mRNA_16950 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|178236 vs. uniprot
Match: A0A835Z8Y7_9STRA (Tic22-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Y7_9STRA) HSP 1 Score: 575 bits (1482), Expect = 3.240e-207 Identity = 292/292 (100.00%), Postives = 292/292 (100.00%), Query Frame = 1 Query: 1 MAAPDQQPQHTPQRRLRLKKRLAQVAAGFAVATAGAPALSQGIRSGHSTSGQVLSEVLMPSAEASVFKKFNQRTLKEKLANVPAFAIVNRGGNFYLNIKETGGQQGMFFTSFEDANDMLFEMLQSPGLNGDARILIIPLDKAFDMIKHPRATGMVNDMGQPETIEFRFHEAVHPREKMELYRVQDKQGAAVPVFYAGGLTIVKEGVKVKPVFFDVKELLDAWFKAAKTDPNMPRVPDIQVYNLPELLLLMESDPTKHTDFGFVPAGSSVEAIKEVRGQHGTRARPMYRLFSY 876 MAAPDQQPQHTPQRRLRLKKRLAQVAAGFAVATAGAPALSQGIRSGHSTSGQVLSEVLMPSAEASVFKKFNQRTLKEKLANVPAFAIVNRGGNFYLNIKETGGQQGMFFTSFEDANDMLFEMLQSPGLNGDARILIIPLDKAFDMIKHPRATGMVNDMGQPETIEFRFHEAVHPREKMELYRVQDKQGAAVPVFYAGGLTIVKEGVKVKPVFFDVKELLDAWFKAAKTDPNMPRVPDIQVYNLPELLLLMESDPTKHTDFGFVPAGSSVEAIKEVRGQHGTRARPMYRLFSY Sbjct: 1 MAAPDQQPQHTPQRRLRLKKRLAQVAAGFAVATAGAPALSQGIRSGHSTSGQVLSEVLMPSAEASVFKKFNQRTLKEKLANVPAFAIVNRGGNFYLNIKETGGQQGMFFTSFEDANDMLFEMLQSPGLNGDARILIIPLDKAFDMIKHPRATGMVNDMGQPETIEFRFHEAVHPREKMELYRVQDKQGAAVPVFYAGGLTIVKEGVKVKPVFFDVKELLDAWFKAAKTDPNMPRVPDIQVYNLPELLLLMESDPTKHTDFGFVPAGSSVEAIKEVRGQHGTRARPMYRLFSY 292
BLAST of jgi.p|Trimin1|178236 vs. uniprot
Match: D7FZH1_ECTSI (Tic22-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZH1_ECTSI) HSP 1 Score: 171 bits (432), Expect = 6.910e-47 Identity = 103/270 (38.15%), Postives = 157/270 (58.15%), Query Frame = 1 Query: 55 KKRLAQVAAGFAVATAGAPALS-------QGIRSGHSTSGQVLSEVLMPSAEASVFKKFNQRTLKEKLANVPAFAIVNRGGNFYLNIKETGG-QQGMFFTSFEDANDMLFEMLQSPGLNGDARILIIPLDKAFDMIKH-PRATGMVNDMGQPETIEFRFHEAVHPREKMELYRVQDKQGAA---VPVFYAGGLTIVKEGVKVKPVFFDVKELLDAWFKAAKTDPNMPRVPDIQVYNLPELLLLMESDPTKHTDFGFVPAGSSVEAIKEVR 828 ++ LA+ AA A T GA ALS + S + V M SAEASV + F +RT++EKLAN+PAF + N+ G+ YL+ E G Q +FFT+ +DA +ML EM+Q +ARIL++ ++KA+ M+K P+ TG ND G E ++F+ +H +K + AA VPVFY GL + ++G VKP+F D +L++AW KAA ++P+MP P ++V+N+P++++ ME + FGF + E IK+ R Sbjct: 104 RRSLARGAASLATFTVGATALSGMSADVQHRLNSRDGAAVVVSIPAAMESAEASVLRPFEKRTVEEKLANLPAFMVTNKKGSPYLSPTEPGEPQMAVFFTNVDDAKEMLMEMVQESTYQNEARILVVSMEKAYGMVKAGPKLTGYQNDEGVDERMDFKLEPDMHSFQKARRLGLDVSPAAANIDVPVFYVEGLEVKRDGGLVKPLFMDPADLVEAWKKAAASNPDMPAEPTVKVFNMPDVIVAMELTD-EFNQFGFFASTEGAEFIKQAR 372
BLAST of jgi.p|Trimin1|178236 vs. uniprot
