mRNA_1678 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|157973 vs. uniprot
Match: A0A835YTW7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTW7_9STRA) HSP 1 Score: 931 bits (2406), Expect = 0.000e+0 Identity = 472/472 (100.00%), Postives = 472/472 (100.00%), Query Frame = 1 Query: 1 MFLEDTNTLEHCYSRKLIPWESKVRLSALRADIELHISLAQHRGTEGAASAAAVLPHAAVDVINLVVHPWERISGVVQRASRAFFRAGVLRAELHTLTKGSADVGRTTSLESTVHDFSSKLHHGAQLSFQRYVSHDSGAVYVKTLTGKVIALAAVVADTTVDKLKQMIHDTEGIPPDQQRLIWRGKALEDSRTVSDYGMKFCPELREPSVQILLRLRGGGSVTSGRFADVADANAISRMAFSHNAPAWRVACPGLNVEGVCGTTGCRARGEMVIHGVGMGAFTLGDACACPLCRRPFAPVTCAFLACAWMFEGVKAGGGVALGGVWRAAGDAYERFNTGADGESGGSMVEWERLVLVAKCRGRVRPAAALASGSSAQVDDCAVCLEPLCSWNVSLQAAVTPCGHVYHEACLKAWRRSSSTSRGTCASCCADLKLSSRPVRAAAALCACEHSWAEAGSAAPPSLAAALSQLST 1416 MFLEDTNTLEHCYSRKLIPWESKVRLSALRADIELHISLAQHRGTEGAASAAAVLPHAAVDVINLVVHPWERISGVVQRASRAFFRAGVLRAELHTLTKGSADVGRTTSLESTVHDFSSKLHHGAQLSFQRYVSHDSGAVYVKTLTGKVIALAAVVADTTVDKLKQMIHDTEGIPPDQQRLIWRGKALEDSRTVSDYGMKFCPELREPSVQILLRLRGGGSVTSGRFADVADANAISRMAFSHNAPAWRVACPGLNVEGVCGTTGCRARGEMVIHGVGMGAFTLGDACACPLCRRPFAPVTCAFLACAWMFEGVKAGGGVALGGVWRAAGDAYERFNTGADGESGGSMVEWERLVLVAKCRGRVRPAAALASGSSAQVDDCAVCLEPLCSWNVSLQAAVTPCGHVYHEACLKAWRRSSSTSRGTCASCCADLKLSSRPVRAAAALCACEHSWAEAGSAAPPSLAAALSQLST Sbjct: 1 MFLEDTNTLEHCYSRKLIPWESKVRLSALRADIELHISLAQHRGTEGAASAAAVLPHAAVDVINLVVHPWERISGVVQRASRAFFRAGVLRAELHTLTKGSADVGRTTSLESTVHDFSSKLHHGAQLSFQRYVSHDSGAVYVKTLTGKVIALAAVVADTTVDKLKQMIHDTEGIPPDQQRLIWRGKALEDSRTVSDYGMKFCPELREPSVQILLRLRGGGSVTSGRFADVADANAISRMAFSHNAPAWRVACPGLNVEGVCGTTGCRARGEMVIHGVGMGAFTLGDACACPLCRRPFAPVTCAFLACAWMFEGVKAGGGVALGGVWRAAGDAYERFNTGADGESGGSMVEWERLVLVAKCRGRVRPAAALASGSSAQVDDCAVCLEPLCSWNVSLQAAVTPCGHVYHEACLKAWRRSSSTSRGTCASCCADLKLSSRPVRAAAALCACEHSWAEAGSAAPPSLAAALSQLST 472
BLAST of jgi.p|Trimin1|157973 vs. uniprot
Match: A0A835Z319_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z319_9STRA) HSP 1 Score: 745 bits (1923), Expect = 2.240e-268 Identity = 383/448 (85.49%), Postives = 398/448 (88.84%), Query Frame = 1 Query: 4 FLEDTNTLEHCYSRKLIPWESKVRL--SALRADIELHISLAQHRGTEGAASAAAVLPHAAVDVINLVVHPWERISGVVQRASRAFFRAGVLRAELHTLTKGSADVGRTTSLESTVHDFSSKLHHGAQLSFQRYVSHDSGAVYVKTLTGKVIALAAVVADTTVDKLKQMIHDTEGIPPDQQRLIWRGKALEDSRTVSDYGMKFCPELREPSVQILLRLRGGGSVTSGRFADVADANAISRMAFSHNAPAWRVACPGLNVEGVCGTTGCRARGEMVIHGVGMGAFTLGDACACPLCRRPFAPVTCAFLACAWMFEGVKAGGGVALGGVWRAAGDAYERFNTGADGESGGSMVEWERLVLVAKCRGRVR---------------PAAALASGSSAQVDDCAVCLEPLCSWNVSLQAAVTPCGHVYHEACLKAWRRSSSTSRGTCASCCADL 