mRNA_16870 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|138786
Unique NamemRNA_16870
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|138786 vs. uniprot
Match: A0A836CIQ3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIQ3_9STRA)

HSP 1 Score: 352 bits (903), Expect = 8.500e-123
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 1
Query:    1 MRVLQGELLRPLCGSPLNELDFLHLDRYQVERLHGRGLAECKRLRHLRLARNALVGIPKGALGTSNELWLLDFSRNCISQIEDLSKFAALGSVDLSHNDLSWVALRALARTHVLQLNVAGNPKLQPPANAGAGGHGSDTSTETKRATRSAVLATLPLVWVLNGEFVTAAERKAACQE 531
            MRVLQGELLRPLCGSPLNELDFLHLDRYQVERLHGRGLAECKRLRHLRLARNALVGIPKGALGTSNELWLLDFSRNCISQIEDLSKFAALGSVDLSHNDLSWVALRALARTHVLQLNVAGNPKLQPPANAGAGGHGSDTSTETKRATRSAVLATLPLVWVLNGEFVTAAERKAACQE
Sbjct:    1 MRVLQGELLRPLCGSPLNELDFLHLDRYQVERLHGRGLAECKRLRHLRLARNALVGIPKGALGTSNELWLLDFSRNCISQIEDLSKFAALGSVDLSHNDLSWVALRALARTHVLQLNVAGNPKLQPPANAGAGGHGSDTSTETKRATRSAVLATLPLVWVLNGEFVTAAERKAACQE 177          
BLAST of jgi.p|Trimin1|138786 vs. uniprot
Match: UPI0018D80A08 (uncharacterized protein LOC119723086 isoform X1 n=3 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D80A08)

HSP 1 Score: 82.0 bits (201), Expect = 6.210e-15
Identity = 58/168 (34.52%), Postives = 86/168 (51.19%), Query Frame = 1
Query:   10 LQGELLRPLCGSPLNELDFLHLDRYQVERLHGRGLAECKRLRHLRLARNALVGIPKGALGTSNELWLLDFSRNCISQIEDLSKFAALGSVDLSHNDLSWVALRALARTHVLQLNVAGNPKLQPPANAGAGGHGSDTSTETKRATRSAVLATLPLVWVLNGEFVTAAER 513
            L  +L+R     PL  +++L L    +  + G  L EC RL+ L L  N  +GI +  + +   LW LD S   IS ++ LSKF ALG ++L++NDL+W  L  +   HVL +++ GN  L                 E  +  R  V+ +LP VW L+G  VT+AER
Sbjct:    3 LTSKLVRSRSRGPLYSVEYLDLSCLGIVTIDG--LKECSRLQVLLLQGNN-IGIVQN-IESCYSLWRLDLSNCKISNLDGLSKFIALGCLNLANNDLAWSELMKIRHMHVLDMSLHGNETL-----------------ERDKYYRIHVIDSLPNVWTLDGRIVTSAER 149          
BLAST of jgi.p|Trimin1|138786 vs. uniprot
Match: UPI001BB0EEF8 (uncharacterized protein LOC121424499 isoform X1 n=6 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB0EEF8)

HSP 1 Score: 80.1 bits (196), Expect = 2.930e-14
Identity = 54/166 (32.53%), Postives = 83/166 (50.00%), Query Frame = 1
Query:   16 GELLRPLCGSPLNELDFLHLDRYQVERLHGRGLAECKRLRHLRLARNALVGIPKGALGTSNELWLLDFSRNCISQIEDLSKFAALGSVDLSHNDLSWVALRALARTHVLQLNVAGNPKLQPPANAGAGGHGSDTSTETKRATRSAVLATLPLVWVLNGEFVTAAER 513
            G LLR  C  PLNE+ ++ L    + R+    L    +L  L L  N +  +    L   + LW L    N ++ ++ LSKF ALG+++LS N+L W  LR +   ++L+L++ GNPKL                 +     R  V+  LP VW+L+G  +T+AER
Sbjct:   20 GRLLRRRCRGPLNEVKYVDLSNRGLARIEN--LNVLPKLETLILKGNDITLVQN--LMVCHHLWHLHLGNNQVTNLDGLSKFVALGTLNLSLNNLVWSDLRHIRHMYILELSLHGNPKL-----------------DKDPYYRIHVIDCLPNVWMLDGRLITSAER 164          
BLAST of jgi.p|Trimin1|138786 vs. uniprot
Match: A0A7M7GHF2_STRPU (Uncharacterized protein n=3 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7GHF2_STRPU)

