mRNA_1678 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|157973
Unique NamemRNA_1678
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|157973 vs. uniprot
Match: A0A835YTW7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTW7_9STRA)

HSP 1 Score: 931 bits (2406), Expect = 0.000e+0
Identity = 472/472 (100.00%), Postives = 472/472 (100.00%), Query Frame = 1
Query:    1 MFLEDTNTLEHCYSRKLIPWESKVRLSALRADIELHISLAQHRGTEGAASAAAVLPHAAVDVINLVVHPWERISGVVQRASRAFFRAGVLRAELHTLTKGSADVGRTTSLESTVHDFSSKLHHGAQLSFQRYVSHDSGAVYVKTLTGKVIALAAVVADTTVDKLKQMIHDTEGIPPDQQRLIWRGKALEDSRTVSDYGMKFCPELREPSVQILLRLRGGGSVTSGRFADVADANAISRMAFSHNAPAWRVACPGLNVEGVCGTTGCRARGEMVIHGVGMGAFTLGDACACPLCRRPFAPVTCAFLACAWMFEGVKAGGGVALGGVWRAAGDAYERFNTGADGESGGSMVEWERLVLVAKCRGRVRPAAALASGSSAQVDDCAVCLEPLCSWNVSLQAAVTPCGHVYHEACLKAWRRSSSTSRGTCASCCADLKLSSRPVRAAAALCACEHSWAEAGSAAPPSLAAALSQLST 1416
            MFLEDTNTLEHCYSRKLIPWESKVRLSALRADIELHISLAQHRGTEGAASAAAVLPHAAVDVINLVVHPWERISGVVQRASRAFFRAGVLRAELHTLTKGSADVGRTTSLESTVHDFSSKLHHGAQLSFQRYVSHDSGAVYVKTLTGKVIALAAVVADTTVDKLKQMIHDTEGIPPDQQRLIWRGKALEDSRTVSDYGMKFCPELREPSVQILLRLRGGGSVTSGRFADVADANAISRMAFSHNAPAWRVACPGLNVEGVCGTTGCRARGEMVIHGVGMGAFTLGDACACPLCRRPFAPVTCAFLACAWMFEGVKAGGGVALGGVWRAAGDAYERFNTGADGESGGSMVEWERLVLVAKCRGRVRPAAALASGSSAQVDDCAVCLEPLCSWNVSLQAAVTPCGHVYHEACLKAWRRSSSTSRGTCASCCADLKLSSRPVRAAAALCACEHSWAEAGSAAPPSLAAALSQLST
Sbjct:    1 MFLEDTNTLEHCYSRKLIPWESKVRLSALRADIELHISLAQHRGTEGAASAAAVLPHAAVDVINLVVHPWERISGVVQRASRAFFRAGVLRAELHTLTKGSADVGRTTSLESTVHDFSSKLHHGAQLSFQRYVSHDSGAVYVKTLTGKVIALAAVVADTTVDKLKQMIHDTEGIPPDQQRLIWRGKALEDSRTVSDYGMKFCPELREPSVQILLRLRGGGSVTSGRFADVADANAISRMAFSHNAPAWRVACPGLNVEGVCGTTGCRARGEMVIHGVGMGAFTLGDACACPLCRRPFAPVTCAFLACAWMFEGVKAGGGVALGGVWRAAGDAYERFNTGADGESGGSMVEWERLVLVAKCRGRVRPAAALASGSSAQVDDCAVCLEPLCSWNVSLQAAVTPCGHVYHEACLKAWRRSSSTSRGTCASCCADLKLSSRPVRAAAALCACEHSWAEAGSAAPPSLAAALSQLST 472          
BLAST of jgi.p|Trimin1|157973 vs. uniprot
Match: A0A835Z319_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z319_9STRA)

HSP 1 Score: 745 bits (1923), Expect = 2.240e-268
Identity = 383/448 (85.49%), Postives = 398/448 (88.84%), Query Frame = 1
Query:    4 FLEDTNTLEHCYSRKLIPWESKVRL--SALRADIELHISLAQHRGTEGAASAAAVLPHAAVDVINLVVHPWERISGVVQRASRAFFRAGVLRAELHTLTKGSADVGRTTSLESTVHDFSSKLHHGAQLSFQRYVSHDSGAVYVKTLTGKVIALAAVVADTTVDKLKQMIHDTEGIPPDQQRLIWRGKALEDSRTVSDYGMKFCPELREPSVQILLRLRGGGSVTSGRFADVADANAISRMAFSHNAPAWRVACPGLNVEGVCGTTGCRARGEMVIHGVGMGAFTLGDACACPLCRRPFAPVTCAFLACAWMFEGVKAGGGVALGGVWRAAGDAYERFNTGADGESGGSMVEWERLVLVAKCRGRVR---------------PAAALASGSSAQVDDCAVCLEPLCSWNVSLQAAVTPCGHVYHEACLKAWRRSSSTSRGTCASCCADL 1296