1296 FLEDT+TLE CYS K IPWESKVRL SA+RADIELHISLAQH GTEGAASAAAVLPHAAVD I LVVHPWERISGVVQRASRAFF AGV +AELHTLTKGSADVGRTTSL+S V+DFSSKLHHGAQLSF+RYVSHDSGAVYVKTLTGK +ALAAVVADTTVDKLKQM D + IPPDQQRL WRGK LEDSRTVSDYGMKFCP+LREP++Q+ LRLRGGG VT GRFADVAD NAIS MAFSHNAPAWRVACPGLNVEGVCGTTGCRARG+MVI GVGMGAFTLGDACACPLCRRPFAPVTCAF ACAWMFEGVKAGGG ALGGVWR AGDAYERFNTGADGESGGSMVEWERLVLVAK RGR R PAAALASGS AQVDDCAVCLEPL SW+VSLQAAVTPCGHVYHEACLKAWRRSSS S GTC SC A+L Sbjct: 25 FLEDTSTLERCYSEKRIPWESKVRLRLSAVRADIELHISLAQHGGTEGAASAAAVLPHAAVDAITLVVHPWERISGVVQRASRAFFPAGVPQAELHTLTKGSADVGRTTSLDSAVYDFSSKLHHGAQLSFERYVSHDSGAVYVKTLTGKTVALAAVVADTTVDKLKQMFQDAQSIPPDQQRLRWRGKMLEDSRTVSDYGMKFCPQLREPTLQLELRLRGGGCVTGGRFADVADLNAISHMAFSHNAPAWRVACPGLNVEGVCGTTGCRARGKMVIRGVGMGAFTLGDACACPLCRRPFAPVTCAFHACAWMFEGVKAGGGAALGGVWREAGDAYERFNTGADGESGGSMVEWERLVLVAKYRGRKRIPAADAAAAGGVAGEPAAALASGSGAQVDDCAVCLEPLHSWHVSLQAAVTPCGHVYHEACLKAWRRSSSASNGTCPSCRANL 472
BLAST of jgi.p|Trimin1|157973 vs. uniprot
Match: A0A835ZBV8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBV8_9STRA) HSP 1 Score: 402 bits (1033), Expect = 3.550e-136 Identity = 209/282 (74.11%), Postives = 220/282 (78.01%), Query Frame = 1 Query: 499 MIHDTEGIPPDQQRLIWRGKALEDSRTVSDYGMKFCPELREPSVQILLRLRGGGSVTSGRFADVADANAISRMAFSHNAPAWRVACPGLNVEGVCGTTGCRARGEMVIHGVGMGAFTLGDACACPLCRRPFAPVTCAFLACAWMFEGVKAGGGVALGGVWRAAGDAYERFNTGADGESGGSMVEWERLVLVAKCRGRVR--------------PAAALASGSSAQVDDCAVCLEPLCS--WNVSLQAAVTPCGHVYHEACLKAWRRSSSTSRGTCASCCADL 1296 MI D EGIP DQQRL W G ALE RTVSDY MKFCPEL EP++Q++L LRGGG VT GRFADVADA++ISRMAF +AP WRVACPGLN EGVC TT CRARGEMVIH VGMGAFTLGDACACPLCRRPF PVTCAF C WMFEGVKAGGG ALG VWR AGDAYERFNTGA+GESGGSMVEWERLVLVAK RG VR AA A GS AQVDDCAVCLEPL S W + A TPCGHVYHEACLKAWRRSSS + TC +C ADL Sbjct: 1 MIQDAEGIPLDQQRLCWHGTALEGCRTVSDYNMKFCPELCEPTLQLVLMLRGGGCVTGGRFADVADASSISRMAFDDDAPKWRVACPGLNAEGVCSTTWCRARGEMVIHEVGMGAFTLGDACACPLCRRPFTPVTCAFHDCVWMFEGVKAGGGAALGSVWREAGDAYERFNTGAEGESGGSMVEWERLVLVAKYRGHVRVPDAGTAAARSVAGEPAAPAGGSGAQVDDCAVCLEPLHSRIW----EPAETPCGHVYHEACLKAWRRSSSAASATCPTCRADL 278
BLAST of jgi.p|Trimin1|157973 vs. uniprot