HSP 1 Score: 77.0 bits (188), Expect = 3.410e-13
Identity = 53/164 (32.32%), Postives = 83/164 (50.61%), Query Frame = 1
Query:   22 LLRPLCGSPLNELDFLHLDRYQVERLHGRGLAECKRLRHLRLARNALVGIPKGALGTSNELWLLDFSRNCISQIEDLSKFAALGSVDLSHNDLSWVALRALARTHVLQLNVAGNPKLQPPANAGAGGHGSDTSTETKRATRSAVLATLPLVWVLNGEFVTAAER 513
            LLR  C  PLNE+ ++ L    + ++    L    +L  L L  N +  +    L   + LW L    N ++ ++ LSKF ALG+++LS N+LSW  LR +   ++L+L++ GNPKL                 +     R  V+  LP VW+L+G  +T+AER
Sbjct:    7 LLRRRCRGPLNEVKYVDLANRGLAKIEN--LNVLPKLETLILKGNDISLVQN--LMVCHHLWHLHLGNNQVTNLDGLSKFVALGTLNLSLNNLSWSDLRHIRHMYILELSLHGNPKL-----------------DRDPYYRLHVIDCLPNVWMLDGRLITSAER 149          
BLAST of jgi.p|Trimin1|138786 vs. uniprot
Match: G4YQH8_PHYSP (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YQH8_PHYSP)

HSP 1 Score: 73.6 bits (179), Expect = 4.490e-12
Identity = 54/177 (30.51%), Postives = 81/177 (45.76%), Query Frame = 1
Query:    1 MRVLQGELLRPLCGSPLNELDFLHLDRYQVERLHGRGLAECKRLRHLRLARNALVGIPKGALGTSNELWLLDFSRNCISQIEDLSKFAALGSVDLSHNDLSWVALRALARTHVLQLNVAGNPKLQPPANAGAGGHGSDTSTETKRATRSAVLATLPLVWVLNGEFVTAAERKAACQE 531
            MR      +R    +PL +L  LHL    +E +  + L  CK LR L    N +  I    +    +LW +DF+ N +  +  L+ F ALG V L  N +S+  L  +   H+L++ + GN  L                  T    R  V+A LP  WVL+G F++ AER+ A +E
Sbjct:    1 MRSPDAAFIRARAKAPLPDLLALHLSDSDIECI--KHLELCKSLRSLYSDSNQIKDIE--GIIELRKLWRIDFNGNLLKNLHPLASFRALGFVHLERNRISFEDLVCIRDVHLLEVRLVGNAAL--------------FKDNTVDEYRKKVVALLPNAWVLDGHFISTAERRQAVEE 159          
BLAST of jgi.p|Trimin1|138786 vs. uniprot
Match: A0A6A3RK76_9STRA (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3RK76_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 4.520e-11
Identity = 52/177 (29.38%), Postives = 81/177 (45.76%), Query Frame = 1
Query:    1 MRVLQGELLRPLCGSPLNELDFLHLDRYQVERLHGRGLAECKRLRHLRLARNALVGIPKGALGTSNELWLLDFSRNCISQIEDLSKFAALGSVDLSHNDLSWVALRALARTHVLQLNVAGNPKLQPPANAGAGGHGSDTSTETKRATRSAVLATLPLVWVLNGEFVTAAERKAACQE 531
            MR  +   +R    +PL  L  LHL    +E +   GL  CK L+ L +  N +  I    +    +LW +D S N +  +  L+ F ALG + L  N + +  L  +   H+L++ + GN  L                  T    R  V+A LP +W+L+G FV+ AER+ A +E
Sbjct:    1 MRSPEAAFIRARAKAPLPGLLVLHLSDSDIECIKHLGL--CKNLQSLYVGSNQIKDIE--GIIELRKLWRIDLSGNLLKNLHALASFRALGFLHLERNRICFEDLVCIRDVHLLEVRLLGNATL--------------FKGNTVDDYRKKVVALLPNMWILDGHFVSTAERRQAVEE 159          
BLAST of jgi.p|Trimin1|138786 vs. uniprot
Match: A0A6S7FMP3_PARCT (Uncharacterized protein LOC110062170 n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7FMP3_PARCT)

