mRNA_16769 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352916
Unique NamemRNA_16769
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|352916 vs. uniprot
Match: A0A835ZIS8_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIS8_9STRA)

HSP 1 Score: 262 bits (669), Expect = 5.680e-84
Identity = 127/152 (83.55%), Postives = 131/152 (86.18%), Query Frame = -1 
Query:    3 PSAYLYDVGVHEDSHNLQFRAHYGDLGLHENFEMESAWSWVALRRVCLWGESLAALFGIPASVWGQSLADALLGVIWGAR*TTVSPIIGGNALLSYIAFLSSVSAWRPVTPSAYLYDIGVHVDSHNLQFRAHYGDLGLHENFEMESAWSWVA 458
            PSAYLYD+GVH DSHNLQFRAH+GDLGLHENFEMESAWSWVALRRVCLWGESLAALFGIPASVWG       +G   G          GG+ALLSYIAFLSSVSAWRPVTPSAYLYDIGVHVDSHNLQFRAHYGDLGLHENFEMESAWSWVA
Sbjct:  120 PSAYLYDIGVHVDSHNLQFRAHHGDLGLHENFEMESAWSWVALRRVCLWGESLAALFGIPASVWGTVACGCFVGGDMGGPVNHRPAHQGGDALLSYIAFLSSVSAWRPVTPSAYLYDIGVHVDSHNLQFRAHYGDLGLHENFEMESAWSWVA 271
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BLAST of jgi.p|Trimin1|352916 vs. uniprot
Match: A0A835ZJ73_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ73_9STRA)

HSP 1 Score: 228 bits (582), Expect = 1.190e-73
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 3 
Query:  372 MQAKVTIMGPELEIVAIFVNPDIIEISRGRSFGSIGEQGRKLLEAVATEYASRMSVPGGARPKALKGIALARLRSALSAALHMAYSGRVITHMAESRGGGHMEEDVGEDPEMPFGGGGV 728
            MQAKVTIMGPELEIVAIFVNPDIIEISRGRSFGSIGEQGRKLLEAVATEYASRMSVPGGARPKALKGIALARLRSALSAALHMAYSGRVITHMAESRGGGHMEEDVGEDPEMPFGGGGV
Sbjct:    1 MQAKVTIMGPELEIVAIFVNPDIIEISRGRSFGSIGEQGRKLLEAVATEYASRMSVPGGARPKALKGIALARLRSALSAALHMAYSGRVITHMAESRGGGHMEEDVGEDPEMPFGGGGV 119
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BLAST of jgi.p|Trimin1|352916 vs. uniprot
Match: A0A836C6W3_9STRA (Lipoxygenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6W3_9STRA)

HSP 1 Score: 219 bits (558), Expect = 2.460e-63
Identity = 113/139 (81.29%), Postives = 118/139 (84.89%), Query Frame = 3 
Query:   42 MQAKITIMGPELEIVAIYVNPDIIKISRGSHWAPGADARKKGYITKQSIASDDGRDGGSPGPPYHPQQSIRKRLSPHTSRDTKQSCKTLSPQADPS*GHPAPRRLHLKVFMQAKVTIMGPELEIVAIFVNPDIIEISRG 458
            MQAK+TIMGPELEIVAIYVNPDIIKISRGSHWAPGADARKKGYITKQSIAS   R      PP  P ++      PHTSRDTKQSCKTL PQ DPS GHPAPRRLHLKVFMQAKVT+MGPELEIVAI+VNPDIIEISRG
Sbjct:    1 MQAKVTIMGPELEIVAIYVNPDIIKISRGSHWAPGADARKKGYITKQSIASLMSRTVVHRPPPITPNKASASDCPPHTSRDTKQSCKTLPPQTDPSKGHPAPRRLHLKVFMQAKVTMMGPELEIVAIYVNPDIIEISRG 139
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BLAST of jgi.p|Trimin1|352916 vs. uniprot
Match: A0A835Z453_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z453_9STRA)

