mRNA_16838 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|353175
Unique NamemRNA_16838
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|353175 vs. uniprot
Match: A0A836CMZ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMZ6_9STRA)

HSP 1 Score: 367 bits (942), Expect = 1.840e-128
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 1 
Query:    1 MELPDAVTKYLEESLKRKGCTVLAREWDVRGGPHLGKGDLVVLLPCNTHLVVEVKYLDFDATGRNQCVKRRKHRRYVEEQAPRYGAKWAEHYALHNQLVLSAFFTNETGLSGFALDVQRPLQKQETDEAESNMGVGWIGAGVVGLAAIAGAIAVSAARQQRQCEDNGNRNAEQQRERDEKECIVS 555
            MELPDAVTKYLEESLKRKGCTVLAREWDVRGGPHLGKGDLVVLLPCNTHLVVEVKYLDFDATGRNQCVKRRKHRRYVEEQAPRYGAKWAEHYALHNQLVLSAFFTNETGLSGFALDVQRPLQKQETDEAESNMGVGWIGAGVVGLAAIAGAIAVSAARQQRQCEDNGNRNAEQQRERDEKECIVS
Sbjct:    1 MELPDAVTKYLEESLKRKGCTVLAREWDVRGGPHLGKGDLVVLLPCNTHLVVEVKYLDFDATGRNQCVKRRKHRRYVEEQAPRYGAKWAEHYALHNQLVLSAFFTNETGLSGFALDVQRPLQKQETDEAESNMGVGWIGAGVVGLAAIAGAIAVSAARQQRQCEDNGNRNAEQQRERDEKECIVS 185
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BLAST of jgi.p|Trimin1|353175 vs. uniprot
Match: A0A835YVQ4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVQ4_9STRA)

HSP 1 Score: 102 bits (254), Expect = 3.820e-23
Identity = 51/85 (60.00%), Postives = 63/85 (74.12%), Query Frame = 1 
Query:   25 KYLEESLKRKGCTVLAREWDVRGG-PHLGKGDLVVLLPCNTHLVVEVKYLDFDATGRNQCVKRRKHRRYVEEQAPRYGAKWAEHY 276
            ++L++ L++ GC VLA EWDV  G P+ G GDLVV LPC THLV E+K+LDF A G    VKRRKHRR VE+QA RYG+ WA+ Y
Sbjct:   36 EWLKQHLQQLGCEVLAEEWDVVPGMPNCGVGDLVVELPCGTHLVTEIKFLDFYAHGNTATVKRRKHRREVEQQACRYGSLWAKQY 120
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353175 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CMZ6_9STRA1.840e-128100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YVQ4_9STRA3.820e-2360.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_147contigContig_147:351196..352772 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|353175|estExt_Genemark1.C_Ctg_1470031
Max annot lvl1117|Cyanobacteria
EggNOG OGs2CHZJ@1|root,2ZB81@2|Bacteria,1G41M@1117|Cyanobacteria,1HMGD@1161|Nostocales
Evalue0.001
Seed ortholog1337936.IJ00_26645
Hectar predicted targeting categoryother localisation
TranscriptId353497
TrackFilteredModels1
ProteinId353175
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353175gene_16838Tribonema minus UTEX_B_3156 geneContig_147 351196..352772 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16838_1exon_16838_1Tribonema minus UTEX_B_3156 exonContig_147 351196..351207 +