Match: R7QF31_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QF31_CHOCR) HSP 1 Score: 115 bits (289), Expect = 2.930e-27 Identity = 80/227 (35.24%), Postives = 125/227 (55.07%), Query Frame = 1 Query: 181 SAEASVFKKFNQRTLKEKLANVPAFAIVNRGGNFYL-NIKETGGQQGMFFTSFEDANDMLFEMLQSPGLNGDARILIIPLDKAFDMIK-HPRATGMVNDMGQPETIEFRFH---EAVHPREKMELYRVQDKQGAAVPVFYAGGLTIVKEGVKVKPVFFDVKELLDAWFKAAKTDPNMPRVPDIQVYNLPELLLLMESDPTKHT-DFGFVPAGSSVEAI-KEVRGQHG 840 +A A KF+++T+ EKL+ VP FA+ N G YL N+ +G Q G+ F S DA +ML +M ++PG + DAR+ I+ LDKA++M+K P+ +G+ G+ T+ FRF + V E ++ + + +PVF A GLT+ K V P+F ++L AW K ++ ++P + V NL ++ MESD + GF +SVE + KE G G Sbjct: 13 AAPAFAAAKFSKKTVSEKLSQVPVFAVTNASGQPYLANMDGSGSQIGLIFFSHHDALNMLKDMKKNPGAS-DARVYIMGLDKAYEMVKAKPQPSGIRGAAGEELTMVFRFFPDSKQVKAAEGLQRKLRRRRGVEGIPVFVAKGLTLRKGSENVVPLFLTKEDLDSAWSKLRDSNKDLPNNASVVVGNLLYIIQQMESDGEPELRNLGFFAPKASVEYVTKEQAGPTG 238
BLAST of jgi.p|Trimin1|178236 vs. uniprot
Match: A0A7J7IP27_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IP27_9RHOD) HSP 1 Score: 112 bits (280), Expect = 5.440e-25 Identity = 79/237 (33.33%), Postives = 122/237 (51.48%), Query Frame = 1 Query: 205 KFNQRTLKEKLANVPAFAIVNRGGNFYLNIKETGGQQGMFFTSFEDANDMLFEMLQSPGLNG-DARILIIPLDKAFDMIKH-PRATGMVNDMGQPETIEFRFHEAVHPREKMELYRVQDKQGAA--VPVFYAGGLTIVKEGVKVKPVFFDVKELLDAWFKAAKTDPNMPRVPDIQVYNLPELLLLMES--------DPTKHTDF---GFVPAGSSVE-----AIKEVRGQHGTRARP 855 +++++TL EKLA VP FA+ N G +L E G Q G+ F DA ML ++ +S G DARI ++ LD+AF+M+K P+ +G+ G + FRF+ E + KQ VP F A GLT+ K V PVF D ++L DAW + + ++P+ P+++V +L E++L +E D + D F P+ SVE ++K+ +G ARP Sbjct: 134 RYSRKTLDEKLAQVPVFAVTNESGQPFLAAMERGTQVGLIFFDPSDAMKMLEDLKRSSGKEAEDARIFVMGLDRAFEMVKSKPQPSGLRGPRGDELKMVFRFYPNQQQVEHARSLARKTKQPLVRGVPCFVAKGLTLRKGKEFVIPVFLDKRDLEDAWSRLRQDMSDLPKHPEVEVGDLIEVILRLEEAAKNPKSLDEKELQDIRRVAFFPSSKSVEFMKQESMKQFKGTARMHARP 370
BLAST of jgi.p|Trimin1|178236 vs. uniprot
Match: M1URJ3_CYAM1 (Similar to chloroplast inner membrane protein Tic22 n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1URJ3_CYAM1) HSP 1 Score: 111 bits (278), Expect = 9.280e-25 Identity = 83/254 (32.68%), Postives = 128/254 (50.39%), Query Frame = 1 Query: 154 QVLSEVLMPSAEASVFKKFNQRTLKEKLANVPAFAIVNRGGNFYLNIKETGGQQGMFFTSFEDANDMLFEMLQSPGLNG-DARILIIPLDKAFDMIKH-PRATGMVNDMGQPETIEFRFHEAVHPREKMELYRVQDKQGAA--VPVFYAGGLTIVKEGVKVKPVFFDVKELLDAWFKAAKTDPNMPRVPDIQVYNLPELLLLMES--------DPTKHTDF---GFVPAGSSVE-----AIKEVRGQHGTRARP 