HSP 1 Score: 188 bits (477), Expect = 2.830e-57
Identity = 100/134 (74.63%), Postives = 106/134 (79.10%), Query Frame = 3 
Query:   42 MQAKITIMGPELEIVAIYVNPDIIKISRGSHWAPGADARKKGYITKQSIASDDGRDGGSPGPPYH------PQQSIRKRLSPHTSRDTKQSCKTLSPQADPS*GHPAPRRLHLKVFMQAKVTIMGPELEIVAIF 425
            MQAK+TIMGP+LEIVAIYVNPDIIKISRGSHWAPGADARKKGYITKQSIAS         G   H      P ++      PHTSRDTKQSCKTL PQ DPS GHPAPRRLHLKVFMQAKVT+MGPELEIVAI+
Sbjct:    1 MQAKVTIMGPKLEIVAIYVNPDIIKISRGSHWAPGADARKKGYITKQSIASL------MSGTVVHRASHITPNKASASDCPPHTSRDTKQSCKTLPPQTDPSKGHPAPRRLHLKVFMQAKVTMMGPELEIVAIY 128
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BLAST of jgi.p|Trimin1|352916 vs. uniprot
Match: A0A836CIJ9_9STRA (Uncharacterized protein n=3 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIJ9_9STRA)

HSP 1 Score: 171 bits (433), Expect = 4.120e-51
Identity = 88/92 (95.65%), Postives = 90/92 (97.83%), Query Frame = 3 
Query:  453 RGRSFGSIGEQGRKLLEAVATEYASRMSVPGGARPKALKGIALARLRSALSAALHMAYSGRVITHMAESRGGGHMEEDVGEDPEMPFGGGGV 728
            + RSFGSIGEQGRKLLEAVATEYASRMSVPGGARPKALKGIALARLRS LSAALHMAYSGRV+THMAESRGGGHMEEDVGEDPEMPFGGGGV
Sbjct:   23 QARSFGSIGEQGRKLLEAVATEYASRMSVPGGARPKALKGIALARLRSELSAALHMAYSGRVMTHMAESRGGGHMEEDVGEDPEMPFGGGGV 114
[Close]
BLAST of jgi.p|Trimin1|352916 vs. uniprot
Match: A0A836CHB9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHB9_9STRA)

HSP 1 Score: 171 bits (433), Expect = 9.390e-51
Identity = 95/114 (83.33%), Postives = 100/114 (87.72%), Query Frame = 3 
Query:  390 IMGPELEIVAIFVNPDIIEISRGR-SFGSIGEQGRKLLEAVATEYASRMSVPGGARPKALKGIALARLRSALSAALHMAYSGRVITHMAESRGGGHMEEDVGEDPEMPFGGGGV 728
            ++G EL+IV         E +R   SFGSIGEQGRKLLEAVATEYASRMSVPGGARPKALKGIALARLRSALSAALHMAYSGRV+THMAESRGGGHMEEDVGEDPEMPFGGGGV
Sbjct:   35 LLGVELDIVN--------EHTRDTGSFGSIGEQGRKLLEAVATEYASRMSVPGGARPKALKGIALARLRSALSAALHMAYSGRVMTHMAESRGGGHMEEDVGEDPEMPFGGGGV 140
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BLAST of jgi.p|Trimin1|352916 vs. uniprot
Match: A0A835YPL5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPL5_9STRA)