            FLEDT+TLE CYS K IPWESKVRL  SA+RADIELHISLAQH GTEGAASAAAVLPHAAVD I LVVHPWERISGVVQRASRAFF AGV +AELHTLTKGSADVGRTTSL+S V+DFSSKLHHGAQLSF+RYVSHDSGAVYVKTLTGK +ALAAVVADTTVDKLKQM  D + IPPDQQRL WRGK LEDSRTVSDYGMKFCP+LREP++Q+ LRLRGGG VT GRFADVAD NAIS MAFSHNAPAWRVACPGLNVEGVCGTTGCRARG+MVI GVGMGAFTLGDACACPLCRRPFAPVTCAF ACAWMFEGVKAGGG ALGGVWR AGDAYERFNTGADGESGGSMVEWERLVLVAK RGR R               PAAALASGS AQVDDCAVCLEPL SW+VSLQAAVTPCGHVYHEACLKAWRRSSS S GTC SC A+L
Sbjct:   25 FLEDTSTLERCYSEKRIPWESKVRLRLSAVRADIELHISLAQHGGTEGAASAAAVLPHAAVDAITLVVHPWERISGVVQRASRAFFPAGVPQAELHTLTKGSADVGRTTSLDSAVYDFSSKLHHGAQLSFERYVSHDSGAVYVKTLTGKTVALAAVVADTTVDKLKQMFQDAQSIPPDQQRLRWRGKMLEDSRTVSDYGMKFCPQLREPTLQLELRLRGGGCVTGGRFADVADLNAISHMAFSHNAPAWRVACPGLNVEGVCGTTGCRARGKMVIRGVGMGAFTLGDACACPLCRRPFAPVTCAFHACAWMFEGVKAGGGAALGGVWREAGDAYERFNTGADGESGGSMVEWERLVLVAKYRGRKRIPAADAAAAGGVAGEPAAALASGSGAQVDDCAVCLEPLHSWHVSLQAAVTPCGHVYHEACLKAWRRSSSASNGTCPSCRANL 472          
BLAST of jgi.p|Trimin1|157973 vs. uniprot
Match: A0A835ZBV8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBV8_9STRA)

HSP 1 Score: 402 bits (1033), Expect = 3.550e-136
Identity = 209/282 (74.11%), Postives = 220/282 (78.01%), Query Frame = 1
Query:  499 MIHDTEGIPPDQQRLIWRGKALEDSRTVSDYGMKFCPELREPSVQILLRLRGGGSVTSGRFADVADANAISRMAFSHNAPAWRVACPGLNVEGVCGTTGCRARGEMVIHGVGMGAFTLGDACACPLCRRPFAPVTCAFLACAWMFEGVKAGGGVALGGVWRAAGDAYERFNTGADGESGGSMVEWERLVLVAKCRGRVR--------------PAAALASGSSAQVDDCAVCLEPLCS--WNVSLQAAVTPCGHVYHEACLKAWRRSSSTSRGTCASCCADL 1296
            MI D EGIP DQQRL W G ALE  RTVSDY MKFCPEL EP++Q++L LRGGG VT GRFADVADA++ISRMAF  +AP WRVACPGLN EGVC TT CRARGEMVIH VGMGAFTLGDACACPLCRRPF PVTCAF  C WMFEGVKAGGG ALG VWR AGDAYERFNTGA+GESGGSMVEWERLVLVAK RG VR                AA A GS AQVDDCAVCLEPL S  W    + A TPCGHVYHEACLKAWRRSSS +  TC +C ADL
Sbjct:    1 MIQDAEGIPLDQQRLCWHGTALEGCRTVSDYNMKFCPELCEPTLQLVLMLRGGGCVTGGRFADVADASSISRMAFDDDAPKWRVACPGLNAEGVCSTTWCRARGEMVIHEVGMGAFTLGDACACPLCRRPFTPVTCAFHDCVWMFEGVKAGGGAALGSVWREAGDAYERFNTGAEGESGGSMVEWERLVLVAKYRGHVRVPDAGTAAARSVAGEPAAPAGGSGAQVDDCAVCLEPLHSRIW----EPAETPCGHVYHEACLKAWRRSSSAASATCPTCRADL 278          
BLAST of jgi.p|Trimin1|157973 vs. uniprot
Match: A0A836CBY2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBY2_9STRA)

HSP 1 Score: 313 bits (803), Expect = 4.030e-101
Identity = 167/295 (56.61%), Postives = 199/295 (67.46%), Query Frame = 1
Query:  448 IALAAVVADTTVDKLKQMIHDTEGIPPDQQRLIWRGKALEDSRTVSDYGMKFCPELRE-PSVQILLRLRGGGSVTSGRFADVADANAISRMAFSHNAPAWRVACPGLNVEGVCGTTGCRARGEMVIHGVGMGAFTLGDACACPLCRRPFAPVTCAFLACAWMFEGVKAGGGVALGGVWRAAGDAYERFNTGADGESGGSMVEWERLVLVAKCRGRVRPAAA-----------LASGSSAQVDDCAVCLEPLCSWNVSLQAAVTPCGHVYHEACLKAWRRSSSTSRGTCASCCADL 1296