HSP 1 Score: 65.9 bits (159), Expect = 2.200e-9
Identity = 49/169 (28.99%), Postives = 75/169 (44.38%), Query Frame = 1
Query:   10 LQGELLRPLCGSPLNELDFLHLDRYQVERLHGRGLAECKRLRHLRLARNALVGIPKGALGTSNELWLLDFSRNCISQIEDLSKFAALGSVDLSHNDLSWVALRALARTHVLQLNVAGNPKLQPPANAGAGGHGSDTSTETKRATRSAVLATLPLVWVLNGEFVTAAERK 516
            + G+LLR     PLN++ +L L    +  L+   L  C +L  L    N L  +P                         L +F+ LG + LS+N L W  L  L +TH+L+L++ GNP+L                 E     R  ++  LPLVW+L+G  +T+AER+
Sbjct:    3 ITGQLLRSRSKRPLNQVRYLDLSSTNIVTLNQ--LELCPKLTTLIANHNHLESVPNXXXXXXXXXXXXXXXXXXXXN--GLCRFSVLGCLVLSNNCLDWSDLEGLHQTHILELSLHGNPRL-----------------EKDPYYRMHIIDCLPLVWMLDGRLITSAERQ 150          
BLAST of jgi.p|Trimin1|138786 vs. uniprot
Match: A0A7J7IVQ4_BUGNE (Uncharacterized protein n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7IVQ4_BUGNE)

HSP 1 Score: 58.5 bits (140), Expect = 3.730e-7
Identity = 43/157 (27.39%), Postives = 68/157 (43.31%), Query Frame = 1
Query:   43 SPLNELDFLHLDRYQVERLHGRGLAECKRLRHLRLARNALVGIPKGALGTSNELWLLDFSRNCISQIEDLSKFAALGSVDLSHNDLSWVALRALARTHVLQLNVAGNPKLQPPANAGAGGHGSDTSTETKRATRSAVLATLPLVWVLNGEFVTAAER 513
            S L  + +L+L   ++  L    L  C +L+ L ++ N +  IP   +                  ++   +F A+G++DLS+N LSW  L  L   H+L L + GN +L                 E     R  V+  LP VW+++G  VT AER
Sbjct:   15 SSLQSIKYLNLSNLEICILEK--LGSCCKLQSLNVSHNLIESIPT-TIEQXXXXXXXXXXXXXXXSLDGFGRFVAIGTLDLSNNQLSWFELSKLQHLHILDLRLHGNSQL-----------------EKDPYYRIHVIDCLPNVWMVDGRLVTTAER 151          
BLAST of jgi.p|Trimin1|138786 vs. uniprot
Match: A0A6S7HTS0_PARCT (Uncharacterized protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HTS0_PARCT)

HSP 1 Score: 58.5 bits (140), Expect = 8.010e-7
Identity = 33/95 (34.74%), Postives = 51/95 (53.68%), Query Frame = 1
Query:  232 ISQIEDLSKFAALGSVDLSHNDLSWVALRALARTHVLQLNVAGNPKLQPPANAGAGGHGSDTSTETKRATRSAVLATLPLVWVLNGEFVTAAERK 516
            +  I  L +F+ LG + LS+N L W  L  L +TH+L+L++ GNP+L                 E     R  ++  LPLVW+L+G  +T+AER+
Sbjct:  109 LQDINGLCRFSVLGCLVLSNNCLDWSDLEGLHQTHILELSLHGNPRL-----------------EKDPYYRMHIIDCLPLVWMLDGRLITSAERQ 186          
BLAST of jgi.p|Trimin1|138786 vs. uniprot
Match: UPI00096B4607 (uncharacterized protein LOC109585327 n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=UPI00096B4607)