HSP 1 Score: 169 bits (429), Expect = 1.180e-50
Identity = 89/101 (88.12%), Postives = 93/101 (92.08%), Query Frame = 3 
Query:  426 VNPDIIEISRGRSFGSIGEQGRKLLEAVATEYASRMSVPGGARPKALKGIALARLRSALSAALHMAYSGRVITHMAESRGGGHMEEDVGEDPEMPFGGGGV 728
            V+P     S  ++F SIGEQGRKLLEAVATEYASRMSVPGGARPKALKGIALARLRSALSAALHMAYSGRV+THMAESRGGGHMEEDVGEDPEMPFGGGGV
Sbjct:    3 VHPYDTSPSHPKTFNSIGEQGRKLLEAVATEYASRMSVPGGARPKALKGIALARLRSALSAALHMAYSGRVMTHMAESRGGGHMEEDVGEDPEMPFGGGGV 103
[Close]
BLAST of jgi.p|Trimin1|352916 vs. uniprot
Match: A0A836C8S9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8S9_9STRA)

HSP 1 Score: 166 bits (420), Expect = 5.940e-48
Identity = 85/90 (94.44%), Postives = 87/90 (96.67%), Query Frame = 3 
Query:  459 RSFGSIGEQGRKLLEAVATEYASRMSVPGGARPKALKGIALARLRSALSAALHMAYSGRVITHMAESRGGGHMEEDVGEDPEMPFGGGGV 728
            RSFGSIGEQGRKLLEAVATEYASRMSVPGGARPKALKGIALARLRSALSAALHMAYSGRV+THM ESRGGGH EEDVGEDPEMPF GGG+
Sbjct:  113 RSFGSIGEQGRKLLEAVATEYASRMSVPGGARPKALKGIALARLRSALSAALHMAYSGRVMTHMTESRGGGHTEEDVGEDPEMPFSGGGI 202
[Close]
BLAST of jgi.p|Trimin1|352916 vs. uniprot
Match: A0A835Z9T6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9T6_9STRA)

HSP 1 Score: 168 bits (426), Expect = 7.290e-48
Identity = 87/89 (97.75%), Postives = 88/89 (98.88%), Query Frame = 3 
Query:  462 SFGSIGEQGRKLLEAVATEYASRMSVPGGARPKALKGIALARLRSALSAALHMAYSGRVITHMAESRGGGHMEEDVGEDPEMPFGGGGV 728
            SFGSIGEQGRKLLEAVATEYASRMSVPGGARPKALKGIALARLRSALSAALHMAYSGRV+THMAESR GGHMEEDVGEDPEMPFGGGGV
Sbjct:  193 SFGSIGEQGRKLLEAVATEYASRMSVPGGARPKALKGIALARLRSALSAALHMAYSGRVMTHMAESRAGGHMEEDVGEDPEMPFGGGGV 281
[Close]
BLAST of jgi.p|Trimin1|352916 vs. uniprot
Match: A0A835YQS6_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQS6_9STRA)