            + L AV A T V +LKQ+I D EGIPP+QQRLIW GK LED R++S+Y +   P++ + P++ ++LR+RGGG      FADVADAN ISR+AFS   P WR+AC GLN+EG+C    C A G+MVIH +GMGAFTLG ACACPLC  P  P+TCAF  C WMFEGVKA    AL   WR AGD YERFNTG +G   G+MVEWERLVL+AK R  +  AAA           L S S  Q+DDCAVCLEPL +   S     TPCGH+YH+ACL AW+R SS   G C  C ADL
Sbjct:    2 VLLGAVTARTLVCELKQIITDLEGIPPEQQRLIWCGKQLEDRRSLSEYHID--PDINDLPALHLVLRMRGGGPT----FADVADANGISRIAFSDTGPKWRIACEGLNIEGLCTNAECAAHGKMVIHKIGMGAFTLGGACACPLCDAPIVPLTCAFHRCVWMFEGVKADSCAALSTAWREAGDTYERFNTGTEGSGSGAMVEWERLVLIAKGRDSIHAAAAYTAVVCSKSGELTSSSGTQLDDCAVCLEPLRTLFASF--VKTPCGHLYHKACLTAWQRCSSAGSGRCPMCRADL 288          
BLAST of jgi.p|Trimin1|157973 vs. uniprot
Match: A0A835YSA3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSA3_9STRA)

HSP 1 Score: 313 bits (801), Expect = 5.970e-101
Identity = 161/280 (57.50%), Postives = 195/280 (69.64%), Query Frame = 1
Query:  469 ADTTVDKLKQMIHDTEGIPPDQQRLIWRGKALEDSRTVSDYGMKFCPE-LREPSVQILLRLRGGGSVTSGRFADVADANAISRMAFSHNAPAWRVACPGLNVEGVCGTTGCRARGEMVIHGVGMGAFTLGDACACPLCRRPFAPVTCAFLACAWMFEGVKAGGGVALGGVWRAAGDAYERFNTGADGESGGSMVEWERLVLVAKCRGRVRPAAAL---ASGSSAQVDDCAVCLEPLCSWNVSLQAAVTPCGHVYHEACLKAWRRSSSTSRGTCASCCADL 1296
            A T V ++KQ I  TEG PP+QQRLIW GK L+DSR++  + M   P+ +  P++Q++ RLRGGGS++ G FADVADAN ISR+AFS  AP WR+AC GLN+EG+C    C A G+MVIH +GMGAF LG ACACPLC  P  P+TCAF  C WMFEGVKA GG +L   WR AGD+YERFNTG +G S G+MVEWER +L+AK R      AA    AS +  Q+DDCAVCLEPL +         TPCGH+YH+ACL AW+R SS   G C  C ADL
Sbjct:    2 ARTLVHEVKQTIQRTEGFPPEQQRLIWSGKELKDSRSLRQHFMFPGPDNIHPPTLQLIPRLRGGGSLSGGMFADVADANGISRIAFSETAPEWRIACEGLNIEGLCSNAECAAHGQMVIHKIGMGAFALGGACACPLCVAPIVPLTCAFHRCVWMFEGVKADGGASLSTAWREAGDSYERFNTGTEGTSSGAMVEWERFMLIAKGRKFTCARAADTEDASSNGTQLDDCAVCLEPLRTRRAPF--VKTPCGHLYHKACLTAWQRCSSAGSGRCPMCRADL 279          
BLAST of jgi.p|Trimin1|157973 vs. uniprot
Match: A0A835ZBQ4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBQ4_9STRA)

HSP 1 Score: 229 bits (584), Expect = 5.430e-67
Identity = 135/300 (45.00%), Postives = 178/300 (59.33%), Query Frame = 1
Query:  418 VYVKTLTGKVIALAAVVADTTVDKLKQMIHDTEGIPPDQQRLIWRGKALEDSRTVSDYGMKFCPELREPSVQILLRLRGGGSVTSG-RFADVADANAISRMAFSHNAPAWRVACPGLNVEGVCGTTGCRARGEMVIHGVGMGAFTLGDACACPLCRRPFAPVTCAFLACAWMFEGVKAGGGVALGGVWRAAGD-AYERFNTGADGESGGSMVEWERLVLVAKCRGRVRP----AAALASGSSA-----QVDDCAVCLEPLCSWNVSLQAAVTPCGHVYHEACLKAWRRSSSTSRGTCASC 1284
            ++VKTLTG    L  V++  T+D LK+MI D EGI PDQQR+I+ G+ LED R+V+DY ++     +E ++ ++LRLRGGG   SG +FADV +  A+ R + S +AP WR    G+N+EG C    C AR  +VI  VGM AF LG  C CP+C     PVTC F ACAW ++G K GG + + G WR AGD  Y+RF          +M  W RLVLVAK   +V+P     AA +SG+       Q D+CAVCL    S + S +A  TPCG+ YH  CL +WR  S  S   C +C