HSP 1 Score: 55.1 bits (131), Expect = 1.200e-5
Identity = 31/91 (34.07%), Postives = 51/91 (56.04%), Query Frame = 1
Query:  244 EDLSKFAALGSVDLSHNDLSWVALRALARTHVLQLNVAGNPKLQPPANAGAGGHGSDTSTETKRATRSAVLATLPLVWVLNGEFVTAAERK 516
            + LS+F A+GS+ L++N++ W  L+ L+  ++L L++ GN KL    N                  RS V+  +P +W+L+G+ VTA ERK
Sbjct:  116 QGLSRFPAIGSLVLNNNNIDWNELKRLSHMYILSLSLTGNNKLTNDNNY-----------------RSHVIDIIPHLWMLDGQLVTAGERK 189          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|138786 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A836CIQ3_9STRA8.500e-123100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
UPI0018D80A086.210e-1534.52uncharacterized protein LOC119723086 isoform X1 n=... [more]
UPI001BB0EEF82.930e-1432.53uncharacterized protein LOC121424499 isoform X1 n=... [more]
A0A7M7GHF2_STRPU3.410e-1332.32Uncharacterized protein n=3 Tax=Strongylocentrotus... [more]
G4YQH8_PHYSP4.490e-1230.51Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A6A3RK76_9STRA4.520e-1129.38Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
A0A6S7FMP3_PARCT2.200e-928.99Uncharacterized protein LOC110062170 n=3 Tax=Param... [more]
A0A7J7IVQ4_BUGNE3.730e-727.39Uncharacterized protein n=1 Tax=Bugula neritina Ta... [more]
A0A6S7HTS0_PARCT8.010e-734.74Uncharacterized protein (Fragment) n=2 Tax=Paramur... [more]
UPI00096B46071.200e-534.07uncharacterized protein LOC109585327 n=1 Tax=Amphi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_193contigContig_193:244880..245410 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|138786|gw1.193.49.1
Descriptionfunction. Source PGD
COG categoryS
Max annot lvl121069|Pythiales
EggNOG OGs2BKUT@1|root,2S1JB@2759|Eukaryota,1MEQE@121069|Pythiales
Evalue3.21e-15
Seed ortholog42099.EPrPV00000017020
Hectar predicted targeting categoryother localisation
TranscriptId139108
TrackFilteredModels1
ProteinId138786
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|138786gene_16870Tribonema minus UTEX_B_3156 geneContig_193 244880..245410 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16870_1exon_16870_1Tribonema minus UTEX_B_3156 exonContig_193 244880..245410 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16870CDS_16870Tribonema minus UTEX_B_3156 CDSContig_193 244880..245410 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|138786Trimin1|138786|gw1.193.49.1Tribonema minus UTEX_B_3156 polypeptideContig_193 244880..245410 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16870 ID=mRNA_16870|Name=jgi.p|Trimin1|138786|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=531bp|location=Sequence derived from alignment at Contig_193:244880..245410+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGGTGCTGCAAGGCGAATTGCTTCGACCTCTTTGCGGCAGCCCTCT
CAATGAGCTCGACTTTCTGCATCTCGACCGGTACCAGGTCGAGCGCTTGC
ATGGCCGAGGTCTAGCGGAGTGCAAGCGGCTCAGGCACTTGAGGCTAGCT
CGCAATGCACTGGTAGGCATTCCTAAAGGCGCCCTCGGCACTAGCAACGA
GTTGTGGCTTCTCGACTTCAGCCGAAACTGCATCAGCCAGATCGAGGATC
TCAGCAAATTCGCAGCTCTAGGCAGCGTTGACCTGTCGCACAACGACCTA
TCGTGGGTGGCTCTGAGAGCACTAGCACGGACACATGTGCTGCAGCTCAA
TGTGGCGGGCAACCCCAAGCTTCAACCTCCTGCAAATGCTGGTGCAGGTG
GACACGGCTCCGACACAAGCACCGAGACAAAACGTGCCACACGGAGTGCG
GTGCTGGCGACGCTGCCTTTGGTCTGGGTGTTAAATGGCGAATTCGTTAC
TGCCGCAGAGCGCAAGGCTGCTTGCCAGGAG
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protein sequence of jgi.p|Trimin1|138786

