mRNA_16806 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|147752
Unique NamemRNA_16806
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|147752 vs. uniprot
Match: A0A835ZA57_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA57_9STRA)

HSP 1 Score: 320 bits (820), Expect = 9.140e-111
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 1 
Query:    1 DMMGVLFRLLRHLPQVIEYYLDQYIFPETMEHQPSKLAANGQDVGGDMLFKTKLGFSGTPSDLVPVELGRCQFEMGNTAMMLHYLTDPQARVALYRLLPADWSVRSLLETVGNSNDPVYNALIDVGALVTGMSNLEVAQYLLTNGLPNMDGVVYLDSK 474
            DMMGVLFRLLRHLPQVIEYYLDQYIFPETMEHQPSKLAANGQDVGGDMLFKTKLGFSGTPSDLVPVELGRCQFEMGNTAMMLHYLTDPQARVALYRLLPADWSVRSLLETVGNSNDPVYNALIDVGALVTGMSNLEVAQYLLTNGLPNMDGVVYLDSK
Sbjct:    1 DMMGVLFRLLRHLPQVIEYYLDQYIFPETMEHQPSKLAANGQDVGGDMLFKTKLGFSGTPSDLVPVELGRCQFEMGNTAMMLHYLTDPQARVALYRLLPADWSVRSLLETVGNSNDPVYNALIDVGALVTGMSNLEVAQYLLTNGLPNMDGVVYLDSK 158
[Close]
BLAST of jgi.p|Trimin1|147752 vs. uniprot
Match: D8LRI4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRI4_ECTSI)

HSP 1 Score: 223 bits (568), Expect = 1.600e-64
Identity = 112/156 (71.79%), Postives = 131/156 (83.97%), Query Frame = 1 
Query:    1 DMMGVLFRLLRHLPQVIEYYLDQYIFPETMEHQPSKLAANGQDVGGDMLFKTKLGFSGTPSDLVPVELGRCQFEMGNTAMMLHYLTDPQARVALYRLLPADWSVRSLLETVGNSNDPVYNALIDVGALVTGMSNLEVAQYLLTNGLPNMDGVVYLD 468
            +M+G LFRLLR LPQVI+YYLD  IFPETMEH+  KLAANGQDVGG+MLF+ KLGFSGTPSDL+P+ELGRCQFE+GNTAMM+HYLTDP   VA +RLL  +WSV  LL  V  S DP ++ALID GALVTGM+NLEVA++LLT GL  ++GVVYLD
Sbjct: 3496 EMVGTLFRLLRRLPQVIDYYLDTLIFPETMEHRGLKLAANGQDVGGNMLFEVKLGFSGTPSDLLPLELGRCQFELGNTAMMVHYLTDPV--VASHRLLGTEWSVTRLLSEVARSTDPPFHALIDGGALVTGMTNLEVARHLLTVGLDGLEGVVYLD 3649
[Close]
BLAST of jgi.p|Trimin1|147752 vs. uniprot
Match: A0A7S2RYT9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RYT9_9STRA)

HSP 1 Score: 176 bits (446), Expect = 1.820e-53
Identity = 88/158 (55.70%), Postives = 113/158 (71.52%), Query Frame = 1 
Query:    1 DMMGVLFRLLRHLPQVIEYYLDQYIFPETMEHQPSKLAANGQDVGGDMLFKTKLGFSGTPSDLVPVELGRCQFEMGNTAMMLHYLTDPQARVALYRLLPADWSVRSLLETVGNSNDPVYNALIDVGALVTGMSNLEVAQYLLTNGLPNMDGVVYLDSK 474
            + M VL++LL HLP V+E+YLD +IFPET  HQ  KL+A GQ++GG +LF  +LGFSGTPSDL+PVELGRCQ+E G+   MLH+LT P    AL  L+   W+V SLL  +       YNALID GAL+TG +N EVA +LL +GL  M+GVV+LD +
Sbjct:   27 EQMKVLYQLLSHLPHVVEHYLDSFIFPETCAHQGLKLSACGQELGGSLLFDRRLGFSGTPSDLLPVELGRCQYEKGSDGKMLHFLTSPAIMSAL--LMDMSWTVESLLMAIATGG---YNALIDTGALITGFTNYEVAAFLLDHGLDGMEGVVFLDER 179
[Close]
BLAST of jgi.p|Trimin1|147752 vs. uniprot
Match: W7TMJ4_9STRA (EF-Hand 1, calcium-binding site n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TMJ4_9STRA)