Sbjct:  109 LFVKTLTGACFELDDVLSGDTIDALKEMIQDLEGILPDQQRIIFAGRQLEDGRSVADYSIQ-----KEHTLHLVLRLRGGGCGPSGLQFADVTNDGAMERRSVSDDAPVWRTVRRGINMEGYCRNLRCEARVTLVIAPVGMAAFPLGSLCPCPVCYSAITPVTCGFYACAWTYDGAKEGGEL-VRGAWRTAGDDKYDRFR------ESDNMTTWSRLVLVAKPAVKVKPKPRATAAESSGADKAAGRLQPDECAVCLRGFGSGDGSSKATSTPCGYRYHALCLASWRECSHASCSKCPTC 396          
BLAST of jgi.p|Trimin1|157973 vs. uniprot
Match: A0A835ZEG5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEG5_9STRA)

HSP 1 Score: 226 bits (577), Expect = 1.930e-65
Identity = 139/303 (45.87%), Postives = 175/303 (57.76%), Query Frame = 1
Query:  409 SGAVYVKTLTGKVIALAAVVADTTVDKLKQMIHDTEGIPPDQQRLIWRGKALEDSRTVSDYGMKFCPELREPSVQILLRLRGGGSVTSG-RFADVADANAISRMAFSHNAPAWRVACPGLNVEGVCGTTGCRARGEMVIHGVGMGAFTLGDACACPLCRRPFAPVTCAFLACAWMFEGVKAGGGVALGGVWRAAGD-AYERFNTGADGESGGSMVEWERLVLVAKCRGRVR--PAAALA-------SGSSAQVDDCAVCLEPLCSWNVSLQAAVTPCGHVYHEACLKAWRRSSSTSRGTCASC 1284
            S A+YVKTL G+ + L+ V+   TVD LK  I D EGIP DQQRLI+ GK LEDSRTV DY M+     R+ ++ ++LRLRGGG   S  +FADV++  AI R +FS +AP WR    GLN+EG C    C+ARG +VI  +GM AF LG  C CP+C     PVTC F ACAW ++G K  G + + G WR AGD  YERF          +M  W RLVLVAK   +V+  P AA+A       +  +++ D+CAV L        S     T CGH YH  CL  WR  S  S   C +C
Sbjct:  153 SRAIYVKTLRGQSLPLSGVLPCDTVDILKDRISDCEGIPADQQRLIFAGKQLEDSRTVDDYSME-----RDSTLHLVLRLRGGGCGPSSLQFADVSNDGAIERRSFSQDAPRWRTVRRGLNMEGYCRDARCKARGALVIAPIGMAAFPLGSRCTCPMCGSAITPVTCGFNACAWTYDGAKEDGEL-VRGAWRTAGDDKYERFR------ESDNMATWSRLVLVAKPAVKVKSDPGAAVADAVDNKEAAGASEPDECAVGLRGF--GGRSGAVTTTRCGHRYHALCLAGWRECSHASCSKCPTC 441          
BLAST of jgi.p|Trimin1|157973 vs. uniprot
Match: A0A836C8N2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8N2_9STRA)

HSP 1 Score: 190 bits (483), Expect = 4.390e-53
Identity = 118/293 (40.27%), Postives = 163/293 (55.63%), Query Frame = 1
Query:  418 VYVKTLTGKVIALAAVVADTTVDKLKQMIHDTEGIPPDQQRLIWRGKALEDSRTVSDYGMKFCPELREPSVQILLRLRGGGSVTSGR--FADVADANAISRMAFSHNAPAWRVACPGLNVEGVCGTTGCRARGEMVIHGVGMGAFTLGDACACPLCRRPFAPVTCAFLACAWMFEGVKAGGGVALGGVWRAAGDAYERFNTGADGESGGSMVEWERLVLVAKCRGRVRPAAALASGSS--AQVDDCAVCLEPLCSWNVSLQAAVTPCGHVYHEACLKAWRRSSSTSRGTCASC 1284
            ++VKTL+G  I +  +    TV  L++ I   EG+P DQQ+L + GK L+ S T+ D+G+         +V ++L L GG S+   +  FADV+ ++A+ R++F  +AP WR AC GLN+EG C    C+AR ++VI  +GM AFTLG  CACP C     PVTC F AC WM+EG K  G +       A+ D Y R N        G+M  W RLVLVAK      P A+ A      A   +CAVCL PL +   ++  A   CGH Y+  CL+ W+ SS  +  TC +C
Sbjct:   37 IFVKTLSGSTITVHGLSHSDTVASLEEAIEGKEGVPVDQQKLSFAGKRLQPSHTLGDFGIG-----SGSTVHMVLSLCGGRSMPLLKIPFADVSRSDAMQRLSFDPDAPDWRTACEGLNMEGYCRNRACKARNKLVISMIGMNAFTLGSQCACPECGADVTPVTCGFYACTWMYEGAKTDGMLMRSPWHTASDDLYHRVN------EHGNMASWSRLVLVAK------PIASDAQDKDKDALPSECAVCLMPLAAAEHTVTRA---CGHRYYATCLQRWQESSIGA--TCTAC 307          
BLAST of jgi.p|Trimin1|157973 vs. uniprot
