mRNA_16813 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|177193
Unique NamemRNA_16813
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|177193 vs. uniprot
Match: A0A835ZHY6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHY6_9STRA)

HSP 1 Score: 163 bits (413), Expect = 1.850e-49
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 1 
Query:    1 PCPPGSFAPQTGMPFCYKARPGRYVAGHGAVTDTDCPTGATXXXXXXXXXXXXXXXXXXGTFMPQKRASRCYQAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVDSGEWPAATPSHTAARASRYASRPPSA 405
            PCPPGSFAPQTGMPFCYKARPGRYVAGHGAVTDTDCPTGATXXXXXXXXXXXXXXXXXXGTFMPQKRASRCYQAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVDSGEWPAATPSHTAARASRYASRPPSA
Sbjct:    1 PCPPGSFAPQTGMPFCYKARPGRYVAGHGAVTDTDCPTGATXXXXXXXXXXXXXXXXXXGTFMPQKRASRCYQAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVDSGEWPAATPSHTAARASRYASRPPSA 135
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|177193 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZHY6_9STRA1.850e-49100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_147contigContig_147:61661..63806 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|177193|e_gw1.147.34.1
Hectar predicted targeting categoryother localisation
TranscriptId177515
TrackFilteredModels1
ProteinId177193
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177193gene_16813Tribonema minus UTEX_B_3156 geneContig_147 61661..63806 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177193Trimin1|177193|e_gw1.147.34.1Tribonema minus UTEX_B_3156 polypeptideContig_147 61661..63806 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16813_2exon_16813_2Tribonema minus UTEX_B_3156 exonContig_147 61661..61950 -
exon_16813_1exon_16813_1Tribonema minus UTEX_B_3156 exonContig_147 63689..63806 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16813CDS_16813Tribonema minus UTEX_B_3156 CDSContig_147 63689..63806 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16813 ID=mRNA_16813|Name=jgi.p|Trimin1|177193|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=408bp|location=Sequence derived from alignment at Contig_147:61661..63806- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CCGTGCCCCCCCGGCTCCTTTGCGCCGCAGACGGGCATGCCCTTCTGCTA
TAAGGCGCGGCCTGGCCGCTACGTTGCTGGGCATGGGGCTGTGACGGACA
CGGACTGCCCCACGGGGGCCACGCCTGGCTCTTACGCCAACGGCTCCGGC
AGCAAGGACCAGACCAAGTGCCCAAAGGGGACATTCATGCCCCAAAAACG
CGCCTCCCGCTGCTACCAGGCCCAGCCCGGGTACTACGTTGCAGGCGAGG
GGGCAACCGCGGAGGCCCCTTGTGGCCTGCTCACATATCAGCCGCAGTGC
GGCCAAGCGAGCTGCCTGCCCGTTGACAGCGGTGAGTGGCCTGCGGCAAC
TCCAAGTCACACAGCAGCACGTGCATCCAGATATGCGAGCAGACCACCTT
CCGCGTAG
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protein sequence of jgi.p|Trimin1|177193

