mRNA_16658 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|180505
Unique NamemRNA_16658
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|180505 vs. uniprot
Match: A0A836CG81_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG81_9STRA)

HSP 1 Score: 208 bits (530), Expect = 2.520e-68
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1 
Query:    1 DATHFPAAGVTVSIHYVGRIQTAEKGLSEPFDSSRARGRPLLAKLGADQLIRAMEDVLPHMSVGQVVQVVAPPHYAYGRAGWPPIIPPNATLVFELELVSFM 306
            DATHFPAAGVTVSIHYVGRIQTAEKGLSEPFDSSRARGRPLLAKLGADQLIRAMEDVLPHMSVGQVVQVVAPPHYAYGRAGWPPIIPPNATLVFELELVSFM
Sbjct:    1 DATHFPAAGVTVSIHYVGRIQTAEKGLSEPFDSSRARGRPLLAKLGADQLIRAMEDVLPHMSVGQVVQVVAPPHYAYGRAGWPPIIPPNATLVFELELVSFM 102
[Close]
BLAST of jgi.p|Trimin1|180505 vs. uniprot
Match: D7FZ00_ECTSI (Peptidylprolyl isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ00_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 6.500e-32
Identity = 56/101 (55.45%), Postives = 70/101 (69.31%), Query Frame = 1 
Query:    1 DATHFPAAGVTVSIHYVGRIQTAEKGLSEPFDSSRARGRPLLAKLGADQLIRAMEDVLPHMSVGQVVQVVAPPHYAYGRAGWPPIIPPNATLVFELELVSF 303
            DATHFP  G TVS+HYVG+++T        FDSS AR  PL  K+G  QLIR  E+VLP MSV Q +++  PP Y YG  G+PPI+P NATL++ELEL+ F
Sbjct:   25 DATHFPGKGYTVSVHYVGKLETDHS----VFDSSHARHAPLQCKIGLGQLIRGWEEVLPKMSVHQKIRLTVPPDYGYGMNGYPPIVPANATLIYELELLGF 121
[Close]
BLAST of jgi.p|Trimin1|180505 vs. uniprot
Match: K3WDT7_GLOUD (Peptidylprolyl isomerase n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WDT7_GLOUD)

HSP 1 Score: 109 bits (272), Expect = 6.350e-29
Identity = 53/101 (52.48%), Postives = 68/101 (67.33%), Query Frame = 1 
Query:    1 DATHFPAAGVTVSIHYVGRIQTAEKGLSEPFDSSRARGRPLLAKLGADQLIRAMEDVLPHMSVGQVVQVVAPPHYAYGRAGWPPIIPPNATLVFELELVSF 303
            D T+FP AG TV +HYVG +    K     FDSSR RGRP   KLGA Q+IR  ++ +  MS+GQ+ ++  P  YAYG  G+PPIIPP ATL+FE+EL+ F
Sbjct:   12 DGTNFPKAGNTVKVHYVGTLTNGSK-----FDSSRDRGRPFEFKLGAGQVIRGWDEGVAKMSLGQIAKLTLPHEYAYGEHGYPPIIPPKATLIFEVELLGF 107
[Close]
BLAST of jgi.p|Trimin1|180505 vs. uniprot
Match: W2JKM9_PHYPR (Peptidylprolyl isomerase n=9 Tax=Phytophthora TaxID=4783 RepID=W2JKM9_PHYPR)

HSP 1 Score: 108 bits (270), Expect = 1.280e-28
Identity = 53/101 (52.48%), Postives = 68/101 (67.33%), Query Frame = 1 
Query:    1 DATHFPAAGVTVSIHYVGRIQTAEKGLSEPFDSSRARGRPLLAKLGADQLIRAMEDVLPHMSVGQVVQVVAPPHYAYGRAGWPPIIPPNATLVFELELVSF 303
            D T+FP  G TVS+HYVG +    K     FDSSR RGRP   +LGA Q+IR  ++ +  MS GQV ++  P  YAYG  G+PP+IPP ATL+FE+EL+SF
Sbjct:   12 DGTNFPKPGQTVSVHYVGTLTDGSK-----FDSSRDRGRPFQFQLGAGQVIRGWDEGVAKMSKGQVAKLTLPHEYAYGERGYPPVIPPKATLIFEVELLSF 107
[Close]
BLAST of jgi.p|Trimin1|180505 vs. uniprot
Match: A0A8D3CE70_SCOMX (Peptidylprolyl isomerase n=1 Tax=Scophthalmus maximus TaxID=52904 RepID=A0A8D3CE70_SCOMX)

