mRNA_16626 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|177308
Unique NamemRNA_16626
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|177308 vs. uniprot
Match: A0A835Z7L9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7L9_9STRA)

HSP 1 Score: 358 bits (918), Expect = 2.480e-125
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 1 
Query:    1 MVELKETGKLSRSAVGSKRSALYNLYQDYRQGEVYDTNLKDELTQLAKGLTRQLAQVARDGGSEVREGKAPLSMELYLLLAKCFMTEAVAENGHCDGTFGHLFFVLMWNLMCRASNCDDIMLQHMEWKGNAMAIYFGRQKTDQVLWLLCVVWFLSCPHHVEYDRHAMFT 507
            MVELKETGKLSRSAVGSKRSALYNLYQDYRQGEVYDTNLKDELTQLAKGLTRQLAQVARDGGSEVREGKAPLSMELYLLLAKCFMTEAVAENGHCDGTFGHLFFVLMWNLMCRASNCDDIMLQHMEWKGNAMAIYFGRQKTDQVLWLLCVVWFLSCPHHVEYDRHAMFT
Sbjct:    1 MVELKETGKLSRSAVGSKRSALYNLYQDYRQGEVYDTNLKDELTQLAKGLTRQLAQVARDGGSEVREGKAPLSMELYLLLAKCFMTEAVAENGHCDGTFGHLFFVLMWNLMCRASNCDDIMLQHMEWKGNAMAIYFGRQKTDQVLWLLCVVWFLSCPHHVEYDRHAMFT 169
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BLAST of jgi.p|Trimin1|177308 vs. uniprot
Match: A0A836CJM8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJM8_9STRA)

HSP 1 Score: 138 bits (348), Expect = 8.050e-35
Identity = 67/143 (46.85%), Postives = 97/143 (67.83%), Query Frame = 1 
Query:    1 MVELKETGKLSRSAVGSKRSALYNLYQDYRQGEVYDTNLKDELTQLAKGLTRQLAQV-ARDGGSEVREGKAPLSMELYLLLAKCFMTEAVAENGHCDGTFGHLFFVLMWNLMCRASN--CDDIMLQHMEWKGNAMAIYFGRQK 420
            ++ELK+ G+LS+S +  KR A+ NL+ D+ Q +V++   K E+  L KGL +QLA     +GG + R+ K PL  +LY  LA  F+ ++VAENGHC+G FGHLFFVL WNL+CR S   C DI+ QH+EW  +A+A++  + K
Sbjct:  120 LLELKDEGRLSKSNMQQKRCAVANLFNDFNQRDVFEKVAK-EIMVLQKGLVQQLAAAECSEGGGDARQDKPPLPFDLYQQLALAFLEDSVAENGHCNGPFGHLFFVLTWNLLCRTSKLGCGDILWQHLEWHDDALAVFLPQSK 261
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BLAST of jgi.p|Trimin1|177308 vs. uniprot
Match: A0A6G0R266_9STRA (Uncharacterized protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0R266_9STRA)

HSP 1 Score: 112 bits (280), Expect = 5.140e-27
Identity = 58/139 (41.73%), Postives = 80/139 (57.55%), Query Frame = 1 
Query:   13 KETGKLSRSAVGSKRSALYNLYQDYRQGEVYDTNLKDELTQLAKGLTRQLAQVARDGGSEVREGKAPLSMELYLLLAKCFMTEAVAENGHCDGTFGHLFFVLMWNLMCRASNCDDIMLQHMEWKGNAMAIYFGRQKTDQ 429
            K+ G LS SA+ + R+ L+NL++DY  G     +L+ ELT   KGL  ++A+ A +G S V+ GK PL  +LY  L    M  +  E       F H + V+ WNLMCR+SN   I   HMEW+G+A+ IYF   K DQ
Sbjct:  101 KDDGSLSYSALNTHRAGLFNLFRDY--GHTMSKSLESELTNYFKGLKNKIAKSAANGESAVKTGKDPLMFDLYSFLCDKMMAHSSKEMA-----FAHAYMVIAWNLMCRSSNAFGIRHSHMEWRGDALQIYFAHMKNDQ 232
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BLAST of jgi.p|Trimin1|177308 vs. uniprot
Match: A0A225UY04_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UY04_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.790e-24
Identity = 58/142 (40.85%), Postives = 82/142 (57.75%), Query Frame = 1 
Query:    4 VELKETGKLSRSAVGSKRSALYNLYQDYRQGEVYDTNLKDELTQLAKGLTRQLAQVARDGGSEVREGKAPLSMELYLLLAKCFMTEAVAENGHCDGTFGHLFFVLMWNLMCRASNCDDIMLQHMEWKGNAMAIYFGRQKTDQ 429
            +E K+ G LS SA+ + R+ L+NL++DYR        L+ ELT   KGL  +LA+ A +G + V+ GK PL  +LY      F+ E +  N   +  F H + V+ WNLM R+SN   I   HMEW+G+A+ IYF   K DQ
Sbjct:  101 LERKDGGALSYSALNTHRAGLFNLFRDYRH--TMSKPLESELTNYFKGLKHKLAKDAGNGDATVKSGKDPLMFDLY-----SFLCEKMLGNTSNEMVFAHAYMVIAWNLMFRSSNAFGIRHSHMEWRGDALQIYFAHMKNDQ 235
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BLAST of jgi.p|Trimin1|177308 vs. uniprot
Match: A0A081A6W3_PHYPR (Uncharacterized protein n=2 Tax=Phytophthora parasitica TaxID=4792 RepID=A0A081A6W3_PHYPR)