Match: A0A836CBY2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBY2_9STRA) HSP 1 Score: 313 bits (803), Expect = 4.030e-101 Identity = 167/295 (56.61%), Postives = 199/295 (67.46%), Query Frame = 1 Query: 448 IALAAVVADTTVDKLKQMIHDTEGIPPDQQRLIWRGKALEDSRTVSDYGMKFCPELRE-PSVQILLRLRGGGSVTSGRFADVADANAISRMAFSHNAPAWRVACPGLNVEGVCGTTGCRARGEMVIHGVGMGAFTLGDACACPLCRRPFAPVTCAFLACAWMFEGVKAGGGVALGGVWRAAGDAYERFNTGADGESGGSMVEWERLVLVAKCRGRVRPAAA-----------LASGSSAQVDDCAVCLEPLCSWNVSLQAAVTPCGHVYHEACLKAWRRSSSTSRGTCASCCADL 1296 + L AV A T V +LKQ+I D EGIPP+QQRLIW GK LED R++S+Y + P++ + P++ ++LR+RGGG FADVADAN ISR+AFS P WR+AC GLN+EG+C C A G+MVIH +GMGAFTLG ACACPLC P P+TCAF C WMFEGVKA AL WR AGD YERFNTG +G G+MVEWERLVL+AK R + AAA L S S Q+DDCAVCLEPL + S TPCGH+YH+ACL AW+R SS G C C ADL Sbjct: 2 VLLGAVTARTLVCELKQIITDLEGIPPEQQRLIWCGKQLEDRRSLSEYHID--PDINDLPALHLVLRMRGGGPT----FADVADANGISRIAFSDTGPKWRIACEGLNIEGLCTNAECAAHGKMVIHKIGMGAFTLGGACACPLCDAPIVPLTCAFHRCVWMFEGVKADSCAALSTAWREAGDTYERFNTGTEGSGSGAMVEWERLVLIAKGRDSIHAAAAYTAVVCSKSGELTSSSGTQLDDCAVCLEPLRTLFASF--VKTPCGHLYHKACLTAWQRCSSAGSGRCPMCRADL 288
BLAST of jgi.p|Trimin1|157973 vs. uniprot
Match: A0A835YSA3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSA3_9STRA) HSP 1 Score: 313 bits (801), Expect = 5.970e-101 Identity = 161/280 (57.50%), Postives = 195/280 (69.64%), Query Frame = 1 Query: 469 ADTTVDKLKQMIHDTEGIPPDQQRLIWRGKALEDSRTVSDYGMKFCPE-LREPSVQILLRLRGGGSVTSGRFADVADANAISRMAFSHNAPAWRVACPGLNVEGVCGTTGCRARGEMVIHGVGMGAFTLGDACACPLCRRPFAPVTCAFLACAWMFEGVKAGGGVALGGVWRAAGDAYERFNTGADGESGGSMVEWERLVLVAKCRGRVRPAAAL---ASGSSAQVDDCAVCLEPLCSWNVSLQAAVTPCGHVYHEACLKAWRRSSSTSRGTCASCCADL 1296 A T V ++KQ I TEG PP+QQRLIW GK L+DSR++ + M P+ + P++Q++ RLRGGGS++ G FADVADAN ISR+AFS AP WR+AC GLN+EG+C C A G+MVIH +GMGAF LG ACACPLC P P+TCAF C WMFEGVKA GG +L WR AGD+YERFNTG +G S G+MVEWER +L+AK R AA AS + Q+DDCAVCLEPL + TPCGH+YH+ACL AW+R SS G C C ADL Sbjct: 2 ARTLVHEVKQTIQRTEGFPPEQQRLIWSGKELKDSRSLRQHFMFPGPDNIHPPTLQLIPRLRGGGSLSGGMFADVADANGISRIAFSETAPEWRIACEGLNIEGLCSNAECAAHGQMVIHKIGMGAFALGGACACPLCVAPIVPLTCAFHRCVWMFEGVKADGGASLSTAWREAGDSYERFNTGTEGTSSGAMVEWERFMLIAKGRKFTCARAADTEDASSNGTQLDDCAVCLEPLRTRRAPF--VKTPCGHLYHKACLTAWQRCSSAGSGRCPMCRADL 279
BLAST of jgi.p|Trimin1|157973 vs. uniprot