>Trimin1|177193|e_gw1.147.34.1 ID=Trimin1|177193|e_gw1.147.34.1|Name=jgi.p|Trimin1|177193|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=136bp
PCPPGSFAPQTGMPFCYKARPGRYVAGHGAVTDTDCPTGATPGSYANGSG
SKDQTKCPKGTFMPQKRASRCYQAQPGYYVAGEGATAEAPCGLLTYQPQC
GQASCLPVDSGEWPAATPSHTAARASRYASRPPSA*
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mRNA from alignment at Contig_147:61661..63806-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16813 ID=mRNA_16813|Name=jgi.p|Trimin1|177193|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2146bp|location=Sequence derived from alignment at Contig_147:61661..63806- (Tribonema minus UTEX_B_3156 )
CCGTGCCCCCCCGGCTCCTTTGCGCCGCAGACGGGCATGCCCTTCTGCTA
TAAGGCGCGGCCTGGCCGCTACGTTGCTGGGCATGGGGCTGTGACGGACA
CGGACTGCCCCACGGGGGGTGTGGAGGGGGGCGAGAAGAAGAAGCTGTCC
GCGTACAGCAACAAGTGAGTGCTGAAGTCACGACCATTTGTACGAGAGCG
AGCACTGGGCGACTCGGAGGCCGCATAGTTGTGTGTGCGTGGAACACACT
CAGTGATCAGGAGCAGTTCAGGCAGCGCAACGCCCTTCGAATCCTGCGCA
GCAGCAGTCTGAACATTCAGGTCCAGCCCAGCCTCGCCAGTAGATATCTA
ACACCAGTGAATTTCTGTCATCCTACCCTCATCATCACCCCGGAATTACA
GTCCTACCCATACTCCCAACTTTGCAAATACTAAACGCTCACTCTACTCC
CATTGTTCACACCTGCAGGTATGGGGCGACAACATGCGAGCTGTGTGCCG
AGGGCACGGCAGCTGTGGGCGAGGGCACTATTGAGTGCGTAACAGCGCCT
ACAGGCGCCATAGCCACTGGCCTGGGCAACTTTGAGTTCGCCCTGTGCGA
CGCCGGCACGTACAGCTGCTGCGAGGGTGCTGGACAGTGCGACAAGTACG
TATGCCATAATTGTGATATCAATACCAAATTCAACTTGAGATTTTCTAGG
TTGATTCTGACCCGCATCAGCCTGGAGTGACCCGTAGCACCAGCGTCAGG
ATCACAGATGTTGTCACTGTGCGAGAACTGCAGCCAGTCATGATGCTGAC
CGCTTTAGGGTGCTCTTGCTTGTCCTGACTCATCGGACGGCATCTCAATG
ATGCGAGTACCATCATGATAGCCCGGCAGGAGTGAGGTCAACCAACGGCG
GCCGAAATTATTGGCTTCAACAGCGGAAGCAGCTGCTGTGCATGGCATCG
TTGAGTGCACCATAATATGACCTGAGTTGGCATACACCTATACTATGGAT
TACGGTGACCCGAGATGCAGGCATGGATTGCAGGGCTCTCTGGTGTAGGC
GGCTTGTGTACATTTTACCACGAGGTATACTGGTAGTGCTGAAATGTTTA
CATACAATTATAAACTTCTCAACATTATCAGACGCCATACATTTGTTGCC
AGCGGATAGGCGTTTGTGCCCATGCTCAGAACCATGATATGTGCCCATTT
CGAACAGTACAATGTACCAAGGTGCACCGAGTCTTGTGTGTACAATACCA
GTGTGCGAAGCAGTTGGTTACGAAGGCTCATGCTTTGCATTTCTTACCCC
TCCACATGGCGCCGACGCAGTAGCTCAGCATTAAGCGGATGCAGCATGCT
ATCAATATATACTTCGAAGTATACTTCTACTAGTAGATGTATTATGCAGT
GCCTTTGTAGCATCTTTTGGGTGAGTGCATGAGGCTGATGCATGTAACGC
ACAATGAACACGCGGTTTGAAAAGGATTGGCTGGCAAGTTCAATTTGGCA
GCATGCCTATGAGCACTCGCAAGCACTGCTAGAGTTCAGAGGTGGCCAGC
ATCACAATGCCAAACATGAATGCACAGATGTTGGAAAGTAATTCCATTTG
CGCTAGCCCCATAGATCTCACTCAGGATGGCACGATGTGCATGTTGACCT
CATGCTGGTGCAACAACAGGTCAGCAGCTTGTGAGCTTTCACGTTTCAGC
AACATCACGGGGGCTGTCTTTTAACTCTAAGTTGAACAAGTCTGTTGCCA
TCAAGTCTGCCACGCCTCAGACGGTGCCATCATGATCGTTATTGCACGCG
CAGATGCCCGCCCGGAACCTTTGTCAAGGAGAGCGGCGCGTCGGCCTGTA
CTCCAGCCACGCCTGGCTCTTACGCCAACGGCTCCGGCAGCAAGGACCAG
ACCAAGTGCCCAAAGGGGACATTCATGCCCCAAAAACGCGCCTCCCGCTG
CTACCAGGCCCAGCCCGGGTACTACGTTGCAGGCGAGGGGGCAACCGCGG
AGGCCCCTTGTGGCCTGCTCACATATCAGCCGCAGTGCGGCCAAGCGAGC
TGCCTGCCCGTTGACAGCGGTGAGTGGCCTGCGGCAACTCCAAGTCACAC
AGCAGCACGTGCATCCAGATATGCGAGCAGACCACCTTCCGCGTAG
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Coding sequence (CDS) from alignment at Contig_147:61661..63806-

>mRNA_16813 ID=mRNA_16813|Name=jgi.p|Trimin1|177193|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=408bp|location=Sequence derived from alignment at Contig_147:61661..63806- (Tribonema minus UTEX_B_3156 )
CCGTGCCCCCCCGGCTCCTTTGCGCCGCAGACGGGCATGCCCTTCTGCTA
TAAGGCGCGGCCTGGCCGCTACGTTGCTGGGCATGGGGCTGTGACGGACA
CGGACTGCCCCACGGGGGCCACGCCTGGCTCTTACGCCAACGGCTCCGGC
AGCAAGGACCAGACCAAGTGCCCAAAGGGGACATTCATGCCCCAAAAACG
CGCCTCCCGCTGCTACCAGGCCCAGCCCGGGTACTACGTTGCAGGCGAGG
GGGCAACCGCGGAGGCCCCTTGTGGCCTGCTCACATATCAGCCGCAGTGC
GGCCAAGCGAGCTGCCTGCCCGTTGACAGCGGTGAGTGGCCTGCGGCAAC
TCCAAGTCACACAGCAGCACGTGCATCCAGATATGCGAGCAGACCACCTT
CCGCGTAG
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