HSP 1 Score: 106 bits (265), Expect = 7.360e-28
Identity = 51/99 (51.52%), Postives = 67/99 (67.68%), Query Frame = 1 
Query:    1 DATHFPAAGVTVSIHYVGRIQTAEKGLSEPFDSSRARGRPLLAKLGADQLIRAMEDVLPHMSVGQVVQVVAPPHYAYGRAGWPPIIPPNATLVFELELV 297
            D   FP  G  V +HYVGR+   EK     FDSSR RG+P   K+G +Q+IR  ++ +  MSVGQV ++   P YAYG +G+PP+IPPNATLVFE+EL+
Sbjct:   12 DGRSFPQKGCDVQVHYVGRLTNGEK-----FDSSRDRGKPFNFKIGQNQVIRGWDEGVAQMSVGQVARLTCTPDYAYGASGYPPVIPPNATLVFEVELL 105
[Close]
BLAST of jgi.p|Trimin1|180505 vs. uniprot
Match: A0A7S3K4C4_9STRA (Peptidylprolyl isomerase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K4C4_9STRA)

HSP 1 Score: 107 bits (267), Expect = 1.050e-27
Identity = 51/101 (50.50%), Postives = 68/101 (67.33%), Query Frame = 1 
Query:    1 DATHFPAAGVTVSIHYVGRIQTAEKGLSEPFDSSRARGRPLLAKLGADQLIRAMEDVLPHMSVGQVVQVVAPPHYAYGRAGWPPIIPPNATLVFELELVSF 303
            DATH+P    T  IHYVG++          FDSSRAR RPLL +LG +QLI  +E  +  MS+GQ+ Q++ PPH AYG  G+ P+IPPN TL +E+EL++F
Sbjct:   24 DATHYPRPPATCRIHYVGKLPDGTI-----FDSSRARSRPLLFRLGNEQLIPGLEHGIQMMSIGQISQMILPPHLAYGSTGYLPVIPPNCTLTYEVELIAF 119
[Close]
BLAST of jgi.p|Trimin1|180505 vs. uniprot
Match: H3G8A5_PHYRM (Peptidylprolyl isomerase n=13 Tax=Peronosporaceae TaxID=4777 RepID=H3G8A5_PHYRM)

HSP 1 Score: 105 bits (262), Expect = 2.100e-27
Identity = 52/101 (51.49%), Postives = 66/101 (65.35%), Query Frame = 1 
Query:    1 DATHFPAAGVTVSIHYVGRIQTAEKGLSEPFDSSRARGRPLLAKLGADQLIRAMEDVLPHMSVGQVVQVVAPPHYAYGRAGWPPIIPPNATLVFELELVSF 303
            D   FP  G TVS+HYVG +    K     FDSSR RGRP   +LGA Q+IR  ++ +  MS GQV ++  P  YAYG  G+PP+IPP ATL+FE+EL+SF
Sbjct:   12 DGVSFPKPGQTVSVHYVGTLTDGSK-----FDSSRDRGRPFQFELGAGQVIRGWDEGVAKMSKGQVAKLTLPHDYAYGERGYPPVIPPRATLIFEVELLSF 107
[Close]
BLAST of jgi.p|Trimin1|180505 vs. uniprot
Match: M4BZY2_HYAAE (Peptidylprolyl isomerase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BZY2_HYAAE)