Match: A0A225VQY5_9STRA (Ubiquitin family protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VQY5_9STRA)

HSP 1 Score: 187 bits (476), Expect = 1.990e-51
Identity = 115/290 (39.66%), Postives = 163/290 (56.21%), Query Frame = 1
Query:  418 VYVKTLTGKVIALAAVVADTTVDKLKQMIHDTEGIPPDQQRLIWRGKALEDSRTVSDYGMKFCPELREPSVQILLRLRGGGS-VTSGRFADVADANAISRMAFSHNAPAWRVACPGLNVEGVCGTTGCRARGEMVIHGVGMGAFTL--GDACACPLCRRPFAPVTCAFLACAWMFEGVKAGGGVALGGVWR-AAGDAYERFNTGADGESGGSMVEWERLVLVAKCRGRVRPAAALASGSSAQVDDCAVCLE-------PLCSWNVSLQAA----VTPCGHVYHEACLKAW 1242
            +Y+KTLTGK + +     D+ +D +KQ I D +G PPDQQRLI+ GK LED RT+ DYG+         SV  +LRLRGGG  +TS  FADV+D + +    FS NAP WR    GLN+EG C   GC A G+M+I+      F L  GD   CP+C     P+TC F  C W F+G+++  G ++   W+ A+G+ Y RF+  AD + G   VEW+ L+++ K RG    A  +AS +  QV+      E       P+C W+++   A     T C H +H +C++ W
Sbjct:   75 IYIKTLTGKTLKIHCTSTDS-IDNVKQKIQDQDGTPPDQQRLIFAGKHLEDGRTLGDYGI-----FHGSSVCQVLRLRGGGGPLTSMYFADVSDNSILREHTFSTNAPQWRSCGKGLNIEGRCENRGCPAFGKMIIYPNRFNPFNLMRGDRAHCPMCGDDVKPLTCGFYDCVWKFDGIRSSDGFSISSPWKDASGEKYHRFD--ADEKHG--SVEWDSLLIMVKPRGEAASAKIIASPAIHQVNASTSDSEQESETICPIC-WSIAETVAGETITTHCEHTFHTSCIQEW 353          
BLAST of jgi.p|Trimin1|157973 vs. uniprot
Match: A0A6A3IE52_9STRA (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3IE52_9STRA)

HSP 1 Score: 181 bits (458), Expect = 1.230e-48
Identity = 125/316 (39.56%), Postives = 169/316 (53.48%), Query Frame = 1
Query:  328 LESTVHDFSSKLHHGAQ--LSFQRYVSHDSGAVYVKTLTGKVIALAAVVADTTVDKLKQMIHDTEGIPPDQQRLIWRGKALEDSRTVSDYGMKFCPELREPSVQILLRLRGGGSVTSGRFADVADANAISRMAFSHNAPAWRVACPGLNVEGVCGTTGCRARGEMVIHGVGMGAFTL---GDACACPLCRRPFAPVTCAFLACAWMFEGVKAGGGVALGGVWR-AAGDAYERFNTGADGESGGSMVEWERLVLVAKCRGRVRPAAALASGSSAQVDD---CAVCLEPLCSWNVSLQAAVTPCGHVYHEACLKAWRR 1248
            LES + D    L HG    L+    V   S  +Y+KTLTGK   +    A+T ++++K  I + EGIPPDQQR+I+ GK LED R +SDY +++   L      ++LRLRGG  V    FADV+D +      FS  AP WR+   GLN+EG C    C A  E+VIH  G   F L   GD   CP CR    PVTC F  CAW FEGVKA GG      W+  +G+ Y+RF+  AD  SG   +EWE L+++ K       A  + S   A++     CAVC   + S +     A + CGH++H  C++ W +
Sbjct:   76 LESLLPD----LLHGCPRLLASTSLVGSSSAMIYIKTLTGKTTHVNCHAANT-IEEIKYDIQEQEGIPPDQQRIIFAGKQLEDGRKLSDYNIQYGSTLH-----LVLRLRGG-YVEPRCFADVSDGSISVEHEFSRTAPEWRICRKGLNIEGRCMNRTCIAYHELVIHPAGFEMFNLRKDGDV-TCPKCRSKVKPVTCGFYDCAWKFEGVKARGGFFTSSPWQIVSGEKYQRFD--ADETSG--SIEWESLLILVKPLKEAVAAELVESAQEARLHSDLVCAVCWTEILSGS----GAGSECGHLFHCGCIENWSK 371          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|157973 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YTW7_9STRA0.000e+0100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z319_9STRA2.240e-26885.49Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZBV8_9STRA3.550e-13674.11Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CBY2_9STRA4.030e-10156.61Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YSA3_9STRA5.970e-10157.50Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZBQ4_9STRA5.430e-6745.