mRNA_16866 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|36281
Unique Name	mRNA_16866
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

[Close]

BLAST of jgi.p|Trimin1|36281 vs. uniprot
Match: A0A835ZAR3_9STRA (Putative_PNPOx domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAR3_9STRA)

HSP 1 Score: 432 bits (1111), Expect = 1.990e-150
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 1

Query:   67 MGRRDRSLVSTLAIIGALAYVVTGVMRKRRKRAELGYYDGTIEPPLPPEVVALLHKCSLCYLSTFTDDHPHLSLMNFTYYQPDEVIIMSTRRDTKKYNLLQSSNNVAVLVHDFPGQRSRDGSSSSPPLHLSSDETGKMETFSITMNGRARIEAGEVAETYREEHRKNNPGSEQFIVGDNIAIVSVKIETARICNLADKVTYWDVRNQTSNSXXXXXXXXXETWSV 741
            MGRRDRSLVSTLAIIGALAYVVTGVMRKRRKRAELGYYDGTIEPPLPPEVVALLHKCSLCYLSTFTDDHPHLSLMNFTYYQPDEVIIMSTRRDTKKYNLLQSSNNVAVLVHDFPGQRSRDGSSSSPPLHLSSDETGKMETFSITMNGRARIEAGEVAETYREEHRKNNPGSEQFIVGDNIAIVSVKIETARICNLADKVTYWDVRNQTSNSXXXXXXXXXETWSV
Sbjct:    1 MGRRDRSLVSTLAIIGALAYVVTGVMRKRRKRAELGYYDGTIEPPLPPEVVALLHKCSLCYLSTFTDDHPHLSLMNFTYYQPDEVIIMSTRRDTKKYNLLQSSNNVAVLVHDFPGQRSRDGSSSSPPLHLSSDETGKMETFSITMNGRARIEAGEVAETYREEHRKNNPGSEQFIVGDNIAIVSVKIETARICNLADKVTYWDVRNQTSNSXXXXXXXXXETWSV 225

[Close]

BLAST of jgi.p|Trimin1|36281 vs. uniprot
Match: A0A6H5KA57_9PHAE (Putative_PNPOx domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KA57_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 6.190e-49
Identity = 90/181 (49.72%), Postives = 122/181 (67.40%), Query Frame = 1

Query:  136 GVMRKRRKRAELGYYDGTIEPPLPPEVVALLHKCSLCYLSTFTDDHPHLSLMNFTYYQPDEVIIMSTRRDTKKYNLLQSSNNVAVLVHDFPGQRSRDGSSSSPPLHLSSDETGKMETFSITMNGRARIEAGEVAETYREEHRKNNPGSEQFIVGDNIAIVSVKIETARICNLADKVTYWDV 678
            GV+   ++     +++  + PPLP +VV LL    LC+LSTF+DDHPHLSLMNFTY+  DEVII+STRRDTKKY L+++  NVA+LVH+FP      GS        S  +       +IT+NG A I+ GE AE YR+ H + NP S+ FIVG NIAI++V++ +ARICN+ D+VT W+V
Sbjct:   86 GVVAAGKRLPAGSWHEADMTPPLPDDVVRLLQASRLCFLSTFSDDHPHLSLMNFTYHHADEVIILSTRRDTKKYQLVRTGRNVALLVHEFPDAG---GSXXXXXXXXSCSKV------TITLNGTATIQEGEQAEQYRDLHVRKNPDSKTFIVGPNIAIITVRVRSARICNVRDEVTVWNV 257

[Close]

BLAST of jgi.p|Trimin1|36281 vs. uniprot
Match: A0A8J2WY51_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WY51_9STRA)

HSP 1 Score: 164 bits (414), Expect = 4.130e-45
Identity = 91/194 (46.91%), Postives = 118/194 (60.82%), Query Frame = 1

