mRNA_16627 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|177289
Unique NamemRNA_16627
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|177289 vs. uniprot
Match: A0A835ZHT5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHT5_9STRA)

HSP 1 Score: 318 bits (816), Expect = 3.330e-110
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 1 
Query:    1 QAGLQSKHPRHIYANPLAPEICPILSLGIFWMSYGLNSDISMRLFTGRHQYDRHVYSKVLKRVVQSQAGNVRLLGGKPDEIGAHSSRKGAASWVSSGSSACPSSTAVSLRAGWVQPGVEDTYKRFEAAGDQYLGRCCAGETSITHQHIEDFNLNRV 468
            QAGLQSKHPRHIYANPLAPEICPILSLGIFWMSYGLNSDISMRLFTGRHQYDRHVYSKVLKRVVQSQAGNVRLLGGKPDEIGAHSSRKGAASWVSSGSSACPSSTAVSLRAGWVQPGVEDTYKRFEAAGDQYLGRCCAGETSITHQHIEDFNLNRV
Sbjct:    1 QAGLQSKHPRHIYANPLAPEICPILSLGIFWMSYGLNSDISMRLFTGRHQYDRHVYSKVLKRVVQSQAGNVRLLGGKPDEIGAHSSRKGAASWVSSGSSACPSSTAVSLRAGWVQPGVEDTYKRFEAAGDQYLGRCCAGETSITHQHIEDFNLNRV 156
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BLAST of jgi.p|Trimin1|177289 vs. uniprot
Match: G4Z7S3_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z7S3_PHYSP)

HSP 1 Score: 135 bits (340), Expect = 2.390e-37
Identity = 72/148 (48.65%), Postives = 102/148 (68.92%), Query Frame = 1 
Query:    1 QAGLQSKHPRHIYANPLAPEICPILSLGIFWMSYGLNSDISMRLFTGRHQYDRHVYSKVLKRVVQSQ--AGNVRLLGGKPDEIGAHSSRKGAASWVSSGSSACPSSTAVSLRAGWVQPGVEDTYKRFEAAGDQYLGRCCAGETSITHQ 438
            Q+G + + PRH+YANPL P ICP+L+L I+W +   ++D   RLF G  QYDR  + K L+R++  +  A  ++  G   +++G H  RKGAA++ +SGS+ACPSSTAV LRAGW   GV++TY R+EAAGD Y+GR  AG  S +H+
Sbjct:    5 QSGDRPRDPRHVYANPLQPSICPVLALAIYWATTSFDTD--NRLFPGSDQYDR--FRKCLQRLLVDEKVAAELKRRGVNSNDLGTHLMRKGAATYCASGSTACPSSTAVHLRAGWSLGGVQNTYLRYEAAGDMYVGRTVAGLPSGSHE 148
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BLAST of jgi.p|Trimin1|177289 vs. uniprot
Match: A0A836CJM8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJM8_9STRA)

HSP 1 Score: 144 bits (364), Expect = 3.310e-37
Identity = 80/132 (60.61%), Postives = 94/132 (71.21%), Query Frame = 1 
Query:   28 RHIYANPLAPEICPILSLGIFWMSYGLN--SDISMRLFTGRHQYDRHVYSKVLKRVVQSQAGNVRLLGGKPDEIGAHSSRKGAASWVSSGSSACPSSTAVSLRAGWVQPGVEDTYKRFEAAGDQYLGRCCAG 417
            RH+YANPL PEICPILSLG+F M YG+    D   RLFTG  QYDR  Y+KVLKRV + +A  +R  G  PD++GA SSR GAAS+  S S+ACPSS AV LRAGWV  GV D  KR+  A ++Y GRCCAG
Sbjct:  276 RHVYANPLNPEICPILSLGVFMMCYGVGVGGDGDGRLFTGTKQYDR--YTKVLKRVAERRAEQLRQHGLTPDDLGALSSRGGAASYSLSDSTACPSSAAVGLRAGWVPSGVGDADKRYVPAEERYAGRCCAG 405
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BLAST of jgi.p|Trimin1|177289 vs. uniprot
Match: A0A0W8BRS2_PHYNI (Uncharacterized protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8BRS2_PHYNI)

