mRNA_16870 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|138786 vs. uniprot
Match: A0A836CIQ3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIQ3_9STRA) HSP 1 Score: 352 bits (903), Expect = 8.500e-123 Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 1 Query: 1 MRVLQGELLRPLCGSPLNELDFLHLDRYQVERLHGRGLAECKRLRHLRLARNALVGIPKGALGTSNELWLLDFSRNCISQIEDLSKFAALGSVDLSHNDLSWVALRALARTHVLQLNVAGNPKLQPPANAGAGGHGSDTSTETKRATRSAVLATLPLVWVLNGEFVTAAERKAACQE 531 MRVLQGELLRPLCGSPLNELDFLHLDRYQVERLHGRGLAECKRLRHLRLARNALVGIPKGALGTSNELWLLDFSRNCISQIEDLSKFAALGSVDLSHNDLSWVALRALARTHVLQLNVAGNPKLQPPANAGAGGHGSDTSTETKRATRSAVLATLPLVWVLNGEFVTAAERKAACQE Sbjct: 1 MRVLQGELLRPLCGSPLNELDFLHLDRYQVERLHGRGLAECKRLRHLRLARNALVGIPKGALGTSNELWLLDFSRNCISQIEDLSKFAALGSVDLSHNDLSWVALRALARTHVLQLNVAGNPKLQPPANAGAGGHGSDTSTETKRATRSAVLATLPLVWVLNGEFVTAAERKAACQE 177
BLAST of jgi.p|Trimin1|138786 vs. uniprot
Match: UPI0018D80A08 (uncharacterized protein LOC119723086 isoform X1 n=3 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D80A08) HSP 1 Score: 82.0 bits (201), Expect = 6.210e-15 Identity = 58/168 (34.52%), Postives = 86/168 (51.19%), Query Frame = 1 Query: 10 LQGELLRPLCGSPLNELDFLHLDRYQVERLHGRGLAECKRLRHLRLARNALVGIPKGALGTSNELWLLDFSRNCISQIEDLSKFAALGSVDLSHNDLSWVALRALARTHVLQLNVAGNPKLQPPANAGAGGHGSDTSTETKRATRSAVLATLPLVWVLNGEFVTAAER 513 L +L+R PL +++L L + + G L EC RL+ L L N +GI + + + LW LD S IS ++ LSKF ALG ++L++NDL+W L + HVL +++ GN L E + R V+ +LP VW L+G VT+AER Sbjct: 3 LTSKLVRSRSRGPLYSVEYLDLSCLGIVTIDG--LKECSRLQVLLLQGNN-IGIVQN-IESCYSLWRLDLSNCKISNLDGLSKFIALGCLNLANNDLAWSELMKIRHMHVLDMSLHGNETL-----------------ERDKYYRIHVIDSLPNVWTLDGRIVTSAER 149
BLAST of jgi.p|Trimin1|138786 vs. uniprot
Match: UPI001BB0EEF8 (uncharacterized protein LOC121424499 isoform X1 n=6 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB0EEF8) HSP 1 Score: 80.1 bits (196), Expect = 2.930e-14 Identity = 54/166 (32.53%), Postives = 83/166 (50.00%), Query Frame = 1 Query: 16 GELLRPLCGSPLNELDFLHLDRYQVERLHGRGLAECKRLRHLRLARNALVGIPKGALGTSNELWLLDFSRNCISQIEDLSKFAALGSVDLSHNDLSWVALRALARTHVLQLNVAGNPKLQPPANAGAGGHGSDTSTETKRATRSAVLATLPLVWVLNGEFVTAAER 513 G LLR C PLNE+ ++ L + R+ L +L L L N + + L + LW L N ++ ++ LSKF ALG+++LS N+L W LR + ++L+L++ GNPKL + R V+ LP VW+L+G +T+AER Sbjct: 20 GRLLRRRCRGPLNEVKYVDLSNRGLARIEN--LNVLPKLETLILKGNDITLVQN--LMVCHHLWHLHLGNNQVTNLDGLSKFVALGTLNLSLNNLVWSDLRHIRHMYILELSLHGNPKL-----------------DKDPYYRIHVIDCLPNVWMLDGRLITSAER 164
BLAST of jgi.p|Trimin1|138786 vs. uniprot
Match: A0A7M7GHF2_STRPU (Uncharacterized protein n=3 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7GHF2_STRPU) HSP 1 Score: 77.0 bits (188), Expect = 3.410e-13 Identity = 53/164 (32.32%), Postives = 83/164 (50.61%), Query Frame = 1 Query: 22 LLRPLCGSPLNELDFLHLDRYQVERLHGRGLAECKRLRHLRLARNALVGIPKGALGTSNELWLLDFSRNCISQIEDLSKFAALGSVDLSHNDLSWVALRALARTHVLQLNVAGNPKLQPPANAGAGGHGSDTSTETKRATRSAVLATLPLVWVLNGEFVTAAER 513 LLR C PLNE+ ++ L + ++ L +L L L N + + L + LW L N ++ ++ LSKF ALG+++LS N+LSW LR + ++L+L++ GNPKL + R V+ LP VW+L+G +T+AER Sbjct: 7 LLRRRCRGPLNEVKYVDLANRGLAKIEN--LNVLPKLETLILKGNDISLVQN--LMVCHHLWHLHLGNNQVTNLDGLSKFVALGTLNLSLNNLSWSDLRHIRHMYILELSLHGNPKL-----------------DRDPYYRLHVIDCLPNVWMLDGRLITSAER 149