Query:  100 LAIIGALAYVVTGVMRKRRKRAELGYYDGTIEPPLPPEVVALLHKCSLCYLSTFTDDHPHLSLMNFTYYQPDEVIIMSTRRDTKKYNLLQSSNNVAVLVHDFPGQ-RSRDGSSSSPPLHLSSDETGKMETFSITMNGRARIEAGEVAETYREEH-RKNNPGSEQFIVGDNIAIVSVKIETARICNLADKVTYWD 675
            +A+    AY +  +++++R  A+       + PP P EVV LL    LCYLST  D  PHLSLMNFTY   DE IIMSTRRDT KY  L  +  VAVL+HDFP + R R  ++S+     S D     +T+S+T+ G  ++E G  AE YR  H  +N  G  QFIVGDNI I++V ++ ARICN ADKV  WD
Sbjct:   16 IAVASYAAYQLGKLVQRKRHDAKNSTSCVELRPPFPDEVVQLLRSSVLCYLSTLADGAPHLSLMNFTYCPADEKIIMSTRRDTTKYRALLKNKRVAVLIHDFPAEERQRAAAASARAAGHSGDYA---QTYSVTLYGSVQVETGAAAERYRAMHLERNGAGQRQFIVGDNIGIITVLVDKARICNQADKVHIWD 206

[Close]

BLAST of jgi.p|Trimin1|36281 vs. uniprot
Match: A0A7S1U2J8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U2J8_9STRA)

HSP 1 Score: 161 bits (407), Expect = 3.460e-44
Identity = 87/167 (52.10%), Postives = 111/167 (66.47%), Query Frame = 1

Query:  190 IEPPLPPEVVALLHKCSLCYLSTFTDDH-PHLSLMNFTYYQPDEVIIMSTRRDTKKYNLLQSSNNVAVLVHDFPGQRSRDGSSSSPPLHLSSDETGKMETFSITMNGRARIEAGEVAETYREEHRKNNPGSEQFIVGDNIAIVSVKIETARICNLADKVTYWDVRNQ 687
            ++PPLP EVV LL   SLC+LST  +D  PHLSLM FTY Q +E I++STRR+T K+  L  + +VA+LVHDFP   +  G +          E  +  T+SIT+NG+A +E G+VAE YR  H   NP  EQFIVG +IAIVSV ++TARICN+ DKV YWD   Q
Sbjct:   55 VKPPLPAEVVGLLRSTSLCHLSTQGNDGGPHLSLMRFTYVQAEEKILISTRRNTAKFEYLSQNPSVALLVHDFPHLGAGGGEAEVDA------EEAEGRTYSITLNGQAHVEDGDVAECYRALHLAENPEYEQFIVGQDIAIVSVTVDTARICNIDDKVKYWDAAQQ 215

[Close]

BLAST of jgi.p|Trimin1|36281 vs. uniprot
Match: A0A7R9U5A5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5A5_9STRA)

HSP 1 Score: 147 bits (371), Expect = 5.280e-39
Identity = 88/179 (49.16%), Postives = 107/179 (59.78%), Query Frame = 1

Query:  145 RKRRKRAELGYYDGTIEPPLPPEVVALLHKCSLCYLSTF-TDDHPHLSLMNFTYYQPDEVIIMSTRRDTKKYNLLQSSNNVAVLVHDFPGQRSRDGSSSSPPLHLSSD-ETGKM-ETFSITMNGRARIEAGEVAETYREEHRKNNPGSEQFIVGDNIAIVSVKIETARICNLADKVTYW 672
            RK   R  L      + PPLP EVV LL   SLC+LST   D  PHLSLM FTY   +E II+STRR ++K++ L+ +  VA+LVHDFP              H+  + E G+   TFSIT+NG A IE G+    YR  H + NP  EQFIVG NIAIVSV + +ARICNL DKV  W
Sbjct:   33 RKNGTRTGLHQQTKELTPPLPREVVRLLKSTSLCHLSTQGVDGTPHLSLMRFTYLPAEEKIIISTRRSSQKFDFLEQNPLVALLVHDFP--------------HMQDEGERGECGRTFSITLNGSASIETGDAEARYRALHLQENPEYEQFIVGPNIAIVSVTVTSARICNLQDKVKVW 197

[Close]

BLAST of jgi.p|Trimin1|36281 vs. uniprot
Match: A0A813LGU8_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813LGU8_POLGL)

HSP 1 Score: 145 bits (367), Expect = 6.260e-38
Identity = 83/166 (50.00%), Postives = 104/166 (62.65%), Query Frame = 1