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZEG5_9STRA1.930e-6545.87Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836C8N2_9STRA4.390e-5340.27Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A225VQY5_9STRA1.990e-5139.66Ubiquitin family protein n=1 Tax=Phytophthora mega... [more]
A0A6A3IE52_9STRA1.230e-4839.56Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_4contigContig_4:1311028..1312491 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|157973|e_gw1.4.346.1
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko04121
KEGG ModuleM00177,M00179
KEGG Pathwayko03010,map03010
KEGG koko:K02983
Descriptionstructural constituent of ribosome
COG categoryJ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG1552@1|root,KOG0003@2759|Eukaryota
Evalue3.49e-42
Seed ortholog2880.D7FKZ7
Hectar predicted targeting categoryother localisation
TranscriptId158295
TrackFilteredModels1
ProteinId157973
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157973gene_1678Tribonema minus UTEX_B_3156 geneContig_4 1311028..1312491 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157973Trimin1|157973|e_gw1.4.346.1Tribonema minus UTEX_B_3156 polypeptideContig_4 1311028..1312491 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1678_2exon_1678_2Tribonema minus UTEX_B_3156 exonContig_4 1311028..1311351 -
exon_1678_1exon_1678_1Tribonema minus UTEX_B_3156 exonContig_4 1311397..1312491 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1678CDS_1678Tribonema minus UTEX_B_3156 CDSContig_4 1311397..1312491 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1678 ID=mRNA_1678|Name=jgi.p|Trimin1|157973|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1419bp|location=Sequence derived from alignment at Contig_4:1311028..1312491- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCCTTGAGGACACGAACACACTGGAGCACTGCTACAGCCGAAAGCT
GATCCCCTGGGAGAGCAAGGTGCGCCTGTCAGCGCTGCGTGCAGACATCG
AGCTGCACATCAGCCTTGCGCAGCACCGAGGCACAGAGGGAGCGGCCAGT
GCTGCTGCTGTGCTGCCCCACGCTGCTGTGGACGTTATCAACCTGGTAGT
GCATCCGTGGGAGCGCATCAGCGGCGTCGTGCAGCGCGCATCACGCGCTT
TCTTTCGTGCCGGCGTGCTTCGCGCCGAACTTCACACACTCACCAAGGGC
AGCGCGGACGTTGGCAGGACCACCAGCCTAGAAAGCACTGTTCACGATTT
CAGCAGCAAGCTGCACCATGGAGCCCAGCTCTCGTTTCAACGCTATGTCA
GCCATGACAGCGGCGCTGTGTACGTGAAGACGCTGACGGGAAAGGTCATA
GCGCTGGCAGCGGTGGTGGCGGACACCACCGTAGACAAACTCAAGCAAAT
GATTCACGACACGGAGGGCATCCCTCCCGACCAGCAGCGCCTAATCTGGC