HSP 1 Score: 105 bits (261), Expect = 2.980e-27
Identity = 51/101 (50.50%), Postives = 66/101 (65.35%), Query Frame = 1 
Query:    1 DATHFPAAGVTVSIHYVGRIQTAEKGLSEPFDSSRARGRPLLAKLGADQLIRAMEDVLPHMSVGQVVQVVAPPHYAYGRAGWPPIIPPNATLVFELELVSF 303
            D   FP  G TVS+HYVG +    K     FDSSR RGRP   KLGA Q+IR  ++ +  MS GQ+ ++     YAYG +G+PP+IPP ATL+FE+EL+SF
Sbjct:   12 DGVSFPQQGQTVSVHYVGTLTNGVK-----FDSSRDRGRPFQFKLGAGQVIRGWDEGVAKMSTGQIAKLTLSHEYAYGESGYPPVIPPKATLIFEVELLSF 107
[Close]
BLAST of jgi.p|Trimin1|180505 vs. uniprot
Match: A0A6V1KFW8_HETAK (Peptidylprolyl isomerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1KFW8_HETAK)

HSP 1 Score: 104 bits (259), Expect = 6.010e-27
Identity = 50/101 (49.50%), Postives = 68/101 (67.33%), Query Frame = 1 
Query:    1 DATHFPAAGVTVSIHYVGRIQTAEKGLSEPFDSSRARGRPLLAKLGADQLIRAMEDVLPHMSVGQVVQVVAPPHYAYGRAGWPPIIPPNATLVFELELVSF 303
            DAT+FP  G TV +HYVG +    +     FDSSR+RGRP   +LG   +IRA ++ +  MS GQV ++   P YAYG  G+PP+IPPN+TL+FE+EL+ F
Sbjct:   12 DATNFPQQGNTVRVHYVGTLTDGTE-----FDSSRSRGRPFEFQLGMGMVIRAWDEGVAQMSKGQVAKLTCSPDYAYGARGYPPVIPPNSTLIFEVELLDF 107
[Close]
BLAST of jgi.p|Trimin1|180505 vs. uniprot
Match: A0A8K1CD50_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CD50_PYTOL)

HSP 1 Score: 104 bits (259), Expect = 6.180e-27
Identity = 52/101 (51.49%), Postives = 66/101 (65.35%), Query Frame = 1 
Query:    1 DATHFPAAGVTVSIHYVGRIQTAEKGLSEPFDSSRARGRPLLAKLGADQLIRAMEDVLPHMSVGQVVQVVAPPHYAYGRAGWPPIIPPNATLVFELELVSF 303
            D  +FP  G TV +HYVG +    K     FDSSR RGRP   KLGA Q+IR  ++ +  +S GQV ++  P  YAYG  G+PPIIPP ATL+FE+EL+SF
Sbjct:   13 DGVNFPKPGNTVRVHYVGTLTNGNK-----FDSSRDRGRPFEFKLGAGQVIRGWDEGVALLSKGQVAKLTLPFEYAYGEQGYPPIIPPRATLIFEVELISF 108
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|180505 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CG81_9STRA2.520e-68100.00Peptidylprolyl isomerase n=1 Tax=Tribonema minus T... [more]
D7FZ00_ECTSI6.500e-3255.45Peptidylprolyl isomerase n=1 Tax=Ectocarpus silicu... [more]
K3WDT7_GLOUD6.350e-2952.48Peptidylprolyl isomerase n=2 Tax=Pythiaceae TaxID=... [more]
W2JKM9_PHYPR1.280e-2852.48Peptidylprolyl isomerase n=9 Tax=Phytophthora TaxI... [more]
A0A8D3CE70_SCOMX7.360e-2851.52Peptidylprolyl isomerase n=1 Tax=Scophthalmus maxi... [more]
A0A7S3K4C4_9STRA1.050e-2750.50Peptidylprolyl isomerase n=1 Tax=Aureoumbra lagune... [more]
H3G8A5_PHYRM2.100e-2751.49Peptidylprolyl isomerase n=13 Tax=Peronosporaceae ... [more]
M4BZY2_HYAAE2.980e-2750.50Peptidylprolyl isomerase n=1 Tax=Hyaloperonospora ... [more]
A0A6V1KFW8_HETAK6.010e-2749.50Peptidylprolyl isomerase n=1 Tax=Heterosigma akash... [more]
A0A8K1CD50_PYTOL6.180e-2751.49Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_219contigContig_219:52311..52619 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|180505|e_gw1.219.46.1
BRITEko00000,ko01000,ko03110
KEGG koko:K09568
EC5.2.1.8
DescriptionPeptidyl-prolyl cis-trans isomerase
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0545@1|root,KOG0544@2759|Eukaryota
Evalue1.07e-32
Seed ortholog2880.D7FZ00
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFKBP domain protein
Ec32 orthologEc-06_002180.1
TranscriptId180827
TrackFilteredModels1
ProteinId180505
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|180505gene_16658Tribonema minus UTEX_B_3156 geneContig_219 52311..52619 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16658_1exon_16658_1Tribonema minus UTEX_B_3156 exonContig_219 52311..52619 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16658CDS_16658Tribonema minus UTEX_B_3156 CDSContig_219 52311..52619 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|180505Trimin1|180505|e_gw1.219.46.1Tribonema minus UTEX_B_3156 polypeptideContig_219 52311..52619 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16658 ID=mRNA_16658|Name=jgi.p|Trimin1|180505|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=309bp|location=Sequence derived from alignment at Contig_219:52311..52619- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GATGCCACCCACTTCCCCGCTGCAGGAGTCACTGTTAGCATTCATTACGT
TGGGCGAATTCAGACTGCAGAGAAAGGGCTGAGCGAGCCTTTTGACTCCA
GCAGAGCAAGAGGGCGGCCACTGCTGGCGAAACTTGGTGCAGACCAGCTG
ATTCGAGCCATGGAGGATGTGCTACCCCACATGAGTGTAGGGCAAGTGGT
GCAGGTAGTGGCACCGCCGCATTATGCCTACGGCCGGGCAGGATGGCCAC
CCATCATACCACCAAATGCCACCCTGGTATTTGAATTAGAGCTGGTCAGC
TTCATGTGA
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protein sequence of jgi.p|Trimin1|180505