HSP 1 Score: 104 bits (259), Expect = 1.230e-23
Identity = 58/139 (41.73%), Postives = 79/139 (56.83%), Query Frame = 1 
Query:   13 KETGKLSRSAVGSKRSALYNLYQDYRQGEVYDTNLKDELTQLAKGLTRQLAQVARDGGSEVREGKAPLSMELYLLLAKCFMTEAVAENGHCDGTFGHLFFVLMWNLMCRASNCDDIMLQHMEWKGNAMAIYFGRQKTDQ 429
            K+   LS SA+ + R++L+NLY+DY  G      L+ ELT   KGL   LA+ A +G   ++ GK PL  +LY+ L K    + +   G  D  F H   V+ WNLMCR+SN   I   HMEW+G+A+ IYF   K DQ
Sbjct:  101 KDGSGLSYSALNTHRASLFNLYRDY--GCTMSKALESELTTYFKGLKHTLAKEASNGTGRIKTGKDPLMFDLYIFLCK----KMLLLPGK-DMAFSHACMVIAWNLMCRSSNAFGIRHSHMEWRGDALQIYFAHMKNDQ 232
[Close]
BLAST of jgi.p|Trimin1|177308 vs. uniprot
Match: A0A225USG6_9STRA (RT_RNaseH_2 domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225USG6_9STRA)

HSP 1 Score: 105 bits (262), Expect = 1.470e-23
Identity = 57/142 (40.14%), Postives = 80/142 (56.34%), Query Frame = 1 
Query:    4 VELKETGKLSRSAVGSKRSALYNLYQDYRQGEVYDTNLKDELTQLAKGLTRQLAQVARDGGSEVREGKAPLSMELYLLLAKCFMTEAVAENGHCDGTFGHLFFVLMWNLMCRASNCDDIMLQHMEWKGNAMAIYFGRQKTDQ 429
            +E K+ G LS SA+ + R  L+NL++DY         L+ ELT   KGL  +LA+ A +G + V+ GK PL  +LY      F+ E +  N   +  F H + V+ WNLM R+SN   I   HMEW+G+A+ IYF   K DQ
Sbjct:  225 LERKDGGALSYSALNTHRVGLFNLFRDY--SHTMSKPLESELTNYFKGLKHKLAKDAGNGDATVKSGKDPLMFDLY-----SFLCEKMLGNTSNEMVFAHAYMVIAWNLMFRSSNAFGIRHSHMEWRGDALQIYFAHMKNDQ 359
[Close]
BLAST of jgi.p|Trimin1|177308 vs. uniprot
Match: A0A081A8D9_PHYPR (Uncharacterized protein (Fragment) n=2 Tax=Phytophthora parasitica TaxID=4792 RepID=A0A081A8D9_PHYPR)

HSP 1 Score: 104 bits (259), Expect = 5.770e-23
Identity = 57/139 (41.01%), Postives = 79/139 (56.83%), Query Frame = 1 
Query:   13 KETGKLSRSAVGSKRSALYNLYQDYRQGEVYDTNLKDELTQLAKGLTRQLAQVARDGGSEVREGKAPLSMELYLLLAKCFMTEAVAENGHCDGTFGHLFFVLMWNLMCRASNCDDIMLQHMEWKGNAMAIYFGRQKTDQ 429
            K+   LS SA+ + R++L+NLY+DY  G      L+ ELT   KGL   LA+ A +G   ++ GK PL  +LY+ L K    + +   G  D  F H + V+ WNLMCR+SN   I   HMEW+G+A+ IYF     DQ
Sbjct:  104 KDGSGLSYSALNAHRASLFNLYRDY--GCTMSKALESELTTYFKGLRHTLAKEASNGTGRIKTGKDPLMFDLYIFLCK----KMLLLPGK-DMAFSHAYMVIAWNLMCRSSNAFGIRHSHMEWRGDALQIYFAHMNNDQ 235
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BLAST of jgi.p|Trimin1|177308 vs. uniprot
Match: W2QQ57_PHYPN (Uncharacterized protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2QQ57_PHYPN)