HSP 1 Score: 137 bits (346), Expect = 4.130e-36
Identity = 82/158 (51.90%), Postives = 103/158 (65.19%), Query Frame = 1 
Query:    1 QAGLQSKHPRHIYANPLAPEICPILSLGIFWMSYGLNSDISMRLFTGRHQYDRHVYSKVLKRVVQSQ--AGNVRLLGGKPDEIGAHSSRKGAASWVSSGSSACPSSTAVSLRAGWVQPGVEDTYKRFEAAGDQYLGRCCAG------ETSITHQHIED 450
            Q G + + PRHIYANPL PEICPIL+LGIFW       D +  LF G +QY+R  + K L+R++  Q  A  +   G K  E+G HS RKGAA++ SSGS+ACPSSTAV LRAGW   GV++TY R+EAAGD ++GR  AG      + SI   H ED
Sbjct:  153 QGGDRPRDPRHIYANPLRPEICPILALGIFWACNDF--DGTDLLFPGNNQYER--FRKSLQRILTQQDVAAELCRQGLKATELGTHSMRKGAATFCSSGSTACPSSTAVHLRAGWSLGGVQNTYLRYEAAGDMHVGRTVAGLPTESSQFSILAPHFED 306
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BLAST of jgi.p|Trimin1|177289 vs. uniprot
Match: V9DZF4_PHYPR (Uncharacterized protein n=5 Tax=Phytophthora parasitica TaxID=4792 RepID=V9DZF4_PHYPR)

HSP 1 Score: 130 bits (327), Expect = 1.010e-35
Identity = 70/141 (49.65%), Postives = 96/141 (68.09%), Query Frame = 1 
Query:    1 QAGLQSKHPRHIYANPLAPEICPILSLGIFWMSYGLNSDISMRLFTGRHQYDRHVYSKVLKRVVQSQAGNVRLL--GGKPDEIGAHSSRKGAASWVSSGSSACPSSTAVSLRAGWVQPGVEDTYKRFEAAGDQYLGRCCAG 417
            Q   + + PRH+YANPL P +CPIL+L I+W +     D+  RLF G  QYDR  + K L R+++ +  +V L   G  P ++G HS RKGAA++ +SGS+ACPSSTAV L+AGW   GV++TY R+EAAGD ++GR  AG
Sbjct:    5 QGNDRPRDPRHVYANPLQPSVCPILALAIYWATSTF--DVDNRLFPGSDQYDR--FRKRLYRLLEDEMVSVELKRRGVNPSDLGTHSMRKGAATYCASGSTACPSSTAVHLQAGWSLGGVQNTYLRYEAAGDMHVGRTVAG 141
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BLAST of jgi.p|Trimin1|177289 vs. uniprot
Match: W2QUJ4_PHYPN (Uncharacterized protein n=3 Tax=Phytophthora parasitica TaxID=4792 RepID=W2QUJ4_PHYPN)

HSP 1 Score: 138 bits (347), Expect = 2.850e-35
Identity = 70/141 (49.65%), Postives = 101/141 (71.63%), Query Frame = 1 
Query:    1 QAGLQSKHPRHIYANPLAPEICPILSLGIFWMSYGLNSDISMRLFTGRHQYDRHVYSKVLKRVVQSQ--AGNVRLLGGKPDEIGAHSSRKGAASWVSSGSSACPSSTAVSLRAGWVQPGVEDTYKRFEAAGDQYLGRCCAG 417
            Q G + + PRHIYANPL PE+CPIL+LG++WM YG++S+ + ++F G  QYDR  + K L+R +++   A  +  +G + D+IG HS RKGAA++ SSGS+ACP + AV LRAGW   GV+D Y R ++AGD ++GR  +G
Sbjct:  198 QRGTRPRDPRHIYANPLMPEVCPILALGLYWMVYGVDSNAN-QVFPGNDQYDR--FRKTLRRALETPGLANELERVGVRCDDIGTHSMRKGAATYCSSGSTACPPAIAVHLRAGWALGGVQDRYLRHDSAGDMFVGRTVSG 335
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BLAST of jgi.p|Trimin1|177289 vs. uniprot
Match: W2PW09_PHYPN (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=W2PW09_PHYPN)