exon_16838_2exon_16838_2Tribonema minus UTEX_B_3156 exonContig_147 351655..351801 +
exon_16838_3exon_16838_3Tribonema minus UTEX_B_3156 exonContig_147 352314..352499 +
exon_16838_4exon_16838_4Tribonema minus UTEX_B_3156 exonContig_147 352560..352772 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16838CDS_16838Tribonema minus UTEX_B_3156 CDSContig_147 351196..351207 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353175Trimin1|353175|estExt_Genemark1.C_Ctg_1470031Tribonema minus UTEX_B_3156 polypeptideContig_147 351196..352772 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16838 ID=mRNA_16838|Name=jgi.p|Trimin1|353175|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=558bp|location=Sequence derived from alignment at Contig_147:351196..352772+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCTGCCGGACGCTGTGACCAAGTACCTCGAGGAAAGCCTGAAGCG
GAAGGGTTGCACCGTGCTCGCAAGAGAGTGGGACGTGCGAGGTGGGCCGC
ACCTCGGCAAGGGGGACCTGGTTGTACTGCTGCCCTGCAATACGCATCTG
GTCGTGGAGGTCAAGTATCTGGATTTCGATGCGACAGGCCGCAACCAATG
CGTCAAGAGGCGCAAGCACAGGCGCTATGTCGAGGAGCAAGCGCCGCGGT
ACGGCGCTAAATGGGCAGAGCACTACGCCCTGCACAACCAGCTGGTGCTG
AGCGCCTTTTTCACCAACGAGACTGGCCTGAGTGGCTTTGCGCTGGATGT
GCAGCGGCCGTTGCAGAAGCAGGAGACTGACGAAGCTGAGTCCAACATGG
GTGTCGGTTGGATTGGTGCTGGGGTGGTTGGGCTGGCCGCCATTGCAGGC
GCAATTGCTGTCAGCGCTGCGCGGCAGCAGCGCCAATGTGAGGACAACGG
CAACAGGAATGCGGAGCAGCAACGCGAGCGAGATGAGAAAGAGTGCATCG
TGAGCTAG
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protein sequence of jgi.p|Trimin1|353175

>Trimin1|353175|estExt_Genemark1.C_Ctg_1470031 ID=Trimin1|353175|estExt_Genemark1.C_Ctg_1470031|Name=jgi.p|Trimin1|353175|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=186bp
MELPDAVTKYLEESLKRKGCTVLAREWDVRGGPHLGKGDLVVLLPCNTHL
VVEVKYLDFDATGRNQCVKRRKHRRYVEEQAPRYGAKWAEHYALHNQLVL
SAFFTNETGLSGFALDVQRPLQKQETDEAESNMGVGWIGAGVVGLAAIAG
AIAVSAARQQRQCEDNGNRNAEQQRERDEKECIVS*
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mRNA from alignment at Contig_147:351196..352772+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16838 ID=mRNA_16838|Name=jgi.p|Trimin1|353175|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1577bp|location=Sequence derived from alignment at Contig_147:351196..352772+ (Tribonema minus UTEX_B_3156 )
ATGGAGCTGCCGGTGAGCGTTGGCAGGCTGGGCTACTTACAATACGTTGC
TCCTGTGCCTTACGCGGCCTCACTAAGTGTCACTCAGCTGGTATGCTGCC
CTGCGGCTCGATTTTTCTATGCGCCAGCACACTGGAAGGGGAACCCTAGT