HSP 1 Score: 190 bits (482), Expect = 5.990e-53
Identity = 92/158 (58.23%), Postives = 121/158 (76.58%), Query Frame = 1 
Query:    1 DMMGVLFRLLRHLPQVIEYYLDQYIFPETMEHQPSKLAANGQDVGGDMLFKTKLGFSGTPSDLVPVELGRCQFEMGNTAMMLHYLTDPQARVALYRLLPADWSVRSLLETVGNSNDPVYNALIDVGALVTGMSNLEVAQYLLTNGLPNMDGVVYLDSK 474
            ++M  L+ LL   P V+E+YL  ++FPETMEH   KLAANGQD+GG +LF+ +LGFSGTPSDL+PVE+GRC +E G+TA MLHYLT P   +  + ++   W+V SLL  +GNSN   +NALID GAL+TG+ NL+VA+YLL +GLPNM+GVV+LD K
Sbjct: 2870 EVMESLYTLLGRQPHVVEHYLCNFVFPETMEHHVLKLAANGQDLGGALLFERRLGFSGTPSDLLPVEMGRCVYEQGDTAQMLHYLTSPS--IVAFDVMGHGWTVSSLLHYIGNSN---FNALIDTGALITGLDNLQVAEYLLQHGLPNMEGVVFLDDK 3022
[Close]
BLAST of jgi.p|Trimin1|147752 vs. uniprot
Match: A0A7S2DZF6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DZF6_9STRA)

HSP 1 Score: 174 bits (441), Expect = 5.920e-52
Identity = 84/156 (53.85%), Postives = 113/156 (72.44%), Query Frame = 1 
Query:    1 DMMGVLFRLLRHLPQVIEYYLDQYIFPETMEHQPSKLAANGQDVGGDMLFKTKLGFSGTPSDLVPVELGRCQFEMGNTAMMLHYLTDPQARVALYRLLPADWSVRSLLETVGNSNDPVYNALIDVGALVTGMSNLEVAQYLLTNGLPNMDGVVYLD 468
            + MG+L+ L+  +P +++YYLD++IFPET  HQ  KL+A GQ++GG+MLF  ++GFSGTPSDL+PVELGRC +E G+   M+H LT P+   A    L  DWS+  +L  V N     Y+ALID GAL+TG++NL+VA +LL NGL  MDGVVYLD
Sbjct:   84 EQMGLLYDLMHKVPHMVQYYLDRFIFPETCAHQGLKLSACGQELGGNMLFPRRIGFSGTPSDLLPVELGRCHYEKGSDGKMIHVLTSPEVMSAT--ALGDDWSIEGILRMVANGG---YHALIDTGALITGLTNLQVATFLLNNGLEGMDGVVYLD 234
[Close]
BLAST of jgi.p|Trimin1|147752 vs. uniprot
Match: A0A7R9WMC4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WMC4_9STRA)

HSP 1 Score: 176 bits (445), Expect = 6.690e-52
Identity = 87/157 (55.41%), Postives = 118/157 (75.16%), Query Frame = 1 
Query:    7 MGVLFRLLRHLPQVIEYYLDQYIFPETMEHQPSKLAANGQDVGGDMLFKTKLGFSGTPSDLVPVELGRCQFEMGNTAMMLHYLTDPQARVALYRLLPADWSVRSLLETVGNSNDPVYNALIDVGALVTGMSNLEVAQYLLTNGLPN-MDGVVYLDSK 474
            M V F+LL  LP VI+YYLDQ++FP TMEH   K++A+GQD+GG+MLF  ++GFSGTPSDL+P ELG+CQ++ G    +LH+LT+    +   RL+ + WSV+ LL+ +  + DP Y+AL+D GAL+TGMSN EVA+YLLTNGL    DGV +LDS+
Sbjct:   94 MSVTFKLLHDLPHVIQYYLDQFVFPLTMEHHHEKISASGQDLGGEMLFSKRVGFSGTPSDLLPEELGQCQYDEGVDGQILHFLTNEA--IVSSRLMESQWSVKKLLDDILKA-DPPYHALLDCGALITGMSNYEVAKYLLTNGLTTEFDGVAFLDSQ 247
[Close]
BLAST of jgi.p|Trimin1|147752 vs. uniprot
Match: A0A7S1DEL9_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DEL9_HEMAN)