855 QVL SA + +++++TL EKLA VP FA+ N G +L E G Q G+ F +DA ML ++ +S G DARI I+ LD+AF+M+K P+ +G+ G + FRF+ E + KQ VP F A GLT+ K V P+F D ++L +AW + + +P+ P+I+V +L E++L +E + T+ D F P+ SVE + K+ +G +RP Sbjct: 109 QVLLGAPAVSAAKTPHARYSRKTLSEKLAQVPVFAVTNESGQPFLAAMERGLQVGLIFFDPDDAIKMLEDLKRSSGKEAEDARIFIMGLDRAFEMVKSKPQPSGLRGPRGDELKMVFRFYPNQQQLEYARTVAKKTKQPTVRGVPCFVAKGLTLRKGKEFVIPIFLDKRDLDEAWNRLRQELAELPKQPEIEVGDLIEVILRLEEAAKNPKSLNETELQDLRRVAFFPSSKSVEFMKRESAKQFKGTARMHSRP 362
BLAST of jgi.p|Trimin1|178236 vs. uniprot
Match: A0A6H5L2Q1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2Q1_9PHAE) HSP 1 Score: 93.2 bits (230), Expect = 8.750e-19 Identity = 59/146 (40.41%), Postives = 87/146 (59.59%), Query Frame = 1 Query: 49 RLKKRLAQVAAGFAVATAGAPALS-------QGIRSGHSTSGQVLSEVLMPSAEASVFKKFNQRTLKEKLANVPAFAIVNRGGNFYLNIKETGG-QQGMFFTSFEDANDMLFEMLQSPGLNGDARILIIPLDKAFDMIKH-PRATG 459 R ++ LA+ AA A T GA ALS + S + V M SAEASV + F +RT++EKLAN+PAF + N+ G+ YL+ + G Q +FFT+ +DA +ML EM+Q +ARIL++ ++KA+ M+K P+ TG Sbjct: 102 RARRSLARGAASLATFTVGATALSGMSADVQHRLNSRDGAAVVVSIPAAMESAEASVLRPFEKRTVEEKLANLPAFMVTNKKGSPYLSPTKPGEPQMAVFFTNVDDAKEMLMEMVQESTYQNEARILVVSMEKAYGMVKAGPKLTG 247
BLAST of jgi.p|Trimin1|178236 vs. uniprot
Match: A0A2V3IZ91_9FLOR (Protein TIC 22, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZ91_9FLOR) HSP 1 Score: 86.3 bits (212), Expect = 1.320e-16 Identity = 62/186 (33.33%), Postives = 99/186 (53.23%), Query Frame = 1 Query: 301 TGGQQGMFFTSFEDANDMLFEMLQSPGLNGDARILIIPLDKAFDMIK-HPRATGMVNDMGQPETIEFRFH---EAVHPREKMELYRVQDKQGAAVPVFYAGGLTIVKEGVKVKPVFFDVKELLDAWFKAAKTDPNMPRVPDIQVYNLPELLLLMESDPTKHT-DFGFVPAGSSVEAI-KEVRGQHG 840 +G Q G+ F S DA +ML +M ++PG + DAR+ I+ LDKA++M+K P +G+ G+ T+ FRF+ + V E ++ VPVF A GLT+ K + P+F ++L +W K +++ ++P + V NL ++ MESD + GF +SVE + KE G G Sbjct: 4 SGSQIGLIFFSHLDALNMLKDMQKNPGAS-DARVYIMGLDKAYEMVKAKPTPSGIRGSGGEEMTMVFRFYPDSKQVKAAEGLQRKMRLSSSVQGVPVFVAKGLTLRKGNENIVPLFLTKEDLDASWAKLRESNKHLPNSAPVAVGNLLYIIQQMESDEQPQLRNLGFFAPRASVEYVSKEQAGPTG 188
BLAST of jgi.p|Trimin1|178236 vs. uniprot