Query:  190 IEPPLPPEVVALLHKCSLCYLSTFTDD----HPHLSLMNFTYYQPDEVIIMSTRRDTKKYNLLQSSNNVAVLVHDFPGQRSRDGSSSSPPLHLSSDETGKMETFSITMNGRARIEAGEVAET-YREEHRKNNPGSEQFIVGDNIAIVSVKIETARICNLADKVTYW 672
            + PPLP  VV LL    L YLST T D     PHLSLMNFTY   DEVIIM+TRRDT+KY+ L     VA+LVHDFP  R ++          +SD+ G   T+SIT+ G+  + A    E  YR+ H +NNPGS  FIVG+NI+++ V +E AR+CN  DKVT W
Sbjct:   79 VRPPLPVPVVKLLQSSRLGYLSTATHDAGSTSPHLSLMNFTYVPTDEVIIMTTRRDTQKYHNLLGQPRVAMLVHDFPTLRDQE----------TSDDIGFSRTYSITLYGKVGLPANSAQEEKYRQIHLENNPGSSGFIVGENISVLIVCVEFARLCNSDDKVTTW 234

[Close]

BLAST of jgi.p|Trimin1|36281 vs. uniprot
Match: K8Z3W1_NANGC (Pyridoxamine phosphate n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z3W1_NANGC)

HSP 1 Score: 144 bits (363), Expect = 1.000e-37
Identity = 88/183 (48.09%), Postives = 105/183 (57.38%), Query Frame = 1

Query:  190 IEPPLPPEVVALLHKCSLCYLSTF-TDDHPHLSLMNFTYYQPDEVIIMSTRRDTKKYNLLQSSNNVAVLVHDFPG----QRSRDGSSSSPPLHLSSDETGKM-----------ETFSITMNGRARIEAGEVAETYREEHRKNNPGSEQFIVGDNIAIVSVKIETARICNLADKVTYWDVRNQT 690
            I PPLPP VVALL    +C+LST  TD  PHLSLM FTY + +EVIIM+TR DTKKY LL S   VAVL     G    +   +G S  P  H                     T++IT+NG AR+E GE AE YR  H KNN    QFI G  IA+ +V + +ARICN+ D+VTYWD R  T
Sbjct:   12 IFPPLPPTVVALLQSTRVCHLSTASTDGLPHLSLMRFTYRREEEVIIMTTRTDTKKYELLCSMPKVAVLGEKGGGVGGNEDGGEGGSKRPHRHEKEXXXXXXXXXXXXXXXXGHTYAITLNGVARMETGEEAERYRSLHLKNNVAYSQFIEGPGIAVFTVHVMSARICNVKDRVTYWDKRTAT 194

[Close]

BLAST of jgi.p|Trimin1|36281 vs. uniprot
Match: A0A7S2FVB3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FVB3_9STRA)

HSP 1 Score: 140 bits (354), Expect = 2.290e-36
Identity = 87/214 (40.65%), Postives = 116/214 (54.21%), Query Frame = 1

Query:   64 TMGRR-----DRSLVSTLAIIGALAYVVTGVMRKRRKRAELGYYDGTIEPPLPPEVVALLHKCSLCYLSTFTDDHPHLSLMNFTYYQPDEVIIMSTRRDTKKYNLLQSSNNVAVLVHDFPGQRSRDGSSSSPPLHLSSDETGKMETFSITMNGRARI-EAGEVAETYREEHRKNNPGSEQFIVGDNIAIVSVKIETARICNLADKVTYWDVRNQ 687
            TM RR         VS L I+  + ++     ++     +     G I PP P  VV LL   SLCYLST     PHLSLM+FTY Q +E+I+ +TRR+T K+  L  S +VA+L+HDFPG  S         L     E     T+++T+ GRA + E G  +E  RE+H    P S  FI GD+IA+V+V I TAR+C+ ADKVT W    Q
Sbjct:    9 TMDRRILLPLGMGFVSGLVIMMGVNHLKQKAKQRDEAPRKRALSAGDIRPPFPAPVVKLLDSASLCYLSTTHAGAPHLSLMHFTYVQHEELIVFTTRRNTLKHRNLVKSPDVAILIHDFPGLTSE-----GQVLDGEGGEKTYSRTYAVTLYGRAYVLEEGPDSERLREKHLARQPESAVFIKGDDIAVVTVLIHTARLCDSADKVTEWSSTGQ 217