HSP 1 Score: 88.2 bits (217), Expect = 5.770e-19
Identity = 45/105 (42.86%), Postives = 60/105 (57.14%), Query Frame = 1 
Query:  115 LKDELTQLAKGLTRQLAQVARDGGSEVREGKAPLSMELYLLLAKCFMTEAVAENGHCDGTFGHLFFVLMWNLMCRASNCDDIMLQHMEWKGNAMAIYFGRQKTDQ 429
            L+ ELT   KGL   LA+ A +G   ++ GK PL  +LY+ L K    + +   G  D  F H + V+ WNLMCR+SN   I   HMEW+G+A+ IYF   K DQ
Sbjct:    5 LESELTTYFKGLKHTLAKEASNGTGRIKTGKDPLMFDLYIFLCK----KMLLLPGK-DMAFSHAYMVIAWNLMCRSSNAFGIRHSHMEWRGDALQIYFAHMKNDQ 104
[Close]
BLAST of jgi.p|Trimin1|177308 vs. uniprot
Match: V9F6G7_PHYPR (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora parasitica P1569 TaxID=1317065 RepID=V9F6G7_PHYPR)

HSP 1 Score: 88.2 bits (217), Expect = 1.140e-18
Identity = 45/105 (42.86%), Postives = 60/105 (57.14%), Query Frame = 1 
Query:  115 LKDELTQLAKGLTRQLAQVARDGGSEVREGKAPLSMELYLLLAKCFMTEAVAENGHCDGTFGHLFFVLMWNLMCRASNCDDIMLQHMEWKGNAMAIYFGRQKTDQ 429
            L+ ELT   KGL   LA+ A +G   ++ GK PL  +LY+ L K    + +   G  D  F H + V+ WNLMCR+SN   I   HMEW+G+A+ IYF   K DQ
Sbjct:    5 LESELTTYFKGLKHTLAKEASNGTGRIKTGKDPLMFDLYIFLCK----KMLLLPGK-DMAFSHAYMVIAWNLMCRSSNAFGIRHSHMEWRGDALQIYFAHMKNDQ 104
[Close]
BLAST of jgi.p|Trimin1|177308 vs. uniprot
Match: A0A0W8DK28_PHYNI (Uncharacterized protein n=2 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DK28_PHYNI)