Match: A0A835ZBQ4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBQ4_9STRA) HSP 1 Score: 229 bits (584), Expect = 5.430e-67 Identity = 135/300 (45.00%), Postives = 178/300 (59.33%), Query Frame = 1 Query: 418 VYVKTLTGKVIALAAVVADTTVDKLKQMIHDTEGIPPDQQRLIWRGKALEDSRTVSDYGMKFCPELREPSVQILLRLRGGGSVTSG-RFADVADANAISRMAFSHNAPAWRVACPGLNVEGVCGTTGCRARGEMVIHGVGMGAFTLGDACACPLCRRPFAPVTCAFLACAWMFEGVKAGGGVALGGVWRAAGD-AYERFNTGADGESGGSMVEWERLVLVAKCRGRVRP----AAALASGSSA-----QVDDCAVCLEPLCSWNVSLQAAVTPCGHVYHEACLKAWRRSSSTSRGTCASC 1284 ++VKTLTG L V++ T+D LK+MI D EGI PDQQR+I+ G+ LED R+V+DY ++ +E ++ ++LRLRGGG SG +FADV + A+ R + S +AP WR G+N+EG C C AR +VI VGM AF LG C CP+C PVTC F ACAW ++G K GG + + G WR AGD Y+RF +M W RLVLVAK +V+P AA +SG+ Q D+CAVCL S + S +A TPCG+ YH CL +WR S S C +C Sbjct: 109 LFVKTLTGACFELDDVLSGDTIDALKEMIQDLEGILPDQQRIIFAGRQLEDGRSVADYSIQ-----KEHTLHLVLRLRGGGCGPSGLQFADVTNDGAMERRSVSDDAPVWRTVRRGINMEGYCRNLRCEARVTLVIAPVGMAAFPLGSLCPCPVCYSAITPVTCGFYACAWTYDGAKEGGEL-VRGAWRTAGDDKYDRFR------ESDNMTTWSRLVLVAKPAVKVKPKPRATAAESSGADKAAGRLQPDECAVCLRGFGSGDGSSKATSTPCGYRYHALCLASWRECSHASCSKCPTC 396
BLAST of jgi.p|Trimin1|157973 vs. uniprot
Match: A0A835ZEG5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEG5_9STRA) HSP 1 Score: 226 bits (577), Expect = 1.930e-65 Identity = 139/303 (45.87%), Postives = 175/303 (57.76%), Query Frame = 1 Query: 409 SGAVYVKTLTGKVIALAAVVADTTVDKLKQMIHDTEGIPPDQQRLIWRGKALEDSRTVSDYGMKFCPELREPSVQILLRLRGGGSVTSG-RFADVADANAISRMAFSHNAPAWRVACPGLNVEGVCGTTGCRARGEMVIHGVGMGAFTLGDACACPLCRRPFAPVTCAFLACAWMFEGVKAGGGVALGGVWRAAGD-AYERFNTGADGESGGSMVEWERLVLVAKCRGRVR--PAAALA-------SGSSAQVDDCAVCLEPLCSWNVSLQAAVTPCGHVYHEACLKAWRRSSSTSRGTCASC 1284 S A+YVKTL G+ + L+ V+ TVD LK I D EGIP DQQRLI+ GK LEDSRTV DY M+ R+ ++ ++LRLRGGG S +FADV++ AI R +FS +AP WR GLN+EG C C+ARG +VI +GM AF LG C CP+C PVTC F ACAW ++G K G + + G WR AGD YERF +M W RLVLVAK +V+ P AA+A + +++ D+CAV L S T CGH YH CL WR S S C +C Sbjct: 153 SRAIYVKTLRGQSLPLSGVLPCDTVDILKDRISDCEGIPADQQRLIFAGKQLEDSRTVDDYSME-----RDSTLHLVLRLRGGGCGPSSLQFADVSNDGAIERRSFSQDAPRWRTVRRGLNMEGYCRDARCKARGALVIAPIGMAAFPLGSRCTCPMCGSAITPVTCGFNACAWTYDGAKEDGEL-VRGAWRTAGDDKYERFR------ESDNMATWSRLVLVAKPAVKVKSDPGAAVADAVDNKEAAGASEPDECAVGLRGF--GGRSGAVTTTRCGHRYHALCLAGWRECSHASCSKCPTC 441
BLAST of jgi.p|Trimin1|157973 vs. uniprot