HSP 1 Score: 173 bits (439), Expect = 2.990e-51
Identity = 88/154 (57.14%), Postives = 114/154 (74.03%), Query Frame = 1 
Query:   13 VLFRLLRHLPQVIEYYLDQYIFPETMEHQPSKLAANGQDVGGDMLFKTKLGFSGTPSDLVPVELGRCQFEMGNTAMMLHYLTDPQARVALYRLLPADWSVRSLLETVGNSNDPVYNALIDVGALVTGMSNLEVAQYLLTNGLPNMDGVVYLDSK 474
            VLF LLR LPQV+E+YL  ++FP TM  QP KL+A+GQ+VGGD++F  +LGFSGTPS+L+PVELG C FE G+   +LH LTDP   VA   L+P  WSV S+L+ +  + DP ++ALID GAL+TG +NL VA+YLL  GL   D VV+LDS+
Sbjct:   32 VLFLLLRRLPQVVEWYLCNHVFPLTMRFQPQKLSASGQEVGGDLVFGRRLGFSGTPSNLLPVELGTCCFEKGDDGKILHTLTDPS--VAFIDLIPDGWSVESILDRIAAA-DPPFHALIDTGALITGFNNLAVARYLLEKGLKGFDAVVFLDSQ 182
[Close]
BLAST of jgi.p|Trimin1|147752 vs. uniprot
Match: A0A7S2EQG5_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EQG5_TRICV)

HSP 1 Score: 166 bits (421), Expect = 5.210e-50
Identity = 82/146 (56.16%), Postives = 109/146 (74.66%), Query Frame = 1 
Query:   40 PQVIEYYLDQYIFPETMEHQPSKLAANGQDVGGDMLFKTKLGFSGTPSDLVPVELGRCQFEMGNTAMMLHYLTDPQARVALYRLLPADWSVRSLLETVGNSNDPVYNALIDVGALVTGMSNLEVAQYLLTNGLP-NMDGVVYLDSK 474
            PQ IEYYLD ++FP TMEH   K++A+GQD+GG+MLF  ++GFSGTPSDL+P ELG+CQ++ G    +LHYLT     +   R+L  DWS  ++L+ +  +NDP ++ LID GAL+TGMSN EVA+YLLTNGL  + DGVV+LD K
Sbjct:    1 PQCIEYYLDSFVFPLTMEHHHDKVSASGQDLGGNMLFGRRVGFSGTPSDLLPEELGQCQYDDGVDGQILHYLTTES--IMSSRMLGTDWSATNILDQIA-TNDPPFHVLIDTGALITGMSNYEVAKYLLTNGLSKSFDGVVFLDHK 143
[Close]
BLAST of jgi.p|Trimin1|147752 vs. uniprot
Match: A0A7S1J6C3_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1J6C3_9EUGL)

HSP 1 Score: 178 bits (451), Expect = 1.540e-49
Identity = 86/158 (54.43%), Postives = 118/158 (74.68%), Query Frame = 1 
Query:    1 DMMGVLFRLLRHLPQVIEYYLDQYIFPETMEHQPSKLAANGQDVGGDMLFKTKLGFSGTPSDLVPVELGRCQFEMGNTAMMLHYLTDPQARVALYRLLPADWSVRSLLETVGNSNDPVYNALIDVGALVTGMSNLEVAQYLLTNGLPNMDGVVYLDSK 474
            D M +L+R+LR LP +I YYL +++FP+TM H   +L+A+GQD+GGD++F  +LGFSGTP+D +P E G C FE G+   +++ LT P   V  Y++ P DWS  S+L+TV N+N P Y+ALID GAL+TGMSN +VAQYLL NGLP M GVV+LD++
Sbjct:  297 DQMQLLYRMLRLLPHLIVYYLHEHVFPKTMTHSGMQLSASGQDLGGDIMFPLRLGFSGTPNDNLPEEFGGCHFEKGDDGKVMYLLTSPS--VVTYQVSPDDWSPTSILDTVANAN-PQYHALIDTGALITGMSNYDVAQYLLLNGLPGMGGVVFLDAE 451
[Close]
BLAST of jgi.p|Trimin1|147752 vs. uniprot
Match: A0A7S0HHN2_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HHN2_9CRYP)