TGTGGCCCTCCTACCAATTCTTGTTTTTGTGTCGCACCTTATGAAACACG
AGGAAACGAGAGGCACAAAAATTGGAATTGGTGGGAAAGCCCTACCTCCC
CCCCCCTACTTATTAACACCACTGATTCCAGAGAATTTCTTTTTTTCTCT
TTTTTCGCCCCCTCCGCCCAACCCTGTTGAGAATTTGCCGCAAATTGGAC
ACGCACGTCCGTGATGTCATGCTGCAGCGGCTGCAGCAGCCTCAGCCCCG
GCCATCTCCCCAGAGTAGGGCCGCCATCTCGTGCTCTCATCACTAGTAGC
GGTGGTGAGGACGCTGTGACCAAGTACCTCGAGGAAAGCCTGAAGCGGAA
GGGTTGCACCGTGCTCGCAAGAGAGTGGGACGTGCGAGGTGGGCCGCACC
TCGGCAAGGGGGACCTGGTTGTACTGCTGCCCTGCAATACGCATCTGGTC
GTGGAGGTGGGTCGTGCACATGGCGGACTCGTCTGCCTGGTTTCGGTAGA
TTTAACCAAGCATCGCGCAGAGTGCGTTCAGCCGGCACAGGCATGCAGGT
CATGATTGGTTGAGGCAAGCTTTGCGGCGTTGCAGTCCGTAGTACGTTGC
AGAAAGTATAGCCTCTGTAGCGTGCTCCATTACCCTGGCGCCTCGACCCG
TGACAAACGTGATGTCAGCACCCCTGATTTGCAACTCTCGCGAGGAGAAA
GTGATAGTCCGTGGGCTCTTTGCTGCCTTCACCAACCACTGAAGTTGCAA
TAATCATCAGGATGTTCACCATCGGTGTCCTACTCAATAGACCCCGTTAG
CCTGTGCACGTCACGTTCGTGCAATCTGCGTCATACTTCAACACCGTGCC
TCACTCTTTTTTAAAAACCTCAGACTTCAACAATGTACCTCACACTTCAA
TATCGTGCCTCACACATGTCTCTTAACTATGACAACGCACACATCTCTCA
CACATGCCGGTCTTGCAGGTCAAGTATCTGGATTTCGATGCGACAGGCCG
CAACCAATGCGTCAAGAGGCGCAAGCACAGGCGCTATGTCGAGGAGCAAG
CGCCGCGGTACGGCGCTAAATGGGCAGAGCACTACGCCCTGCACAACCAG
CTGGTGCTGAGCGCCTTTTTCACCAACGAGACTGGCCTGAGTGGCTTTGC
GCTGGTGCCAGGCACTGGCATGCTGGTGCATGATCATGCACGTATGCCGC
GCGTGACTTCCCAGGATGTGCAGCGGCCGTTGCAGAAGCAGGAGACTGAC
GAAGCTGAGTCCAACATGGGTGTCGGTTGGATTGGTGCTGGGGTGGTTGG
GCTGGCCGCCATTGCAGGCGCAATTGCTGTCAGCGCTGCGCGGCAGCAGC
GCCAATGTGAGGACAACGGCAACAGGAATGCGGAGCAGCAACGCGAGCGA
GATGAGAAAGAGTGCATCGTGAGCTAG
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Coding sequence (CDS) from alignment at Contig_147:351196..352772+

>mRNA_16838 ID=mRNA_16838|Name=jgi.p|Trimin1|353175|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=558bp|location=Sequence derived from alignment at Contig_147:351196..352772+ (Tribonema minus UTEX_B_3156 )
ATGGAGCTGCCGGACGCTGTGACCAAGTACCTCGAGGAAAGCCTGAAGCG
GAAGGGTTGCACCGTGCTCGCAAGAGAGTGGGACGTGCGAGGTGGGCCGC
ACCTCGGCAAGGGGGACCTGGTTGTACTGCTGCCCTGCAATACGCATCTG
GTCGTGGAGGTCAAGTATCTGGATTTCGATGCGACAGGCCGCAACCAATG
CGTCAAGAGGCGCAAGCACAGGCGCTATGTCGAGGAGCAAGCGCCGCGGT
ACGGCGCTAAATGGGCAGAGCACTACGCCCTGCACAACCAGCTGGTGCTG
AGCGCCTTTTTCACCAACGAGACTGGCCTGAGTGGCTTTGCGCTGGATGT
GCAGCGGCCGTTGCAGAAGCAGGAGACTGACGAAGCTGAGTCCAACATGG
GTGTCGGTTGGATTGGTGCTGGGGTGGTTGGGCTGGCCGCCATTGCAGGC
GCAATTGCTGTCAGCGCTGCGCGGCAGCAGCGCCAATGTGAGGACAACGG
CAACAGGAATGCGGAGCAGCAACGCGAGCGAGATGAGAAAGAGTGCATCG
TGAGCTAG
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