>Trimin1|180505|e_gw1.219.46.1 ID=Trimin1|180505|e_gw1.219.46.1|Name=jgi.p|Trimin1|180505|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=103bp
DATHFPAAGVTVSIHYVGRIQTAEKGLSEPFDSSRARGRPLLAKLGADQL
IRAMEDVLPHMSVGQVVQVVAPPHYAYGRAGWPPIIPPNATLVFELELVS
FM*
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mRNA from alignment at Contig_219:52311..52619-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16658 ID=mRNA_16658|Name=jgi.p|Trimin1|180505|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=309bp|location=Sequence derived from alignment at Contig_219:52311..52619- (Tribonema minus UTEX_B_3156 )
GATGCCACCCACTTCCCCGCTGCAGGAGTCACTGTTAGCATTCATTACGT
TGGGCGAATTCAGACTGCAGAGAAAGGGCTGAGCGAGCCTTTTGACTCCA
GCAGAGCAAGAGGGCGGCCACTGCTGGCGAAACTTGGTGCAGACCAGCTG
ATTCGAGCCATGGAGGATGTGCTACCCCACATGAGTGTAGGGCAAGTGGT
GCAGGTAGTGGCACCGCCGCATTATGCCTACGGCCGGGCAGGATGGCCAC
CCATCATACCACCAAATGCCACCCTGGTATTTGAATTAGAGCTGGTCAGC
TTCATGTGA
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Coding sequence (CDS) from alignment at Contig_219:52311..52619-

>mRNA_16658 ID=mRNA_16658|Name=jgi.p|Trimin1|180505|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=309bp|location=Sequence derived from alignment at Contig_219:52311..52619- (Tribonema minus UTEX_B_3156 )
GATGCCACCCACTTCCCCGCTGCAGGAGTCACTGTTAGCATTCATTACGT
TGGGCGAATTCAGACTGCAGAGAAAGGGCTGAGCGAGCCTTTTGACTCCA
GCAGAGCAAGAGGGCGGCCACTGCTGGCGAAACTTGGTGCAGACCAGCTG
ATTCGAGCCATGGAGGATGTGCTACCCCACATGAGTGTAGGGCAAGTGGT
GCAGGTAGTGGCACCGCCGCATTATGCCTACGGCCGGGCAGGATGGCCAC
CCATCATACCACCAAATGCCACCCTGGTATTTGAATTAGAGCTGGTCAGC
TTCATGTGA
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