[Close]

BLAST of jgi.p|Trimin1|36281 vs. uniprot
Match: W7TPF1_9STRA (Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TPF1_9STRA)

HSP 1 Score: 140 bits (352), Expect = 1.000e-34
Identity = 93/233 (39.91%), Postives = 109/233 (46.78%), Query Frame = 1

Query:  190 IEPPLPPEVVALLHKCSLCYLSTF-TDDHPHLSLMNFTYYQPDEVIIMSTRRDTKKYNLLQSSNNVAVLVHDFPGQRSRD------------------------------------------------------GSSSSPPLHLSSDETGKM-----------ETFSITMNGRARIEAGEVAETYREEHRKNNPGSEQFIVGDNIAIVSVKIETARICNLADKVTYWDVRNQT 690
            I PPLPP VVALL    +C+LST  TD  PHLSLM FTY + +EVIIM+TR DTKKY LL S   VAVLVHDFP  R  +                                                      G S  P  H                     T++IT+NG AR+E GE AE YR  H KNN    QFI G  IA+ +V + +ARICN+ D+VTYWD R  T
Sbjct:   91 IFPPLPPTVVALLQSTRVCHLSTASTDGLPHLSLMRFTYRREEEVIIMTTRTDTKKYELLCSMPKVAVLVHDFPSLRDEEDKEXXXXXXXXXXVRSDIGDRAGEVSAKFRGNAFCGHGKGEKGGGVGGNEDGGEGGSKRPHRHEKEXXXXXXXXXXXXXXXXGHTYAITLNGVARMETGEEAERYRSLHLKNNVAYSQFIEGPGIAVFTVHVMSARICNVKDRVTYWDKRTAT 323

[Close]

BLAST of jgi.p|Trimin1|36281 vs. uniprot
Match: R1BTA8_EMIHU (Putative_PNPOx domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BTA8_EMIHU)

HSP 1 Score: 137 bits (344), Expect = 1.350e-34
Identity = 77/178 (43.26%), Postives = 111/178 (62.36%), Query Frame = 1

Query:  181 DGTIEPPLPPEVVALLHKCSLCYLSTFTDDHPHLSLMNFTYYQP-------DEVIIMSTRRDTKKYNLLQSSNNVAVLVHDFPGQRSRDGSSSSPPLHLSSDETGKMETFSITMNGRARIEAGEVAETYREEHRKNNPGSEQFIVGDNIAIVSVKIETARICNLADKVTYWDVRNQTS 693
            D    PPLP  VV +L +C LC+L+T + D PHLSLM F++ +         EV+I+STRR TKKY  L ++ NVA+LVHDF G+   D         L+          SIT++G  R E+GE+AE YR  H + N    QFIVGD+IAI++V+IETAR+C++ D+V++++ + + S
Sbjct:   66 DADFTPPLPEPVVQVLTRCCLCFLATSSGDSPHLSLMRFSFSRSLAAQRPGAEVLIVSTRRSTKKYATLCANRNVALLVHDFAGENESD--------LLNYTALEGRPRHSITLSGVVREESGEMAERYRAIHLEKNQAYAQFIVGDDIAILTVEIETARVCDVNDRVSHFERQQRGS 235