BLAST of jgi.p|Trimin1|138786 vs. uniprot
Match: G4YQH8_PHYSP (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YQH8_PHYSP) HSP 1 Score: 73.6 bits (179), Expect = 4.490e-12 Identity = 54/177 (30.51%), Postives = 81/177 (45.76%), Query Frame = 1 Query: 1 MRVLQGELLRPLCGSPLNELDFLHLDRYQVERLHGRGLAECKRLRHLRLARNALVGIPKGALGTSNELWLLDFSRNCISQIEDLSKFAALGSVDLSHNDLSWVALRALARTHVLQLNVAGNPKLQPPANAGAGGHGSDTSTETKRATRSAVLATLPLVWVLNGEFVTAAERKAACQE 531 MR +R +PL +L LHL +E + + L CK LR L N + I + +LW +DF+ N + + L+ F ALG V L N +S+ L + H+L++ + GN L T R V+A LP WVL+G F++ AER+ A +E Sbjct: 1 MRSPDAAFIRARAKAPLPDLLALHLSDSDIECI--KHLELCKSLRSLYSDSNQIKDIE--GIIELRKLWRIDFNGNLLKNLHPLASFRALGFVHLERNRISFEDLVCIRDVHLLEVRLVGNAAL--------------FKDNTVDEYRKKVVALLPNAWVLDGHFISTAERRQAVEE 159
BLAST of jgi.p|Trimin1|138786 vs. uniprot
Match: A0A6A3RK76_9STRA (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3RK76_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 4.520e-11 Identity = 52/177 (29.38%), Postives = 81/177 (45.76%), Query Frame = 1 Query: 1 MRVLQGELLRPLCGSPLNELDFLHLDRYQVERLHGRGLAECKRLRHLRLARNALVGIPKGALGTSNELWLLDFSRNCISQIEDLSKFAALGSVDLSHNDLSWVALRALARTHVLQLNVAGNPKLQPPANAGAGGHGSDTSTETKRATRSAVLATLPLVWVLNGEFVTAAERKAACQE 531 MR + +R +PL L LHL +E + GL CK L+ L + N + I + +LW +D S N + + L+ F ALG + L N + + L + H+L++ + GN L T R V+A LP +W+L+G FV+ AER+ A +E Sbjct: 1 MRSPEAAFIRARAKAPLPGLLVLHLSDSDIECIKHLGL--CKNLQSLYVGSNQIKDIE--GIIELRKLWRIDLSGNLLKNLHALASFRALGFLHLERNRICFEDLVCIRDVHLLEVRLLGNATL--------------FKGNTVDDYRKKVVALLPNMWILDGHFVSTAERRQAVEE 159
BLAST of jgi.p|Trimin1|138786 vs. uniprot
Match: A0A6S7FMP3_PARCT (Uncharacterized protein LOC110062170 n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7FMP3_PARCT) HSP 1 Score: 65.9 bits (159), Expect = 2.200e-9 Identity = 49/169 (28.99%), Postives = 75/169 (44.38%), Query Frame = 1 Query: 10 LQGELLRPLCGSPLNELDFLHLDRYQVERLHGRGLAECKRLRHLRLARNALVGIPKGALGTSNELWLLDFSRNCISQIEDLSKFAALGSVDLSHNDLSWVALRALARTHVLQLNVAGNPKLQPPANAGAGGHGSDTSTETKRATRSAVLATLPLVWVLNGEFVTAAERK 516 + G+LLR PLN++ +L L + L+ L C +L L N L +P L +F+ LG + LS+N L W L L +TH+L+L++ GNP+L E R ++ LPLVW+L+G +T+AER+ Sbjct: 3 ITGQLLRSRSKRPLNQVRYLDLSSTNIVTLNQ--LELCPKLTTLIANHNHLESVPNXXXXXXXXXXXXXXXXXXXXN--GLCRFSVLGCLVLSNNCLDWSDLEGLHQTHILELSLHGNPRL-----------------EKDPYYRMHIIDCLPLVWMLDGRLITSAERQ 150
BLAST of jgi.p|Trimin1|138786 vs. uniprot