Match: A0A6H5L2U4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2U4_9PHAE) HSP 1 Score: 82.4 bits (202), Expect = 1.410e-15 Identity = 43/124 (34.68%), Postives = 71/124 (57.26%), Query Frame = 1 Query: 466 NDMGQPETIEFRFHEAVHPREKMELYRVQDKQGAA---VPVFYAGGLTIVKEGVKVKPVFFDVKELLDAWFKAAKTDPNMPRVPDIQVYNLPELLLLMESDPTKHTDFGFVPAGSSVEAIKEVR 828 ND G E ++F+ +H +K + AA +PVFYA GL + ++G VKP+F D +L++AW KA ++P+MP P ++V+N+P++++ ME + FGF + E IK+ R Sbjct: 23 NDDGVDEMMDFKLEPDMHSFQKARRLGLDVSPAAANTDIPVFYAEGLEVKRDGGLVKPLFMDPADLVEAWKKATASNPDMPAEPTVKVFNMPDVIVAMELTD-EFNQFGFFASTEGAEFIKQAR 145
BLAST of jgi.p|Trimin1|178236 vs. uniprot
Match: A0A1X6NSW5_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NSW5_PORUM) HSP 1 Score: 80.1 bits (196), Expect = 1.270e-13 Identity = 57/148 (38.51%), Postives = 78/148 (52.70%), Query Frame = 1 Query: 232 KLANVPAFAIVNRGGNFYL-NIKETGGQQGMFFTSFEDANDMLFEMLQSPGLNGDARILIIPLDKAFDMIK-HPRATGMVNDMGQPETIEFRFH-EAVHPREKMELYRVQDKQG----AAVPVFYAGGLTIVKEGVKVKPVFFDVKEL 654 KLA VP FA+ N GG YL N+ G Q G+ F S E+A M +M +SP DAR+ I+ LDKA++M+K P +G+ G+ + FRF + L R G A VPVF A GLT+ K G V P+F +++ Sbjct: 123 KLAQVPVFAVTNAGGQPYLANVDGAGTQVGLIFFSHEEALSMQADMQKSP-TTADARVYIMGLDKAYEMVKAKPTPSGIRGPAGEELRMVFRFSPDRKQVGHAARLLRAVPIGGGGETAGVPVFAAPGLTLRKAGEPVVPLFLAKEDM 269 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|178236 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_16950 ID=mRNA_16950|Name=jgi.p|Trimin1|178236|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=879bp|location=Sequence derived from alignment at Contig_167:175446..177813+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGCTGCGCCAGACCAACAACCACAACATACACCACAGAGGCGATTGCGback to top protein sequence of jgi.p|Trimin1|178236 >Trimin1|178236|e_gw1.167.79.1 ID=Trimin1|178236|e_gw1.167.79.1|Name=jgi.p|Trimin1|178236|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=293bp MAAPDQQPQHTPQRRLRLKKRLAQVAAGFAVATAGAPALSQGIRSGHSTSback to top mRNA from alignment at Contig_167:175446..177813+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_16950 ID=mRNA_16950|Name=jgi.p|Trimin1|178236|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2368bp|location=Sequence derived from alignment at Contig_167:175446..177813+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_167:175446..177813+ >mRNA_16950 ID=mRNA_16950|Name=jgi.p|Trimin1|178236|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=879bp|location=Sequence derived from alignment at Contig_167:175446..177813+ (Tribonema minus UTEX_B_3156 )back to top |