HSP 1 Score: 133 bits (334), Expect = 3.400e-35
Identity = 69/141 (48.94%), Postives = 99/141 (70.21%), Query Frame = 1 
Query:    1 QAGLQSKHPRHIYANPLAPEICPILSLGIFWMSYGLNSDISMRLFTGRHQYDRHVYSKVLKRVVQSQAGNVRL--LGGKPDEIGAHSSRKGAASWVSSGSSACPSSTAVSLRAGWVQPGVEDTYKRFEAAGDQYLGRCCAG 417
            Q G + + PRHIYANP  PE+CPIL++G++WM YG++S+++ ++F G  QYDR  + K L+RV +S      L  +G + D+IG HS RKG+A++ SSGS+ACP + AV LRAGW   GV+D Y R ++AGD  +GR  +G
Sbjct:   57 QRGTRPRDPRHIYANPPMPEVCPILAIGLYWMVYGVDSNVN-QVFPGNDQYDR--FRKTLRRVSESPGVKNELDRVGVRCDDIGTHSMRKGSATYCSSGSTACPPAIAVHLRAGWALGGVQDRYLRHDSAGDMLVGRTVSG 194
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BLAST of jgi.p|Trimin1|177289 vs. uniprot
Match: W2QWQ7_PHYPN (Uncharacterized protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2QWQ7_PHYPN)

HSP 1 Score: 136 bits (343), Expect = 3.800e-35
Identity = 70/141 (49.65%), Postives = 97/141 (68.79%), Query Frame = 1 
Query:    1 QAGLQSKHPRHIYANPLAPEICPILSLGIFWMSYGLNSDISMRLFTGRHQYDRHVYSKVLKRVVQS--QAGNVRLLGGKPDEIGAHSSRKGAASWVSSGSSACPSSTAVSLRAGWVQPGVEDTYKRFEAAGDQYLGRCCAG 417
            Q G + + PRHIYANPL P ICPIL++G++W+ YG+ +  +  +F G  QYDR  + K L+RV++S   AG +   G   D+IG HS RKGAA++ SSGS+ACP + AV LRAGW   GV+D Y R ++AGD ++GR  +G
Sbjct:  104 QRGTRPRDPRHIYANPLMPAICPILAIGLYWLVYGIETSAT-HVFPGNDQYDR--FRKALRRVLESTGMAGELERCGTNCDDIGTHSMRKGAATYCSSGSTACPPAIAVHLRAGWALGGVQDRYLRHDSAGDMFVGRTVSG 241
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BLAST of jgi.p|Trimin1|177289 vs. uniprot
Match: W2Y819_PHYPR (Uncharacterized protein n=4 Tax=Phytophthora parasitica TaxID=4792 RepID=W2Y819_PHYPR)

HSP 1 Score: 137 bits (346), Expect = 3.810e-35
Identity = 70/141 (49.65%), Postives = 101/141 (71.63%), Query Frame = 1 
Query:    1 QAGLQSKHPRHIYANPLAPEICPILSLGIFWMSYGLNSDISMRLFTGRHQYDRHVYSKVLKRVVQSQ--AGNVRLLGGKPDEIGAHSSRKGAASWVSSGSSACPSSTAVSLRAGWVQPGVEDTYKRFEAAGDQYLGRCCAG 417
            Q G + + PRHIYANPL PE+CPIL+LG++WM YG++S+ + ++F G  QYDR  + K L+R +++   A  +  +G + D+IG HS RKGAA++ SSGS+ACP + AV LRAGW   GV+D Y R ++AGD ++GR  +G
Sbjct:  104 QRGTRPQDPRHIYANPLMPEVCPILALGLYWMVYGVDSNAN-QVFPGNDQYDR--FRKTLRRALETPGLANELERVGVRCDDIGTHSMRKGAATYCSSGSTACPPAIAVHLRAGWALGGVQDRYLRHDSAGDMFVGRTISG 241
[Close]
BLAST of jgi.p|Trimin1|177289 vs. uniprot
Match: W2IGK6_PHYPR (Uncharacterized protein n=1 Tax=Phytophthora parasitica TaxID=4792 RepID=W2IGK6_PHYPR)