HSP 1 Score: 177 bits (448), Expect = 7.930e-49
Identity = 83/151 (54.97%), Postives = 116/151 (76.82%), Query Frame = 1 
Query:   16 LFRLLRHLPQVIEYYLDQYIFPETMEHQPSKLAANGQDVGGDMLFKTKLGFSGTPSDLVPVELGRCQFEMGNTAMMLHYLTDPQARVALYRLLPADWSVRSLLETVGNSNDPVYNALIDVGALVTGMSNLEVAQYLLTNGLPNMDGVVYLD 468
            LF+LL  LPQ+I  YL   IFP+ ++HQ  KL+A+GQ++GGDMLFK +LGFSGTPS+L+P+ELG+C+++ G    + H LTDP  +V  ++++ + WSVRSLL+ +  S+DP Y+ALID GAL+TGM+NLEVA YL+  GL   +GVV+LD
Sbjct:  357 LFKLLHRLPQLIHSYLHNTIFPDVLKHQAMKLSASGQELGGDMLFKRRLGFSGTPSELLPLELGKCRYDRGTDGKLQHVLTDP--KVVSFKMIESPWSVRSLLDLIAGSSDPQYHALIDTGALITGMTNLEVASYLIEAGLQWAEGVVFLD 505
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|147752 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZA57_9STRA9.140e-111100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
D8LRI4_ECTSI1.600e-6471.79Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2RYT9_9STRA1.820e-5355.70Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
W7TMJ4_9STRA5.990e-5358.23EF-Hand 1, calcium-binding site n=2 Tax=Monodopsid... [more]
A0A7S2DZF6_9STRA5.920e-5253.85Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7R9WMC4_9STRA6.690e-5255.41Hypothetical protein (Fragment) n=1 Tax=Craspedost... [more]
A0A7S1DEL9_HEMAN2.990e-5157.14Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
A0A7S2EQG5_TRICV5.210e-5056.16Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S1J6C3_9EUGL1.540e-4954.43Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A7S0HHN2_9CRYP7.930e-4954.97Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_144contigContig_144:273550..277253 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|147752|gw1.144.65.1
BRITEko00000,ko00001
KEGG Pathwayko01521,ko01522,ko04010,ko04012,ko04013,ko04014,ko04062,ko04068,ko04072,ko04150,ko04151,ko04320,ko04360,ko04510,ko04540,ko04630,ko04650,ko04660,ko04662,ko04664,ko04714,ko04722,ko04810,ko04910,ko04912,ko04915,ko04917,ko04926,ko05034,ko05160,ko05165,ko05200,ko05205,ko05206,ko05210,ko05211,ko05213,ko05214,ko05215,ko05220,ko05221,ko05223,ko05224,ko05225,ko05226,ko05231,map01521,map01522,map04010,map04012,map04013,map04014,map04062,map04068,map04072,map04150,map04151,map04320,map04360,map04510,map04540,map04630,map04650,map04660,map04662,map04664,map04714,map04722,map04810,map04910,map04912,map04915,map04917,map04926,map05034,map05160,map05165,map05200,map05205,map05206,map05210,map05211,map05213,map05214,map05215,map05220,map05221,map05223,map05224,map05225,map05226,map05231
KEGG koko:K03099,ko:K05746
Preferred nameENAH
Descriptionpositive regulation of caveolin-mediated endocytosis
COG categoryU
Max annot lvl2759|Eukaryota
EggNOG OGsKOG1029@1|root,KOG1029@2759|Eukaryota
Evalue2.63e-65
Seed ortholog2880.D8LRI4
Hectar predicted targeting categoryother localisation
TranscriptId148074
TrackFilteredModels1
ProteinId147752
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|147752gene_16806Tribonema minus UTEX_B_3156 geneContig_144 273550..277253 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|147752Trimin1|147752|gw1.144.65.1Tribonema minus UTEX_B_3156 polypeptideContig_144 273550..277253 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16806_5exon_16806_5Tribonema minus UTEX_B_3156 exonContig_144 273550..273615 -
exon_16806_4exon_16806_4Tribonema minus UTEX_B_3156 exonContig_144 274373..274507 -
exon_16806_3exon_16806_3Tribonema minus UTEX_B_3156 exonContig_144 274747..274748 -
exon_16806_2exon_16806_2Tribonema minus UTEX_B_3156 exonContig_144 275492..275717 -
exon_16806_1exon_16806_1Tribonema minus UTEX_B_3156 exonContig_144 277209..277253 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16806CDS_16806Tribonema minus UTEX_B_3156 CDSContig_144 277209..277253 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16806 ID=mRNA_16806|Name=jgi.p|Trimin1|147752|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=474bp|location=Sequence derived from alignment at Contig_144:273550..277253- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GACATGATGGGGGTGCTCTTCAGGCTGCTGCGCCACCTGCCGCAGGTGAT
CGAATACTACCTGGACCAGTACATCTTTCCAGAGACCATGGAGCACCAAC
CCAGCAAACTCGCAGCCAATGGCCAAGACGTGGGCGGTGACATGCTGTTC
AAGACAAAGCTGGGTTTCAGCGGCACACCCAGTGATCTCGTGCCTGTGGA
GCTGGGGCGCTGCCAGTTTGAGATGGGCAACACCGCCATGATGCTGCACT
ACCTCACGGATCCCCAGGCAAGAGTGGCGCTGTATCGGCTGCTGCCTGCC
GACTGGTCTGTGCGATCACTGCTGGAAACGGTTGGCAACTCCAACGACCC
TGTCTACAATGCGCTGATTGACGTCGGAGCCCTGGTCACCGGCATGAGCA
ACCTCGAGGTGGCGCAGTATCTGCTGACTAACGGCTTGCCCAACATGGAT
GGGGTCGTCTACCTGGACAGCAAG
back to top