Match: A0A836C8N2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8N2_9STRA) HSP 1 Score: 190 bits (483), Expect = 4.390e-53 Identity = 118/293 (40.27%), Postives = 163/293 (55.63%), Query Frame = 1 Query: 418 VYVKTLTGKVIALAAVVADTTVDKLKQMIHDTEGIPPDQQRLIWRGKALEDSRTVSDYGMKFCPELREPSVQILLRLRGGGSVTSGR--FADVADANAISRMAFSHNAPAWRVACPGLNVEGVCGTTGCRARGEMVIHGVGMGAFTLGDACACPLCRRPFAPVTCAFLACAWMFEGVKAGGGVALGGVWRAAGDAYERFNTGADGESGGSMVEWERLVLVAKCRGRVRPAAALASGSS--AQVDDCAVCLEPLCSWNVSLQAAVTPCGHVYHEACLKAWRRSSSTSRGTCASC 1284 ++VKTL+G I + + TV L++ I EG+P DQQ+L + GK L+ S T+ D+G+ +V ++L L GG S+ + FADV+ ++A+ R++F +AP WR AC GLN+EG C C+AR ++VI +GM AFTLG CACP C PVTC F AC WM+EG K G + A+ D Y R N G+M W RLVLVAK P A+ A A +CAVCL PL + ++ A CGH Y+ CL+ W+ SS + TC +C Sbjct: 37 IFVKTLSGSTITVHGLSHSDTVASLEEAIEGKEGVPVDQQKLSFAGKRLQPSHTLGDFGIG-----SGSTVHMVLSLCGGRSMPLLKIPFADVSRSDAMQRLSFDPDAPDWRTACEGLNMEGYCRNRACKARNKLVISMIGMNAFTLGSQCACPECGADVTPVTCGFYACTWMYEGAKTDGMLMRSPWHTASDDLYHRVN------EHGNMASWSRLVLVAK------PIASDAQDKDKDALPSECAVCLMPLAAAEHTVTRA---CGHRYYATCLQRWQESSIGA--TCTAC 307
BLAST of jgi.p|Trimin1|157973 vs. uniprot
Match: A0A225VQY5_9STRA (Ubiquitin family protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VQY5_9STRA) HSP 1 Score: 187 bits (476), Expect = 1.990e-51 Identity = 115/290 (39.66%), Postives = 163/290 (56.21%), Query Frame = 1 Query: 418 VYVKTLTGKVIALAAVVADTTVDKLKQMIHDTEGIPPDQQRLIWRGKALEDSRTVSDYGMKFCPELREPSVQILLRLRGGGS-VTSGRFADVADANAISRMAFSHNAPAWRVACPGLNVEGVCGTTGCRARGEMVIHGVGMGAFTL--GDACACPLCRRPFAPVTCAFLACAWMFEGVKAGGGVALGGVWR-AAGDAYERFNTGADGESGGSMVEWERLVLVAKCRGRVRPAAALASGSSAQVDDCAVCLE-------PLCSWNVSLQAA----VTPCGHVYHEACLKAW 1242 +Y+KTLTGK + + D+ +D +KQ I D +G PPDQQRLI+ GK LED RT+ DYG+ SV +LRLRGGG +TS FADV+D + + FS NAP WR GLN+EG C GC A G+M+I+ F L GD CP+C P+TC F C W F+G+++ G ++ W+ A+G+ Y RF+ AD + G VEW+ L+++ K RG A +AS + QV+ E P+C W+++ A T C H +H +C++ W Sbjct: 75 IYIKTLTGKTLKIHCTSTDS-IDNVKQKIQDQDGTPPDQQRLIFAGKHLEDGRTLGDYGI-----FHGSSVCQVLRLRGGGGPLTSMYFADVSDNSILREHTFSTNAPQWRSCGKGLNIEGRCENRGCPAFGKMIIYPNRFNPFNLMRGDRAHCPMCGDDVKPLTCGFYDCVWKFDGIRSSDGFSISSPWKDASGEKYHRFD--ADEKHG--SVEWDSLLIMVKPRGEAASAKIIASPAIHQVNASTSDSEQESETICPIC-WSIAETVAGETITTHCEHTFHTSCIQEW 353
BLAST of jgi.p|Trimin1|157973 vs. uniprot