GCGGCAAGGCGCTCGAGGACAGCCGCACCGTCAGCGACTACGGCATGAAA
TTTTGCCCTGAGCTGCGTGAGCCCTCGGTCCAGATCCTACTGAGGCTGCG
CGGCGGCGGCAGCGTCACTAGTGGCCGGTTTGCCGATGTAGCCGACGCGA
ACGCCATCTCTCGCATGGCATTCTCCCACAACGCCCCCGCGTGGCGCGTG
GCGTGCCCCGGGCTCAACGTCGAGGGCGTGTGCGGCACCACTGGGTGCAG
GGCGCGCGGCGAGATGGTCATCCACGGGGTCGGCATGGGCGCATTCACGC
TCGGCGACGCGTGCGCGTGCCCGCTGTGCCGCAGGCCGTTCGCGCCCGTC
ACGTGCGCCTTCCTCGCCTGCGCGTGGATGTTCGAGGGCGTCAAGGCGGG
CGGCGGGGTGGCGCTTGGCGGCGTGTGGCGCGCGGCGGGCGACGCCTACG
AGCGCTTCAACACGGGCGCGGACGGCGAAAGCGGCGGCAGCATGGTGGAG
TGGGAGCGGCTGGTGCTCGTCGCCAAGTGTCGTGGGCGCGTGCGCCCCGC
TGCTGCGCTGGCCAGTGGCAGCAGTGCTCAGGTGGACGACTGCGCCGTGT
GCCTGGAGCCGCTGTGCTCGTGGAACGTCAGCCTTCAGGCAGCGGTGACG
CCATGCGGGCACGTGTACCACGAGGCGTGCCTGAAGGCGTGGCGGCGCAG
CAGCAGCACCAGCCGCGGCACCTGCGCCTCGTGCTGCGCCGACCTGAAAT
TGTCATCACGACCAGTGCGTGCTGCCGCGGCCTTGTGTGCCTGCGAGCAC
AGCTGGGCAGAGGCAGGCAGTGCAGCCCCTCCGAGCCTTGCAGCAGCACT
GAGCCAGCTGAGTACTTGA
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protein sequence of jgi.p|Trimin1|157973

>Trimin1|157973|e_gw1.4.346.1 ID=Trimin1|157973|e_gw1.4.346.1|Name=jgi.p|Trimin1|157973|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=473bp
MFLEDTNTLEHCYSRKLIPWESKVRLSALRADIELHISLAQHRGTEGAAS
AAAVLPHAAVDVINLVVHPWERISGVVQRASRAFFRAGVLRAELHTLTKG
SADVGRTTSLESTVHDFSSKLHHGAQLSFQRYVSHDSGAVYVKTLTGKVI
ALAAVVADTTVDKLKQMIHDTEGIPPDQQRLIWRGKALEDSRTVSDYGMK
FCPELREPSVQILLRLRGGGSVTSGRFADVADANAISRMAFSHNAPAWRV
ACPGLNVEGVCGTTGCRARGEMVIHGVGMGAFTLGDACACPLCRRPFAPV
TCAFLACAWMFEGVKAGGGVALGGVWRAAGDAYERFNTGADGESGGSMVE
WERLVLVAKCRGRVRPAAALASGSSAQVDDCAVCLEPLCSWNVSLQAAVT
PCGHVYHEACLKAWRRSSSTSRGTCASCCADLKLSSRPVRAAAALCACEH
SWAEAGSAAPPSLAAALSQLST*
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mRNA from alignment at Contig_4:1311028..1312491-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1678 ID=mRNA_1678|Name=jgi.p|Trimin1|157973|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1464bp|location=Sequence derived from alignment at Contig_4:1311028..1312491- (Tribonema minus UTEX_B_3156 )
ATGTTCCTTGAGGACACGAACACACTGGAGCACTGCTACAGCCGAAAGCT GATCCCCTGGGAGAGCAAGGTGCGCCTGTCAGCGCTGCGTGCAGACATCG AGCTGCACATCAGCCTTGCGCAGCACCGAGGCACAGAGGGAGCGGCCAGT GCTGCTGCTGTGCTGCCCCACGCTGCTGTGGACGTTATCAACCTGGTAGT GCATCCGTGGGAGCGCATCAGCGGCGTCGTGCAGCGCGCATCACGCGCTT TCTTTCGTGCCGGCGTGCTTCGCGCCGAACTTCACACACTCACCAAGGGC AGCGCGGACGTTGGCAGGACCACCAGCCTAGAAAGCACTGTTCACGATTT CAGCAGCAAGCTGCACCATGGAGCCCAGCTCTCGTTTCAACGCTATGTCA GCCATGACAGCGGCGCTGTGTACGTGAAGACGCTGACGGGAAAGGTCATA GCGCTGGCAGCGGTGGTGGCGGACACCACCGTAGACAAACTCAAGCAAAT GATTCACGACACGGAGGGCATCCCTCCCGACCAGCAGCGCCTAATCTGGC GCGGCAAGGCGCTCGAGGACAGCCGCACCGTCAGCGACTACGGCATGAAA TTTTGCCCTGAGCTGCGTGAGCCCTCGGTCCAGATCCTACTGAGGCTGCG