protein sequence of jgi.p|Trimin1|147752

>Trimin1|147752|gw1.144.65.1 ID=Trimin1|147752|gw1.144.65.1|Name=jgi.p|Trimin1|147752|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=158bp
DMMGVLFRLLRHLPQVIEYYLDQYIFPETMEHQPSKLAANGQDVGGDMLF
KTKLGFSGTPSDLVPVELGRCQFEMGNTAMMLHYLTDPQARVALYRLLPA
DWSVRSLLETVGNSNDPVYNALIDVGALVTGMSNLEVAQYLLTNGLPNMD
GVVYLDSK
back to top

mRNA from alignment at Contig_144:273550..277253-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16806 ID=mRNA_16806|Name=jgi.p|Trimin1|147752|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3704bp|location=Sequence derived from alignment at Contig_144:273550..277253- (Tribonema minus UTEX_B_3156 )
GACATGATGGGGGTGCTCTTCAGGCTGCTGCGCCACCTGCCGCAGGTGCG
TGTCATAGTTGAACTTGAAGTTTGTGTTTGAATTGAAAATGCCAAAGTAC
TTGTCTTGGGTGCTCTTCAGGCTGCTGCGCCACCTGCCACAGGTGCGTGC
GCACGTGGCAGTTGAAGTTGAAGTTTATGTGTGAATTAGAATTGATCTTC
ACACATGATGGGGGTGCTCTTCAGGCTGCTGCGCCACCTGCCGCAGGTGC
GTGTCATAGTTGAACTTGAAGTTTGTGTTTGAATTGAAAATGCCAAAGTA
CGTGTCTTTGGGTGCTCTTCAGGCTGCTGCGCCACCTGCCACAGGTGCGT
GCGCACGTGGCGGTTGAAGTTGAAGTTTATGTGTGAATTAGAATCGATCT
TCACACATGATGGGGGTGCTCTTCAGGCTGCTGCGCCACCTGCCGCAGGT
GCGTGTCATAGTTGGACTTGGAGTTTGTGTTTGAATTGAAAATGCCAAAG
TACGTGTCTCTGGGTGCTCTTCAGGCTGCTGCGCCACCTGCCGCAGGTGC
GTGCGCACGTGGCAGTAGAAGAAGTTTATGTGTGAATTAGAATTGATCTT
CACACGTGATGGGGGTGCTCTTCAGGCTGCTGCGCCACCTGCCGCAGGTG
CGTGTCACATTTGAACTTGAAGTTTGTGTTTGAATTGAAAATGCCAAAGT
ACGTGTCTCTGGGTGCTCTTCAGGCTGCACCTGCCGCAGGTGCGTGCGCA
CGTGGCAGTTGAAGTTGAAGTTTATGTGTGAATTAGAATTGATCTTCACA
CATGATGGGGGTGCTCTTCAGGCTGCTGCGCCACCTGCCGCAGGTGCGTG
TGCACGTGGTCGTGTAATAAAGTTGACGTTTGTGACGTAGCTGGGGCGTC
GCAGGCGAACAACAGAGCAGCAGGAAGGCCGAAACTTGCTGATTGGGTGG
TGGTGGGACCACAACAGCTGTGGTGACTCTCCGCCTAGGACTTGAACTTG
CCAGACTGCAACTAGAGCTTGGTCCCCTAACTACGTCATTTGTGCTAAAT
TGATGTGTTAATTCATAGAGTGTCATTCAGGCTGCTGCACGACGTTGAAC
CTGAACTTGAAGTGCATGCATGACTTGAACGTTATCCCCATGCACGGGAG
TGAGGGTGCTCTTTGAGGCTGCTGCGCCACCTGTGCACCTTTTCAAACAC
CATATTTGACGTCTGCTGCGTGCCAGACTGTGATGACTGCTAACATATCA
CCTCAACTGAGCCTCGATGCCGACAAGTGATTGCGTACTACCTGGACCAG
TACATCTACCCAGGATCAATATTCAAACCCGATGTGAAACTGACGCCAAT
GTGTTGCTCAAACCGAGCCGTGCTGCATTGGCATGCGCTGCGGCAGGTAA
TTGAGTACTACCTGGACCAGTACATCTTCCCGGAGACCACTTCTTTGGCA
CTCAATGTGTAACTCATGACATTGCGTAACTGATGCCAATGTGTTGGTGA
GATTTTGCCTCAACGCATACCCTGTTCGCCCAACAGGTGATCGAATACTA