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|36281 vs. uniprot

BLAST of jgi.p|Trimin1|36281 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835ZAR3_9STRA	1.990e-150	100.00	Putative_PNPOx domain-containing protein n=1 Tax=T...	[more]
A0A6H5KA57_9PHAE	6.190e-49	49.72	Putative_PNPOx domain-containing protein n=2 Tax=E...	[more]
A0A8J2WY51_9STRA	4.130e-45	46.91	Hypothetical protein n=1 Tax=Pelagomonas calceolat...	[more]
A0A7S1U2J8_9STRA	3.460e-44	52.10	Hypothetical protein n=1 Tax=Phaeomonas parva TaxI...	[more]
A0A7R9U5A5_9STRA	5.280e-39	49.16	Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi...	[more]
A0A813LGU8_POLGL	6.260e-38	50.00	Hypothetical protein n=1 Tax=Polarella glacialis T...	[more]
K8Z3W1_NANGC	1.000e-37	48.09	Pyridoxamine phosphate n=1 Tax=Nannochloropsis gad...	[more]
A0A7S2FVB3_9STRA	2.290e-36	40.65	Hypothetical protein n=1 Tax=Florenciella parvula ...	[more]
W7TPF1_9STRA	1.000e-34	39.91	Pyridoxamine 5'-phosphate oxidase-related FMN-bind...	[more]
R1BTA8_EMIHU	1.350e-34	43.26	Putative_PNPOx domain-containing protein n=2 Tax=E...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_193	contig	Contig_193:222703..226670 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|36281\|CE36280_72
Description	Pyridoxamine 5'-phosphate oxidase
COG category	S
Max annot lvl	2759\|Eukaryota
EggNOG OGs	2E0VY@1\|root,2S89E@2759\|Eukaryota
Evalue	1.52e-51
Seed ortholog	2880.D8LSL0
Hectar predicted targeting category	signal peptide
TranscriptId	36603
Track	FilteredModels1
ProteinId	36281

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|36281	gene_16866	Tribonema minus UTEX_B_3156	gene	Contig_193 222703..226670 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|36281	Trimin1\|36281\|CE36280_72	Tribonema minus UTEX_B_3156	polypeptide	Contig_193 222769..226297 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_16866_1	exon_16866_1	Tribonema minus UTEX_B_3156	exon	Contig_193 222703..222915 +
exon_16866_2	exon_16866_2	Tribonema minus UTEX_B_3156	exon	Contig_193 223476..223580 +
exon_16866_3	exon_16866_3	Tribonema minus UTEX_B_3156	exon	Contig_193 224735..224938 +
exon_16866_4	exon_16866_4	Tribonema minus UTEX_B_3156	exon	Contig_193 225793..225855 +
exon_16866_5	exon_16866_5	Tribonema minus UTEX_B_3156	exon	Contig_193 226139..226670 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_16866	UTR5_16866	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_193 222703..222768 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_16866	CDS_16866	Tribonema minus UTEX_B_3156	CDS	Contig_193 222769..222915 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_16866	UTR3_16866	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_193 226298..226670 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_193:222703..226670+
coding sequence from alignment at Contig_193:222703..226670+

spliced messenger RNA

>mRNA_16866 ID=mRNA_16866|Name=jgi.p|Trimin1|36281|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1117bp|location=Sequence derived from alignment at Contig_193:222703..226670+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCTAGACGCAGCCTGTGTGTGCCTGCAGATTCGGATTGCGTTGTCACCGC
TTGGTGGTAATTGACCATGGGCAGGCGTGATCGTAGCCTCGTGAGCACCC
TGGCCATCATCGGAGCGCTGGCGTATGTAGTCACCGGCGTCATGAGAAAG
CGGCGGAAGAGAGCAGAGCTGGGGTACTATGATGGAACCATCGAGCCGCC
ACTTCCTCCTGAGGTAGTGGCACTTCTGCACAAATGCAGCCTGTGCTACC
TCAGCACCTTCACGGACGACCACCCGCACCTCAGCCTCATGAACTTCACC
TACTACCAACCTGATGAGGTGATCATTATGTCAACTCGCCGTGACACCAA
GAAGTACAACCTGCTGCAGAGCAGCAACAATGTGGCAGTGCTGGTCCACG
ACTTCCCGGGGCAGCGCTCTAGGGATGGCTCATCATCATCACCACCCCTC
CACCTGAGCAGCGATGAAACTGGCAAGATGGAAACCTTCTCCATCACCAT
GAATGGACGTGCACGCATCGAGGCTGGCGAAGTGGCTGAGACGTACCGAG
AGGAGCACCGCAAGAACAACCCCGGCAGTGAACAGTTCATTGTCGGAGAC
AACATTGCGATTGTTTCTGTCAAGATCGAGACCGCACGCATATGCAACCT
GGCTGACAAGGTCACTTACTGGGATGTGAGGAACCAAACAAGCAACAGCA
ACCAGCAGCAACAGCAGCAGCAGCAGGAGACCTGGTCAGTCTGAGACTGC
AAGTGTCCTCGTGACACATAGCAAAGTACACACGTTCACGATGCGGTACG
AGGAGCTTTGCCGCATGGCAGCGTCATGTCTTTTGGACACCTGCGCCTGC
AATGGAAACGTGGTAGCATTGCGCTTTCGCGATCTCATCGTCGCAATGAG
CATGCATTCGGCAGTAGAAGCTCACGTAACAGCTCATGCAGCTACAGCGT
CGGCAGCTAGGTCGTTGTCGCTGTATGCCTACCAGAAGCCTGTGTTGCTC
TCTTTGTGTGCACTTGGCTCTTGGACTCCCAGCTCACAACTGACCTTGTT
TTATGGTGAGATCCCTTCATCTTTGTGCCATGCCATGGTCTGCTTGTCAA
TGAAAATAGTTTTAAGC