HSP 1 Score: 164 bits (416), Expect = 9.500e-48
Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 3 
Query:  462 SFGSIGEQGRKLLEAVATEYASRMSVPGGARPKALKGIALARLRSALSAALHMAYSGRVITHMAESRGGGHMEEDVGEDPEMPFGGGG 725
            SFGSIGEQGRKLLEAVATEYASRMSVPGGARPKALKGIA ARLRSALSAALHMAYSGRV+THMAESRGGGHMEEDVGE+PEMPFGGGG
Sbjct:    3 SFGSIGEQGRKLLEAVATEYASRMSVPGGARPKALKGIAQARLRSALSAALHMAYSGRVMTHMAESRGGGHMEEDVGENPEMPFGGGG 90
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352916 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZIS8_9STRA5.680e-8483.55Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835ZJ73_9STRA1.190e-73100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836C6W3_9STRA2.460e-6381.29Lipoxygenase n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A835Z453_9STRA2.830e-5774.63Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CIJ9_9STRA4.120e-5195.65Uncharacterized protein n=3 Tax=Tribonema minus Ta... [more]
A0A836CHB9_9STRA9.390e-5183.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YPL5_9STRA1.180e-5088.12Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836C8S9_9STRA5.940e-4894.44Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z9T6_9STRA7.290e-4897.75Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YQS6_9STRA9.500e-4896.59Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_136contigContig_136:336673..338027 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352916|estExt_Genemark1.C_Ctg_1360027
Hectar predicted targeting categoryother localisation
TranscriptId353238
TrackFilteredModels1
ProteinId352916
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352916gene_16769Tribonema minus UTEX_B_3156 geneContig_136 336673..338027 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352916Trimin1|352916|estExt_Genemark1.C_Ctg_1360027Tribonema minus UTEX_B_3156 polypeptideContig_136 336673..337656 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16769_2exon_16769_2Tribonema minus UTEX_B_3156 exonContig_136 336673..336944 -
exon_16769_1exon_16769_1Tribonema minus UTEX_B_3156 exonContig_136 337569..338027 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16769CDS_16769Tribonema minus UTEX_B_3156 CDSContig_136 337569..337656 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_16769UTR5_16769Tribonema minus UTEX_B_3156 five_prime_UTRContig_136 337657..338027 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16769 ID=mRNA_16769|Name=jgi.p|Trimin1|352916|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=731bp|location=Sequence derived from alignment at Contig_136:336673..338027- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGGGCCACCCAGCTCCACGCAGACTCCATCTCAAAGTTTTCATGCAGGCC
AAGATCACCATAATGGGCCCTGAACTGGAGATTGTGGCTATCTACGTGAA
CCCCGATATCATAAAGATAAGCAGAGGGAGTCACTGGGCGCCAGGCGCTG
ACGCTAGAAAGAAAGGCTATATAACTAAGCAAAGCATTGCCTCCGATGAT
GGGCGAGACGGTGGTTCACCGGGCCCCCCATATCACCCCCAACAAAGCAT
CCGCAAGCGACTGTCCCCACACACTAGCAGGGATACCAAACAAAGCTGCA
AGACTCTCTCCCCACAGGCAGACCCGTCTTAGGGCCACCCAGCTCCACGC
AGACTCCATCTCAAAGTTTTCATGCAGGCCAAGGTCACCATAATGGGCCC
TGAACTGGAGATTGTGGCTATCTTCGTGAACCCCGACATCATAGAGATAA
GCAGAGGGAGGTCATTTGGCAGCATCGGGGAGCAGGGGCGGAAGCTGCTG
GAGGCTGTGGCGACGGAGTATGCCAGCAGGATGTCAGTGCCCGGAGGAGC
GCGCCCTAAAGCTCTCAAGGGCATCGCCCTGGCGCGCTTACGCTCGGCAC
TGTCGGCAGCGCTCCACATGGCGTACTCTGGCCGTGTCATAACACACATG
GCAGAATCCAGGGGGGGGGGGCACATGGAGGAGGACGTAGGGGAGGACCC
CGAGATGCCATTTGGCGGCGGCGGCGTTTGA
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protein sequence of jgi.p|Trimin1|352916