CCTGGACCAGTACATCTTTCCAGAGACCATGGAGCACCAACCCAGCAAAC
TCGCAGCCAATGGCCAAGACGTGGGCGGTGACATGCTGTTCAAGACAAAG
CTGGGTTTCAGCGGCACACCCAGTGATCTCGTGCCTGTGGAGCTGGGGCG
CTGCCAGTTTGAGATGGGCAACACCGCCATGATGCTGCACTACCTCACGG
ATCCCCAGGCAAGTTACAGTGATTGGCTAAACCTTGACCATGGGTTTTGG
CTAATCCGGACCCTCATTCTGAACACAAAGGCCCAAGTTGACATGGTGAC
TGGCTAATGCTGGCCCTAATTTGAACACTGCTATAAGGGTCCAGTTTGAG
ATGGGCAACACCACCATGATGCTGCATTACCTCACGGATCCCCAGGTCAG
TGACAGTGATTAATGAATCCTGACCCTTAATCCTGATTCTGATGTAAACA
TAGGGTCCAGTTTGAGATGGGGAACACCGCCATGATGCTGTACTGCATCA
CGTGGGTCTCGGCAACTGGCTTGCCCTAACTCATAATCCTATGCAAGCTG
AAGCCCAGGGTCGGTTGAAAGATGAGCTCCTGCTGAACTCGTCAGGAGCC
AGCTTAAAGTATCTGACACACGCTGCATCACCTCCATCAACCAGGCATGG
ACTGGTCACTTGCGCAGTTCTTGTATGCGGCGCACTAAGTCCCAGAAAGC
CCGGCAGCACGCATGTTGAAATGGTATGGCGGCAGCATGGGATACCTGAT
AGGTGCCACAAACTTTGACAGATATGTACTACAATCTTTTGATTCGTTTT
TCATCAGGTGCAGCTCAGCAGCAAGTAACACACATGTTGAAGTTGCAAGT
GTGCTGTTGAAGTTCCTACTGTGCTCATGTCCAGCCCACATCTTACACTG
TTTATCGTCGTCTTGATACATCTTGTGTCTCCTACACATGCTGCTGCTGC
GGAAGGAGTGAGCCAATGACTGTGCATGCTGGCTCATTGTTCCCTGGTCT
AAGTAAATATCCTCATGCTTGCTGCTCTTGCTGCTGCTGCTGCTGCTGCC
CCCTGTGCTGCTGCTGCTGCTGTTGCTGCCGCCGCCGCCGGTGTTGACTT
CCGCCGCCACCGCGGTCGCCACGGCTGCCGCCGCCGTCGCCACCGCTGCT
GCCGCCGCTGCTGCTGGCACTGCTGCTGTAACTCTGATTGCTGCAGGTGG
CGCTGTATCGGCTGCTGCCTGCCGACTGGTCTGTGCGATCACTGCTGGAA
ACGGTTGGCAACTCCAACGACCCTGTCTACAATGCGCTGATTGACGTCGG
AGCCCTGGTCACCGGCATGAGCAACCTCGAGGTAATGTTAATGTAATGTA
ACTGGAAGGTAACTGCAATGTTAATGAAAACGAATCAAAAGATCGTAGAG
CTTTAGGTGACAAGGGATGGTTAGCCGCAAGTGCATGTGACGATCGTCGC
TGGCTTGAGCAACCCCGGAGTAATACTGTAATGTGACTGTGATCGGCGTC
AGGGGATCACCACCTTTGTCACTGCCATGAGCAATCTCCAGGTACTTGCA
TCGCAGCTGCAATATTCAGCAGAAGCAGTCTTTGTAACGCTTTGGTGCAT
CTCTCCAACACGATAATGTCACGCAATAGAGCCAAGGGCCAACACACACA
TGCAATAGGATCAAGAACCTCAAGCCGGGTCTGATGGCTCATGTATCGTC
ACTGACATCAGCAAATGAAGATCACTCTAATCTTTCGAGATGAACATACT
TCATTGAAGCTGCTAGGTCGGTATACTGATAACAGTGTGTCGCAAGAAAA
ATGACCGCTTTCTCAGCAATAACACTGTCGCGCGACAGACCTGTAATCCT
CATCAGCAGCACTCTATGAAGTGCCTAGTTAGGCGCAGTGCTTCACTTTA
ACCTTGCGCGTTAGATGAGTGTATCAATGCTGCAGGTGATGTTGCCACTT
TCAAAACCACGATTTGAACTTCAAATGCTTCCATCTTGCTGTCCCGTGTG
TGTGTGACGTCATGGAGACGTTATTGAACCGCAACTGCCCCTGTGTTGCT
GTCCCGTGTGTGTGTATGTGTTACGCCATTGAGAGCAGGTGGCGCAGTAT
CTGCTGACTAACGGCTTGCCCAACATGGATGGGGTCGTCTACCTGGACAG
CAAG
back to top