Match: A0A6A3IE52_9STRA (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3IE52_9STRA) HSP 1 Score: 181 bits (458), Expect = 1.230e-48 Identity = 125/316 (39.56%), Postives = 169/316 (53.48%), Query Frame = 1 Query: 328 LESTVHDFSSKLHHGAQ--LSFQRYVSHDSGAVYVKTLTGKVIALAAVVADTTVDKLKQMIHDTEGIPPDQQRLIWRGKALEDSRTVSDYGMKFCPELREPSVQILLRLRGGGSVTSGRFADVADANAISRMAFSHNAPAWRVACPGLNVEGVCGTTGCRARGEMVIHGVGMGAFTL---GDACACPLCRRPFAPVTCAFLACAWMFEGVKAGGGVALGGVWR-AAGDAYERFNTGADGESGGSMVEWERLVLVAKCRGRVRPAAALASGSSAQVDD---CAVCLEPLCSWNVSLQAAVTPCGHVYHEACLKAWRR 1248 LES + D L HG L+ V S +Y+KTLTGK + A+T ++++K I + EGIPPDQQR+I+ GK LED R +SDY +++ L ++LRLRGG V FADV+D + FS AP WR+ GLN+EG C C A E+VIH G F L GD CP CR PVTC F CAW FEGVKA GG W+ +G+ Y+RF+ AD SG +EWE L+++ K A + S A++ CAVC + S + A + CGH++H C++ W + Sbjct: 76 LESLLPD----LLHGCPRLLASTSLVGSSSAMIYIKTLTGKTTHVNCHAANT-IEEIKYDIQEQEGIPPDQQRIIFAGKQLEDGRKLSDYNIQYGSTLH-----LVLRLRGG-YVEPRCFADVSDGSISVEHEFSRTAPEWRICRKGLNIEGRCMNRTCIAYHELVIHPAGFEMFNLRKDGDV-TCPKCRSKVKPVTCGFYDCAWKFEGVKARGGFFTSSPWQIVSGEKYQRFD--ADETSG--SIEWESLLILVKPLKEAVAAELVESAQEARLHSDLVCAVCWTEILSGS----GAGSECGHLFHCGCIENWSK 371 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|157973 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_1678 ID=mRNA_1678|Name=jgi.p|Trimin1|157973|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1419bp|location=Sequence derived from alignment at Contig_4:1311028..1312491- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGTTCCTTGAGGACACGAACACACTGGAGCACTGCTACAGCCGAAAGCTback to top protein sequence of jgi.p|Trimin1|157973 >Trimin1|157973|e_gw1.4.346.1 ID=Trimin1|157973|e_gw1.4.346.1|Name=jgi.p|Trimin1|157973|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=473bp MFLEDTNTLEHCYSRKLIPWESKVRLSALRADIELHISLAQHRGTEGAASback to top mRNA from alignment at Contig_4:1311028..1312491- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_1678 ID=mRNA_1678|Name=jgi.p|Trimin1|157973|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1464bp|location=Sequence derived from alignment at Contig_4:1311028..1312491- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_4:1311028..1312491- >mRNA_1678 ID=mRNA_1678|Name=jgi.p|Trimin1|157973|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1419bp|location=Sequence derived from alignment at Contig_4:1311028..1312491- (Tribonema minus UTEX_B_3156 )back to top |