HSP 1 Score: 130 bits (326), Expect = 7.460e-35
Identity = 76/172 (44.19%), Postives = 106/172 (61.63%), Query Frame = 1 
Query:    1 QAGLQSKHPRHIYANPLAPEICPILSLGIFWMSYGLNSDISMRLFTGRHQYDRHVYSKVLKRVVQSQ--AGNVRLLGGKPDEIGA-HSSRKGAASWVSSGSSACPSSTAVSLRAGWVQPGVEDTYKRFEAAGDQYLGRCCAGETSITH-------------QHIEDFNLNRV 468
            QAG + + P+H+YANPL P ICPIL+LG++W  +  +   + R F G  QYDR  + K L R+      +  ++    KPDEIG+ HS RKGAA++ SSGS+ACPSST V+LRAGW   GV++TY R+EAAGD ++GR   G  + +H               +E  N++RV
Sbjct:    5 QAGDRPRDPQHVYANPLEPTICPILALGVYWSMFTFDQ-ANGRFFLGGSQYDR--FCKQLGRIFNQDDVSNELKRRAVKPDEIGSTHSLRKGAATFASSGSTACPSSTTVNLRAGWSLGGVQNTYLRYEAAGDMHVGRTVTGLPTDSHTFACLPPHFCSCDDQVEKGNIHRV 173
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|177289 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZHT5_9STRA3.330e-110100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
G4Z7S3_PHYSP2.390e-3748.65Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A836CJM8_9STRA3.310e-3760.61Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0W8BRS2_PHYNI4.130e-3651.90Uncharacterized protein n=1 Tax=Phytophthora nicot... [more]
V9DZF4_PHYPR1.010e-3549.65Uncharacterized protein n=5 Tax=Phytophthora paras... [more]
W2QUJ4_PHYPN2.850e-3549.65Uncharacterized protein n=3 Tax=Phytophthora paras... [more]
W2PW09_PHYPN3.400e-3548.94Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
W2QWQ7_PHYPN3.800e-3549.65Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
W2Y819_PHYPR3.810e-3549.65Uncharacterized protein n=4 Tax=Phytophthora paras... [more]
W2IGK6_PHYPR7.460e-3544.19Uncharacterized protein n=1 Tax=Phytophthora paras... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_149contigContig_149:123036..123948 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|177289|e_gw1.149.34.1
Max annot lvl42099.EPrPV00000024139|-
EggNOG OGs2990X@1|root,2RG2A@2759|Eukaryota,1MK3J@121069|Pythiales
Evalue3.53e-32
Seed ortholog42099.EPrPV00000024139
Hectar predicted targeting categoryother localisation
TranscriptId177611
TrackFilteredModels1
ProteinId177289
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177289gene_16627Tribonema minus UTEX_B_3156 geneContig_149 123036..123948 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16627_1exon_16627_1Tribonema minus UTEX_B_3156 exonContig_149 123036..123199 +
exon_16627_2exon_16627_2Tribonema minus UTEX_B_3156 exonContig_149 123642..123948 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16627CDS_16627Tribonema minus UTEX_B_3156 CDSContig_149 123036..123199 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177289Trimin1|177289|e_gw1.149.34.1Tribonema minus UTEX_B_3156 polypeptideContig_149 123036..123948 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16627 ID=mRNA_16627|Name=jgi.p|Trimin1|177289|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=471bp|location=Sequence derived from alignment at Contig_149:123036..123948+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGGCTGGCCTGCAATCCAAGCATCCACGGCACATATATGCCAATCCGCT
TGCGCCGGAGATCTGCCCCATACTTTCCTTGGGCATCTTCTGGATGAGCT
ACGGGCTGAACTCGGACATCAGCATGCGCCTTTTCACAGGCAGGCACCAG
TACGACAGGCATGTGTACTCAAAGGTGCTGAAGCGTGTGGTGCAAAGCCA
AGCGGGGAATGTGAGGCTGCTAGGCGGGAAACCTGATGAGATTGGAGCAC
ACTCGTCGCGCAAGGGCGCTGCCTCCTGGGTTTCATCGGGATCATCTGCT
TGCCCATCGAGTACTGCTGTCAGCCTGCGAGCAGGATGGGTGCAACCTGG
CGTGGAGGACACGTACAAGCGCTTTGAGGCTGCTGGGGATCAATATTTGG
GGAGATGCTGTGCAGGTGAGACTTCAATAACACATCAACATATTGAGGAT
TTTAATCTGAATCGTGTCTGA
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protein sequence of jgi.p|Trimin1|177289