Coding sequence (CDS) from alignment at Contig_144:273550..277253-

>mRNA_16806 ID=mRNA_16806|Name=jgi.p|Trimin1|147752|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=474bp|location=Sequence derived from alignment at Contig_144:273550..277253- (Tribonema minus UTEX_B_3156 )
GACATGATGGGGGTGCTCTTCAGGCTGCTGCGCCACCTGCCGCAGGTGAT
CGAATACTACCTGGACCAGTACATCTTTCCAGAGACCATGGAGCACCAAC
CCAGCAAACTCGCAGCCAATGGCCAAGACGTGGGCGGTGACATGCTGTTC
AAGACAAAGCTGGGTTTCAGCGGCACACCCAGTGATCTCGTGCCTGTGGA
GCTGGGGCGCTGCCAGTTTGAGATGGGCAACACCGCCATGATGCTGCACT
ACCTCACGGATCCCCAGGCAAGAGTGGCGCTGTATCGGCTGCTGCCTGCC
GACTGGTCTGTGCGATCACTGCTGGAAACGGTTGGCAACTCCAACGACCC
TGTCTACAATGCGCTGATTGACGTCGGAGCCCTGGTCACCGGCATGAGCA
ACCTCGAGGTGGCGCAGTATCTGCTGACTAACGGCTTGCCCAACATGGAT
GGGGTCGTCTACCTGGACAGCAAG
back to top