protein sequence of jgi.p|Trimin1|36281

>Trimin1|36281|CE36280_72 ID=Trimin1|36281|CE36280_72|Name=jgi.p|Trimin1|36281|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=226bp
MGRRDRSLVSTLAIIGALAYVVTGVMRKRRKRAELGYYDGTIEPPLPPEV
VALLHKCSLCYLSTFTDDHPHLSLMNFTYYQPDEVIIMSTRRDTKKYNLL
QSSNNVAVLVHDFPGQRSRDGSSSSPPLHLSSDETGKMETFSITMNGRAR
IEAGEVAETYREEHRKNNPGSEQFIVGDNIAIVSVKIETARICNLADKVT
YWDVRNQTSNSNQQQQQQQQETWSV*

mRNA from alignment at Contig_193:222703..226670+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_16866 ID=mRNA_16866|Name=jgi.p|Trimin1|36281|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3968bp|location=Sequence derived from alignment at Contig_193:222703..226670+ (Tribonema minus UTEX_B_3156 )
GCTAGACGCAGCCTGTGTGTGCCTGCAGATTCGGATTGCGTTGTCACCGC
TTGGTGGTAATTGACCATGGGCAGGCGTGATCGTAGCCTCGTGAGCACCC
TGGCCATCATCGGAGCGCTGGCGTATGTAGTCACCGGCGTCATGAGAAAG
CGGCGGAAGAGAGCAGAGCTGGGGTACTATGATGGAACCATCGAGCCGCC
ACTTCCTCCTGAGGTGCGTGTCAGGCGCTGGTGCGGATTACTGATTGCTG
TCATACGATGCGGGCTTCGTACGCAATCCAACGGGACAGTGCGTTCTGAA
ATTCGAGGCCTTTACTGATTTGCACGATTAAAGCAGAGGCAGATAATTTT
GAAATCAAGCCTGATTTGAACAGGTAGATGTACAAGCAGAAGTGATGTAT
TCGATGTCATTTGCCGTCCAGTCAAAAACAACGCTGATAACTGCCCTGAT
CACCACGCTGGCAACGCTGATGATCTGCTAGGTTCAAACAGTCACAGCGA
GCAGGAAGCAGGATGCTTGTGTCACTCATTGTCGGAGCCTTTGTATCTGA
AGCAAGAACCTACCTGTCGTGCCTCTTTTCTTCAGAATTGCAGTTTTCTC
ATGCTTTTTCATCATAAAGCGCTGCTCAGTCTTCTGGATTTGTTCATCAC
ATGAAGCCCTTTTTCGCCAGCGCCAATGCATTACAATGAGTCGCTCTGAT
GTCACATGCCACCCAGCCGGTAGCATGTGCAACAAGCATCACATAATTGA
TGGCCGTCGTTTGTGCGTGACAGGTAGTGGCACTTCTGCACAAATGCAGC
CTGTGCTACCTCAGCACCTTCACGGACGACCACCCGCACCTCAGCCTCAT
GAACTTCACCTACTACCAACCTGATGAGGTACGCCATTCACTACTATCAA
AAAGCAAGTTGCCTTAGGTACTGAGTCGGGACTAGGGCTGCCATCGGCTT
AGATGGTAGTCTGCGAGGCACACCTATGTTGCAGTACAGGGCATGTATGC
TCATTGAACTTGCAATGATTGAAGTAAATCTGCACCAACGGCTCATGCTT
AAAGCCTGATTCTCTGATGATGATACGATTCATCGATCATACGTTTTACT
GCTTCCAGTGTCATGTATGTCATGGAGGCATTGCTTTTCCATGCTTTGAA
GTAGTTGAATTTAGGGCCACTGAGACTCAAAAGTGTACATGGCCTGGCTT
TCCAACTGTGTATACACTCTGAAAAAGCCATAGCCGACTTTTGGCATCAA
AGTAATTGAGTCCACAGGCACAATGTTCTAAAGTGGCATGACTTACATGT
TCATCTGTGGTACTGCTGCAATCTGGCATCACTACATGTCAACTTGCATC
CCGGGAACGTGTTGGGGATTGACTTCTAGAGTTACCGCTACAACATTGCT
GCTGTTGAAAGCTGCACTCAGATCCTTGGAGGTCATGGTCCGCACATCCC
ACATCGCTCTCACATGGCTGCCGGCAAGGTGTCCGGATTGCTCTTTGGTG
CACTTCTGCTTGCCCTCGCCCAAATCGTTCTTTCCGTGCCTTCGCAAACA
GTCATACGCATCACAAGAGAATCACGTTGCTACAGTGTGACTGTAATGGG
TGTCTTGTAGATGTAACCTACAGTAGTCTGCCTGCTGTGCACCTGCACTT