>Trimin1|352916|estExt_Genemark1.C_Ctg_1360027 ID=Trimin1|352916|estExt_Genemark1.C_Ctg_1360027|Name=jgi.p|Trimin1|352916|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=120bp
MQAKVTIMGPELEIVAIFVNPDIIEISRGRSFGSIGEQGRKLLEAVATEY
ASRMSVPGGARPKALKGIALARLRSALSAALHMAYSGRVITHMAESRGGG
HMEEDVGEDPEMPFGGGGV*
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mRNA from alignment at Contig_136:336673..338027-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16769 ID=mRNA_16769|Name=jgi.p|Trimin1|352916|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1355bp|location=Sequence derived from alignment at Contig_136:336673..338027- (Tribonema minus UTEX_B_3156 )
AGGGCCACCCAGCTCCACGCAGACTCCATCTCAAAGTTTTCATGCAGGCC
AAGATCACCATAATGGGCCCTGAACTGGAGATTGTGGCTATCTACGTGAA
CCCCGATATCATAAAGATAAGCAGAGGGAGTCACTGGGCGCCAGGCGCTG
ACGCTAGAAAGAAAGGCTATATAACTAAGCAAAGCATTGCCTCCGATGAT
GGGCGAGACGGTGGTTCACCGGGCCCCCCATATCACCCCCAACAAAGCAT
CCGCAAGCGACTGTCCCCACACACTAGCAGGGATACCAAACAAAGCTGCA
AGACTCTCTCCCCACAGGCAGACCCGTCTTAGGGCCACCCAGCTCCACGC
AGACTCCATCTCAAAGTTTTCATGCAGGCCAAGGTCACCATAATGGGCCC
TGAACTGGAGATTGTGGCTATCTTCGTGAACCCCGACATCATAGAGATAA
GCAGAGGGAGTCACTGGGCGCCAGGCGCTGACGCTAGAGAGAAAGGCTAT
ATAACTAAGTGAAGCATCGCCTCCTTGATGAGCGAGGTCACGGCTCACCG
CAGGCTGCAAGCCTGACAAGATATTGCCATTTACCGCTGCGAGTAACTTG
TGGTTGGTGCCGTGGCGTGCAGCCAACTCCGCTTGCTCTCCAAGCACGCC
AACCCGCTGCCTGTCCCTCCTCCGCACGCCAGCCAGGGCTTCCGAGACAC
CACCACACGTTTGAAGTGTTCTCGAAGGGGCTACGCACGCTGGCATCACC
TGAGGGCCGCTGGTGCTAGCTCCTGCAAGCCCTGCAGCCCAGCCCACCCA
CCACACCAGCCGCATTCGCTGCCACGCCTCTCGGCGTTAACGAGCGTTGT
ACGTATATGACATGTACTGCTAGTAGATTCCGTACAGCCTGTCTGATTGA
GCTAGATGCCAATCATCTTGGCTTTTTAGACTGTCATACGACATGTAGAT
TCCTTACAGCTAGATGCCAATCATCTGGGCTTTTTCGCGCCCTGAGCGAG
AATTAATAAAAAGTACGCCAAGACTACCCACTATTCTGGTCATTATGATC
AGAATTGCTACAAACTTGCCACATTGGCAATAGGGTCATTTGGCAGCATC
GGGGAGCAGGGGCGGAAGCTGCTGGAGGCTGTGGCGACGGAGTATGCCAG
CAGGATGTCAGTGCCCGGAGGAGCGCGCCCTAAAGCTCTCAAGGGCATCG
CCCTGGCGCGCTTACGCTCGGCACTGTCGGCAGCGCTCCACATGGCGTAC
TCTGGCCGTGTCATAACACACATGGCAGAATCCAGGGGGGGGGGGCACAT
GGAGGAGGACGTAGGGGAGGACCCCGAGATGCCATTTGGCGGCGGCGGCG
TTTGA
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Coding sequence (CDS) from alignment at Contig_136:336673..338027-

>mRNA_16769 ID=mRNA_16769|Name=jgi.p|Trimin1|352916|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=360bp|location=Sequence derived from alignment at Contig_136:336673..338027- (Tribonema minus UTEX_B_3156 )
ATGCAGGCCAAGGTCACCATAATGGGCCCTGAACTGGAGATTGTGGCTAT
CTTCGTGAACCCCGACATCATAGAGATAAGCAGAGGGAGGTCATTTGGCA
GCATCGGGGAGCAGGGGCGGAAGCTGCTGGAGGCTGTGGCGACGGAGTAT
GCCAGCAGGATGTCAGTGCCCGGAGGAGCGCGCCCTAAAGCTCTCAAGGG
CATCGCCCTGGCGCGCTTACGCTCGGCACTGTCGGCAGCGCTCCACATGG
CGTACTCTGGCCGTGTCATAACACACATGGCAGAATCCAGGGGGGGGGGG
CACATGGAGGAGGACGTAGGGGAGGACCCCGAGATGCCATTTGGCGGCGG
CGGCGTTTGA
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