CGGCGGCGGCAGCGTCACTAGTGGCCGGTTTGCCGATGTAGCCGACGCGA ACGCCATCTCTCGCATGGCATTCTCCCACAACGCCCCCGCGTGGCGCGTG GCGTGCCCCGGGCTCAACGTCGAGGGCGTGTGCGGCACCACTGGGTGCAG GGCGCGCGGCGAGATGGTCATCCACGGGGTCGGCATGGGCGCATTCACGC TCGGCGACGCGTGCGCGTGCCCGCTGTGCCGCAGGCCGTTCGCGCCCGTC ACGTGCGCCTTCCTCGCCTGCGCGTGGATGTTCGAGGGCGTCAAGGCGGG CGGCGGGGTGGCGCTTGGCGGCGTGTGGCGCGCGGCGGGCGACGCCTACG AGCGCTTCAACACGGGCGCGGACGGCGAAAGCGGCGGCAGCATGGTGGAG TGGGAGCGGCTGGTGCTCGTCGCCAAGTGTCGTGGGCGCGTGCGCGTCCC TGCCGCCGGCACGGCCTCTGCCGGCGGCGTCGCACGCGAGCCCGCTGCTG CGCTGGCCAGTGGCAGCAGTGCTCAGGTGGACGACTGCGCCGTGTGCCTG GAGCCGCTGTGCTCGTGGAACGTCAGCCTTCAGGCAGCGGTGACGCCATG CGGGCACGTGTACCACGAGGCGTGCCTGAAGGCGTGGCGGCGCAGCAGCA GCACCAGCCGCGGCACCTGCGCCTCGTGCTGCGCCGACCTGAAATTGTCA TCACGACCAGTGCGTGCTGCCGCGGCCTTGTGTGCCTGCGAGCACAGCTG GGCAGAGGCAGGCAGTGCAGCCCCTCCGAGCCTTGCAGCAGCACTGAGCC AGCTGAGTACTTGA
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Coding sequence (CDS) from alignment at Contig_4:1311028..1312491-

>mRNA_1678 ID=mRNA_1678|Name=jgi.p|Trimin1|157973|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1419bp|location=Sequence derived from alignment at Contig_4:1311028..1312491- (Tribonema minus UTEX_B_3156 )
ATGTTCCTTGAGGACACGAACACACTGGAGCACTGCTACAGCCGAAAGCT
GATCCCCTGGGAGAGCAAGGTGCGCCTGTCAGCGCTGCGTGCAGACATCG
AGCTGCACATCAGCCTTGCGCAGCACCGAGGCACAGAGGGAGCGGCCAGT
GCTGCTGCTGTGCTGCCCCACGCTGCTGTGGACGTTATCAACCTGGTAGT
GCATCCGTGGGAGCGCATCAGCGGCGTCGTGCAGCGCGCATCACGCGCTT
TCTTTCGTGCCGGCGTGCTTCGCGCCGAACTTCACACACTCACCAAGGGC
AGCGCGGACGTTGGCAGGACCACCAGCCTAGAAAGCACTGTTCACGATTT
CAGCAGCAAGCTGCACCATGGAGCCCAGCTCTCGTTTCAACGCTATGTCA
GCCATGACAGCGGCGCTGTGTACGTGAAGACGCTGACGGGAAAGGTCATA
GCGCTGGCAGCGGTGGTGGCGGACACCACCGTAGACAAACTCAAGCAAAT
GATTCACGACACGGAGGGCATCCCTCCCGACCAGCAGCGCCTAATCTGGC
GCGGCAAGGCGCTCGAGGACAGCCGCACCGTCAGCGACTACGGCATGAAA
TTTTGCCCTGAGCTGCGTGAGCCCTCGGTCCAGATCCTACTGAGGCTGCG
CGGCGGCGGCAGCGTCACTAGTGGCCGGTTTGCCGATGTAGCCGACGCGA
ACGCCATCTCTCGCATGGCATTCTCCCACAACGCCCCCGCGTGGCGCGTG
GCGTGCCCCGGGCTCAACGTCGAGGGCGTGTGCGGCACCACTGGGTGCAG
GGCGCGCGGCGAGATGGTCATCCACGGGGTCGGCATGGGCGCATTCACGC
TCGGCGACGCGTGCGCGTGCCCGCTGTGCCGCAGGCCGTTCGCGCCCGTC
ACGTGCGCCTTCCTCGCCTGCGCGTGGATGTTCGAGGGCGTCAAGGCGGG
CGGCGGGGTGGCGCTTGGCGGCGTGTGGCGCGCGGCGGGCGACGCCTACG
AGCGCTTCAACACGGGCGCGGACGGCGAAAGCGGCGGCAGCATGGTGGAG
TGGGAGCGGCTGGTGCTCGTCGCCAAGTGTCGTGGGCGCGTGCGCCCCGC
TGCTGCGCTGGCCAGTGGCAGCAGTGCTCAGGTGGACGACTGCGCCGTGT
GCCTGGAGCCGCTGTGCTCGTGGAACGTCAGCCTTCAGGCAGCGGTGACG
CCATGCGGGCACGTGTACCACGAGGCGTGCCTGAAGGCGTGGCGGCGCAG
CAGCAGCACCAGCCGCGGCACCTGCGCCTCGTGCTGCGCCGACCTGAAAT
TGTCATCACGACCAGTGCGTGCTGCCGCGGCCTTGTGTGCCTGCGAGCAC
AGCTGGGCAGAGGCAGGCAGTGCAGCCCCTCCGAGCCTTGCAGCAGCACT
GAGCCAGCTGAGTACTTGA
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