TATCACTAGGGCATGGTTTTGCCTGGCAATAGTGACATGCACCTCTGACA
TGCCTTTGCTTTCATCCATTAGATGGTTGTGGTGTCACCAAAGCTCGTCA
CAATCAGTGCAACAGCTTGCAGTCAGCAACAATGTGGCAGTGCTCGTGCG
CGTTGTTCACAGCTCAAACTCTTAGCACTTCAAGTGGTGTTGCAGTGAAT
TCTATCAATCAACATGCCGCTGTGCCATGTTTGATGAGTACTATGATGTT
TCAATTGTATACATGATTTTGATGCATGTAATCCTTGAGGCATGCAAATG
GTCGACTTGTGAAGCATGTGTTCATGCCCTGACCATGACTACCTTAAACT
GCCCTTCACCTCATCCGTCTCATTCCATCCAGGTGATCATTATGTCAACT
CGCCGTGACACCAAGAAGTACAACCTGCTGCAGAGCAGCAACAATGTGGC
AGTGCTGGTCCACGACTTCCCGGGGCAGCGCTCTAGGGATGGCTCATCAT
CATCACCACCCCTCCACCTGAGCAGCGATGAAACTGGCAAGATGGAAACC
TTCTCCATCACCATGAATGGACGTGCACGCATCGAGGTCAGCTGCTGCTG
CTGCTGCTGCTGTCGCGTACCTTTGGCATGTGTGCAGTCAGCCGCACTAA
TTTGGAGTAAGCAGCAGCGTGCAGCAATGTTTCTTTGCAGAATGATGTCA
TTCCACCTGAGAATTGCAGTTAGTCAAGTCAGTACACAAGTGCTCTGATA
AGCGTGTAGTTCCAAGTACACGTGTACATTATATATGGTAGCCAGAGGTA
TGATATTTCAGCCAGGCAATCTTGATGATGATGTATGCGCGCGCTCCACA
ACAGCTTGTGCACATCCACATGAGCATTGTGCAGTTCTTGTAGCAGAGGC
CTCAAATAGCAGCACAAGGCTTTGCGGTGCTGAGCTCTGATGCCCATGCT
GACTTCACTGCTTATGCTGCTGGTCAAGTGCGAACGGCACGCTGCTCTGC
GGATATGCGATACGACTGCCTTTACTGCCACACCTGAGTCTAAGAATTTG
CACCAGGGCTTGTGTTTGTGTCGTCAGGTAGCTTGTCGCACCAGCATAAA
ACCAGACGCTCGGCAGCTGATGAACAATGCCTAACATGATGCTGACGAAC
GGCTGATTTATATTGACTGCTTTGTTGTGACAGCGCACAGCTCAGCTCAT
GTTGAGGTTTGGGTTCTTGAGCACTGACGTGGCTGTTCATGTTTGCCTCC
TGGGTTCTCAATGATCACTCTTCTAGCAACACATGCACTAGCCGCGAGTC
TTGTGTCTGCTTGGGTCCCTAGGTTGTCCATTCCTGGCACGGTGGTGAGC
TTTACGCTCTCAGTTTGGACAATTTGTTTGCCCCCACACTGACCTGCCAG
ACGTGATCCTGTTGCCCTGCGATGCTGGTGCTCCATGCAGGCTGGCGAAG
TGGCTGAGACGTACCGAGAGGAGCACCGCAAGAACAACCCCGGCAGTGAA
CAGGTGATGACTTGAAGCACGTCACCTGTTCTGCCGTAACTACTCTGCTG
TTGCGCTGTACAAGGCGCAGCGTTTTCCATGCATGCAGCATTGCAGGTGC
ATGATTGTTTTGCACACACTGTTGGATATCACACCTGGCTTTTGACTGTT
GCGCAGCAAGCGGCAACTGCATGAAACTCAACGACAAATGCACCCTTGTG
TGATGTCATTTCTCAAAGCATGTGCGCATTCCACTCTCACACTTCACTTC
ACTTGACTCCTTGTGCGCTGTATCTCTGTGTTGCAGTTCATTGTCGGAGA
CAACATTGCGATTGTTTCTGTCAAGATCGAGACCGCACGCATATGCAACC
TGGCTGACAAGGTCACTTACTGGGATGTGAGGAACCAAACAAGCAACAGC
AACCAGCAGCAACAGCAGCAGCAGCAGGAGACCTGGTCAGTCTGAGACTG
CAAGTGTCCTCGTGACACATAGCAAAGTACACACGTTCACGATGCGGTAC
GAGGAGCTTTGCCGCATGGCAGCGTCATGTCTTTTGGACACCTGCGCCTG
CAATGGAAACGTGGTAGCATTGCGCTTTCGCGATCTCATCGTCGCAATGA
GCATGCATTCGGCAGTAGAAGCTCACGTAACAGCTCATGCAGCTACAGCG
TCGGCAGCTAGGTCGTTGTCGCTGTATGCCTACCAGAAGCCTGTGTTGCT
CTCTTTGTGTGCACTTGGCTCTTGGACTCCCAGCTCACAACTGACCTTGT
TTTATGGTGAGATCCCTTCATCTTTGTGCCATGCCATGGTCTGCTTGTCA
ATGAAAATAGTTTTAAGC