>Trimin1|138786|gw1.193.49.1 ID=Trimin1|138786|gw1.193.49.1|Name=jgi.p|Trimin1|138786|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=177bp
MRVLQGELLRPLCGSPLNELDFLHLDRYQVERLHGRGLAECKRLRHLRLA
RNALVGIPKGALGTSNELWLLDFSRNCISQIEDLSKFAALGSVDLSHNDL
SWVALRALARTHVLQLNVAGNPKLQPPANAGAGGHGSDTSTETKRATRSA
VLATLPLVWVLNGEFVTAAERKAACQE
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mRNA from alignment at Contig_193:244880..245410+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16870 ID=mRNA_16870|Name=jgi.p|Trimin1|138786|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=531bp|location=Sequence derived from alignment at Contig_193:244880..245410+ (Tribonema minus UTEX_B_3156 )
ATGCGGGTGCTGCAAGGCGAATTGCTTCGACCTCTTTGCGGCAGCCCTCT CAATGAGCTCGACTTTCTGCATCTCGACCGGTACCAGGTCGAGCGCTTGC ATGGCCGAGGTCTAGCGGAGTGCAAGCGGCTCAGGCACTTGAGGCTAGCT CGCAATGCACTGGTAGGCATTCCTAAAGGCGCCCTCGGCACTAGCAACGA GTTGTGGCTTCTCGACTTCAGCCGAAACTGCATCAGCCAGATCGAGGATC TCAGCAAATTCGCAGCTCTAGGCAGCGTTGACCTGTCGCACAACGACCTA TCGTGGGTGGCTCTGAGAGCACTAGCACGGACACATGTGCTGCAGCTCAA TGTGGCGGGCAACCCCAAGCTTCAACCTCCTGCAAATGCTGGTGCAGGTG GACACGGCTCCGACACAAGCACCGAGACAAAACGTGCCACACGGAGTGCG GTGCTGGCGACGCTGCCTTTGGTCTGGGTGTTAAATGGCGAATTCGTTAC TGCCGCAGAGCGCAAGGCTGCTTGCCAGGAG
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Coding sequence (CDS) from alignment at Contig_193:244880..245410+

>mRNA_16870 ID=mRNA_16870|Name=jgi.p|Trimin1|138786|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=531bp|location=Sequence derived from alignment at Contig_193:244880..245410+ (Tribonema minus UTEX_B_3156 )
ATGCGGGTGCTGCAAGGCGAATTGCTTCGACCTCTTTGCGGCAGCCCTCT
CAATGAGCTCGACTTTCTGCATCTCGACCGGTACCAGGTCGAGCGCTTGC
ATGGCCGAGGTCTAGCGGAGTGCAAGCGGCTCAGGCACTTGAGGCTAGCT
CGCAATGCACTGGTAGGCATTCCTAAAGGCGCCCTCGGCACTAGCAACGA
GTTGTGGCTTCTCGACTTCAGCCGAAACTGCATCAGCCAGATCGAGGATC
TCAGCAAATTCGCAGCTCTAGGCAGCGTTGACCTGTCGCACAACGACCTA
TCGTGGGTGGCTCTGAGAGCACTAGCACGGACACATGTGCTGCAGCTCAA
TGTGGCGGGCAACCCCAAGCTTCAACCTCCTGCAAATGCTGGTGCAGGTG
GACACGGCTCCGACACAAGCACCGAGACAAAACGTGCCACACGGAGTGCG
GTGCTGGCGACGCTGCCTTTGGTCTGGGTGTTAAATGGCGAATTCGTTAC
TGCCGCAGAGCGCAAGGCTGCTTGCCAGGAG
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