>Trimin1|177289|e_gw1.149.34.1 ID=Trimin1|177289|e_gw1.149.34.1|Name=jgi.p|Trimin1|177289|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=157bp
QAGLQSKHPRHIYANPLAPEICPILSLGIFWMSYGLNSDISMRLFTGRHQ
YDRHVYSKVLKRVVQSQAGNVRLLGGKPDEIGAHSSRKGAASWVSSGSSA
CPSSTAVSLRAGWVQPGVEDTYKRFEAAGDQYLGRCCAGETSITHQHIED
FNLNRV*
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mRNA from alignment at Contig_149:123036..123948+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16627 ID=mRNA_16627|Name=jgi.p|Trimin1|177289|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=913bp|location=Sequence derived from alignment at Contig_149:123036..123948+ (Tribonema minus UTEX_B_3156 )
CAGGCTGGCCTGCAATCCAAGCATCCACGGCACATATATGCCAATCCGCT
TGCGCCGGAGATCTGCCCCATACTTTCCTTGGGCATCTTCTGGATGAGCT
ACGGGCTGAACTCGGACATCAGCATGCGCCTTTTCACAGGCAGGCACCAG
TACGACAGGCATGTGTCAGTTGCATCTTGTGCTTTTGTTGCTCAACACAC
ACCGAATCAACACTTCATCAATTCCTAGTGAATTGTTATTTGTTGCATAA
GTGTACTCTCATATTGTGTATTGCCACAAGGGGGGTAATGACACTGACTC
AGATGCTCGTGCGACAGCTTGCGGCAGCTTGCGGCAGCTTTGCAACCAAC
ATAAGCATTGCGTGCATACCACCGTTGTCGCTGACATCAACATGCTTGGC
TGCGCTTGATCATTTGCACCAGTGTTTGCCTGCCTACAAATCCATCAGTC
TTAGTCCATCAGTCTTATGCACATGGGTATACCTTTCATGATTTTTGCAT
GTACTTTTGCATGTATTTTTATTGCATGCCATTATTTGTAATTTGAAAGT
CTCTCAGCAGGTGGACTTTCGCAATGCTGATTCTATACTTGCGCACTGCA
GTGCAGGTACTCAAAGGTGCTGAAGCGTGTGGTGCAAAGCCAAGCGGGGA
ATGTGAGGCTGCTAGGCGGGAAACCTGATGAGATTGGAGCACACTCGTCG
CGCAAGGGCGCTGCCTCCTGGGTTTCATCGGGATCATCTGCTTGCCCATC
GAGTACTGCTGTCAGCCTGCGAGCAGGATGGGTGCAACCTGGCGTGGAGG
ACACGTACAAGCGCTTTGAGGCTGCTGGGGATCAATATTTGGGGAGATGC
TGTGCAGGTGAGACTTCAATAACACATCAACATATTGAGGATTTTAATCT
GAATCGTGTCTGA
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Coding sequence (CDS) from alignment at Contig_149:123036..123948+

>mRNA_16627 ID=mRNA_16627|Name=jgi.p|Trimin1|177289|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=471bp|location=Sequence derived from alignment at Contig_149:123036..123948+ (Tribonema minus UTEX_B_3156 )
CAGGCTGGCCTGCAATCCAAGCATCCACGGCACATATATGCCAATCCGCT
TGCGCCGGAGATCTGCCCCATACTTTCCTTGGGCATCTTCTGGATGAGCT
ACGGGCTGAACTCGGACATCAGCATGCGCCTTTTCACAGGCAGGCACCAG
TACGACAGGCATGTGTACTCAAAGGTGCTGAAGCGTGTGGTGCAAAGCCA
AGCGGGGAATGTGAGGCTGCTAGGCGGGAAACCTGATGAGATTGGAGCAC
ACTCGTCGCGCAAGGGCGCTGCCTCCTGGGTTTCATCGGGATCATCTGCT
TGCCCATCGAGTACTGCTGTCAGCCTGCGAGCAGGATGGGTGCAACCTGG
CGTGGAGGACACGTACAAGCGCTTTGAGGCTGCTGGGGATCAATATTTGG
GGAGATGCTGTGCAGGTGAGACTTCAATAACACATCAACATATTGAGGAT
TTTAATCTGAATCGTGTCTGA
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