Match: A0A7J7IVQ4_BUGNE (Uncharacterized protein n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7IVQ4_BUGNE) HSP 1 Score: 58.5 bits (140), Expect = 3.730e-7 Identity = 43/157 (27.39%), Postives = 68/157 (43.31%), Query Frame = 1 Query: 43 SPLNELDFLHLDRYQVERLHGRGLAECKRLRHLRLARNALVGIPKGALGTSNELWLLDFSRNCISQIEDLSKFAALGSVDLSHNDLSWVALRALARTHVLQLNVAGNPKLQPPANAGAGGHGSDTSTETKRATRSAVLATLPLVWVLNGEFVTAAER 513 S L + +L+L ++ L L C +L+ L ++ N + IP + ++ +F A+G++DLS+N LSW L L H+L L + GN +L E R V+ LP VW+++G VT AER Sbjct: 15 SSLQSIKYLNLSNLEICILEK--LGSCCKLQSLNVSHNLIESIPT-TIEQXXXXXXXXXXXXXXXSLDGFGRFVAIGTLDLSNNQLSWFELSKLQHLHILDLRLHGNSQL-----------------EKDPYYRIHVIDCLPNVWMVDGRLVTTAER 151
BLAST of jgi.p|Trimin1|138786 vs. uniprot
Match: A0A6S7HTS0_PARCT (Uncharacterized protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HTS0_PARCT) HSP 1 Score: 58.5 bits (140), Expect = 8.010e-7 Identity = 33/95 (34.74%), Postives = 51/95 (53.68%), Query Frame = 1 Query: 232 ISQIEDLSKFAALGSVDLSHNDLSWVALRALARTHVLQLNVAGNPKLQPPANAGAGGHGSDTSTETKRATRSAVLATLPLVWVLNGEFVTAAERK 516 + I L +F+ LG + LS+N L W L L +TH+L+L++ GNP+L E R ++ LPLVW+L+G +T+AER+ Sbjct: 109 LQDINGLCRFSVLGCLVLSNNCLDWSDLEGLHQTHILELSLHGNPRL-----------------EKDPYYRMHIIDCLPLVWMLDGRLITSAERQ 186
BLAST of jgi.p|Trimin1|138786 vs. uniprot
Match: UPI00096B4607 (uncharacterized protein LOC109585327 n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=UPI00096B4607) HSP 1 Score: 55.1 bits (131), Expect = 1.200e-5 Identity = 31/91 (34.07%), Postives = 51/91 (56.04%), Query Frame = 1 Query: 244 EDLSKFAALGSVDLSHNDLSWVALRALARTHVLQLNVAGNPKLQPPANAGAGGHGSDTSTETKRATRSAVLATLPLVWVLNGEFVTAAERK 516 + LS+F A+GS+ L++N++ W L+ L+ ++L L++ GN KL N RS V+ +P +W+L+G+ VTA ERK Sbjct: 116 QGLSRFPAIGSLVLNNNNIDWNELKRLSHMYILSLSLTGNNKLTNDNNY-----------------RSHVIDIIPHLWMLDGQLVTAGERK 189 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|138786 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_16870 ID=mRNA_16870|Name=jgi.p|Trimin1|138786|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=531bp|location=Sequence derived from alignment at Contig_193:244880..245410+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCGGGTGCTGCAAGGCGAATTGCTTCGACCTCTTTGCGGCAGCCCTCTback to top protein sequence of jgi.p|Trimin1|138786 >Trimin1|138786|gw1.193.49.1 ID=Trimin1|138786|gw1.193.49.1|Name=jgi.p|Trimin1|138786|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=177bp MRVLQGELLRPLCGSPLNELDFLHLDRYQVERLHGRGLAECKRLRHLRLAback to top mRNA from alignment at Contig_193:244880..245410+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_16870 ID=mRNA_16870|Name=jgi.p|Trimin1|138786|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=531bp|location=Sequence derived from alignment at Contig_193:244880..245410+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_193:244880..245410+ >mRNA_16870 ID=mRNA_16870|Name=jgi.p|Trimin1|138786|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=531bp|location=Sequence derived from alignment at Contig_193:244880..245410+ (Tribonema minus UTEX_B_3156 )back to top |