Coding sequence (CDS) from alignment at Contig_193:222703..226670+

>mRNA_16866 ID=mRNA_16866|Name=jgi.p|Trimin1|36281|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=678bp|location=Sequence derived from alignment at Contig_193:222703..226670+ (Tribonema minus UTEX_B_3156 )
ATGGGCAGGCGTGATCGTAGCCTCGTGAGCACCCTGGCCATCATCGGAGC
GCTGGCGTATGTAGTCACCGGCGTCATGAGAAAGCGGCGGAAGAGAGCAG
AGCTGGGGTACTATGATGGAACCATCGAGCCGCCACTTCCTCCTGAGGTA
GTGGCACTTCTGCACAAATGCAGCCTGTGCTACCTCAGCACCTTCACGGA
CGACCACCCGCACCTCAGCCTCATGAACTTCACCTACTACCAACCTGATG
AGGTGATCATTATGTCAACTCGCCGTGACACCAAGAAGTACAACCTGCTG
CAGAGCAGCAACAATGTGGCAGTGCTGGTCCACGACTTCCCGGGGCAGCG
CTCTAGGGATGGCTCATCATCATCACCACCCCTCCACCTGAGCAGCGATG
AAACTGGCAAGATGGAAACCTTCTCCATCACCATGAATGGACGTGCACGC
ATCGAGGCTGGCGAAGTGGCTGAGACGTACCGAGAGGAGCACCGCAAGAA
CAACCCCGGCAGTGAACAGTTCATTGTCGGAGACAACATTGCGATTGTTT
CTGTCAAGATCGAGACCGCACGCATATGCAACCTGGCTGACAAGGTCACT
TACTGGGATGTGAGGAACCAAACAAGCAACAGCAACCAGCAGCAACAGCA
GCAGCAGCAGGAGACCTGGTCAGTCTGA