG
AGACAGCACAGACATCATAAGCGCTGCCACCATCCTCCTTACAGTAACAC
GCATCACACGAGGCCTGCAGCGCTCACAGCCATTCCGGCATCGCATCGTG
CCCTCTGCTCTCTTTGGCAGGGCTACCAGGACATTGCCCGGCTGCTGCTG
CAGGGGGGCGCAGACCCCTCATTGCGCGACTTCAGCGGCAAGACGCCGTT
AGAAATGGCGCGCATCTGCAGGCGTGCACCTGTAGCTGCGATGCTGGAAC
AGCACGCAGCGGCTGCGACTAAAGGCGTGGGCGCGCTGCCAGGGACCGAT
CCAGAAACTGTTCCTGAGAAGAACGGTTCTGAAATGCAGCTCGACCAACC
CCTATGA

Coding sequence (CDS) from alignment at Contig_165:259482..262188-

>mRNA_17050 ID=mRNA_17050|Name=jgi.p|Trimin1|178111|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=663bp|location=Sequence derived from alignment at Contig_165:259482..262188- (Tribonema minus UTEX_B_3156 )
ATGGCTGCAACATGTAACAACAAGCCTGCTGATATTGTAACATTATTGCT
GGAAGGCGCCAACATGGAAGGACGGTCCAGTGGCGGCTACACCCCCCTGG
TGTTTGCGGCACGTTTGGGGCATGCGGAAGTTGTCAAATTGCTGCTCGAC
AGAGGAGCCAACATTGATGCAGCGACGGATGTGGGAGACACTGCATTGCT
GCTTGCGAGCAAATGGGGGCATGCAGACATCTGCAGGCAAGTCGCTGACC
TTCTGCTGGACAGAGGAGCGTCACTGACGGTACGAAATCGCGCAGGCTTT
GGGCCACTGCTGGCCGCAGTGAGCGAAGAGCATGCACCTGTGGTGGAGGC
GCTGCTGAAGCACGGCGCGGACGCCAATGCAGTCACCTGCAACGGAGCGT
CGGCACTGTGCATGGCAGCTCAAAAGGGCTACCAGGACATTGCCCGGCTG
CTGCTGCAGGGGGGCGCAGACCCCTCATTGCGCGACTTCAGCGGCAAGAC
GCCGTTAGAAATGGCGCGCATCTGCAGGCGTGCACCTGTAGCTGCGATGC
TGGAACAGCACGCAGCGGCTGCGACTAAAGGCGTGGGCGCGCTGCCAGGG
ACCGATCCAGAAACTGTTCCTGAGAAGAACGGTTCTGAAATGCAGCTCGA
CCAACCCCTATGA