HSP 1 Score: 88.2 bits (217), Expect = 2.940e-17
Identity = 45/105 (42.86%), Postives = 60/105 (57.14%), Query Frame = 1 
Query:  115 LKDELTQLAKGLTRQLAQVARDGGSEVREGKAPLSMELYLLLAKCFMTEAVAENGHCDGTFGHLFFVLMWNLMCRASNCDDIMLQHMEWKGNAMAIYFGRQKTDQ 429
            L+ ELT   KGL   LA+ A +G   ++ GK PL  +LY+ L K    + +   G  D  F H + V+ WNLMCR+SN   I   HMEW+G+A+ IYF   K DQ
Sbjct:    5 LESELTTYFKGLKHTLAKEASNGTGRIKTGKDPLMFDLYIFLCK----KMLLLPGK-DMAFSHAYMVIAWNLMCRSSNAFGIRHSHMEWRGDALQIYFAHMKNDQ 104
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|177308 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z7L9_9STRA2.480e-125100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CJM8_9STRA8.050e-3546.85Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6G0R266_9STRA5.140e-2741.73Uncharacterized protein n=3 Tax=Phytophthora fraga... [more]
A0A225UY04_9STRA1.790e-2440.85Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A081A6W3_PHYPR1.230e-2341.73Uncharacterized protein n=2 Tax=Phytophthora paras... [more]
A0A225USG6_9STRA1.470e-2340.14RT_RNaseH_2 domain-containing protein n=1 Tax=Phyt... [more]
A0A081A8D9_PHYPR5.770e-2341.01Uncharacterized protein (Fragment) n=2 Tax=Phytoph... [more]
W2QQ57_PHYPN5.770e-1942.86Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
V9F6G7_PHYPR1.140e-1842.86Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A0W8DK28_PHYNI2.940e-1742.86Uncharacterized protein n=2 Tax=Phytophthora nicot... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_149contigContig_149:122131..122874 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|177308|e_gw1.149.42.1
BRITEko00000,ko03036
KEGG koko:K11548
DescriptionNuf2 family
COG categoryD
Max annot lvl4776|Peronosporales
EggNOG OGsKOG4438@1|root,KOG4438@2759|Eukaryota,3Q997@4776|Peronosporales
Evalue1.28e-16
Seed ortholog4792.ETI37830
Hectar predicted targeting categoryother localisation
TranscriptId177630
TrackFilteredModels1
ProteinId177308
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177308gene_16626Tribonema minus UTEX_B_3156 geneContig_149 122131..122874 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16626_1exon_16626_1Tribonema minus UTEX_B_3156 exonContig_149 122131..122311 +
exon_16626_2exon_16626_2Tribonema minus UTEX_B_3156 exonContig_149 122546..122874 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16626CDS_16626Tribonema minus UTEX_B_3156 CDSContig_149 122131..122311 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177308Trimin1|177308|e_gw1.149.42.1Tribonema minus UTEX_B_3156 polypeptideContig_149 122131..122874 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16626 ID=mRNA_16626|Name=jgi.p|Trimin1|177308|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=510bp|location=Sequence derived from alignment at Contig_149:122131..122874+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGAGCTGAAGGAGACCGGCAAGCTTTCAAGGTCCGCTGTCGGCTC
CAAAAGGTCCGCCTTGTACAACTTGTACCAGGATTACAGGCAAGGCGAGG
TGTACGACACCAATCTGAAGGACGAGCTCACGCAGCTGGCCAAAGGATTG
ACCCGGCAGCTGGCGCAAGTGGCTAGAGATGGAGGGAGTGAAGTGCGCGA
GGGCAAAGCGCCACTTAGCATGGAGCTTTACCTCCTGCTGGCGAAGTGCT
TCATGACTGAGGCTGTAGCCGAAAATGGCCATTGCGATGGCACTTTTGGT
CATCTGTTCTTCGTGCTCATGTGGAATCTGATGTGCAGAGCATCTAATTG
CGATGACATCATGCTTCAGCACATGGAGTGGAAAGGCAACGCAATGGCCA
TCTACTTTGGCCGTCAAAAAACTGATCAGGTACTTTGGCTACTTTGTGTT
GTGTGGTTTTTGAGCTGCCCACACCATGTTGAGTACGATCGACATGCCAT
GTTCACGTAA
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protein sequence of jgi.p|Trimin1|177308

>Trimin1|177308|e_gw1.149.42.1 ID=Trimin1|177308|e_gw1.149.42.1|Name=jgi.p|Trimin1|177308|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=170bp
MVELKETGKLSRSAVGSKRSALYNLYQDYRQGEVYDTNLKDELTQLAKGL
TRQLAQVARDGGSEVREGKAPLSMELYLLLAKCFMTEAVAENGHCDGTFG
HLFFVLMWNLMCRASNCDDIMLQHMEWKGNAMAIYFGRQKTDQVLWLLCV
VWFLSCPHHVEYDRHAMFT*
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mRNA from alignment at Contig_149:122131..122874+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16626 ID=mRNA_16626|Name=jgi.p|Trimin1|177308|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=744bp|location=Sequence derived from alignment at Contig_149:122131..122874+ (Tribonema minus UTEX_B_3156 )
ATGGTGGAGCTGAAGGAGACCGGCAAGCTTTCAAGGTCCGCTGTCGGCTC
CAAAAGGTCCGCCTTGTACAACTTGTACCAGGATTACAGGCAAGGCGAGG
TGTACGACACCAATCTGAAGGACGAGCTCACGCAGCTGGCCAAAGGATTG
ACCCGGCAGCTGGCGCAAGTGGCTAGAGATGGTGAGTTCAGGCTGTGATA
ATTATCTGACACACTTAGTACCTGACCCAGCTTATTAGCTAGGCTGAGCC
TGCACTGATCCCTGGGCACATGAAAGCCATGAGCAACGTTCCCCACAGCA
GCATGGTACACTTGAAGCAGCGTAGACTGGCTTGCTTGAGCATGAGTATA
ATGGCTGATCTGATTTGAGAATGAAGGGGCTGAGTTCCTTGCGTTTTATC
CACTGCATGACGCAGGAGGGAGTGAAGTGCGCGAGGGCAAAGCGCCACTT
AGCATGGAGCTTTACCTCCTGCTGGCGAAGTGCTTCATGACTGAGGCTGT
AGCCGAAAATGGCCATTGCGATGGCACTTTTGGTCATCTGTTCTTCGTGC
TCATGTGGAATCTGATGTGCAGAGCATCTAATTGCGATGACATCATGCTT
CAGCACATGGAGTGGAAAGGCAACGCAATGGCCATCTACTTTGGCCGTCA
AAAAACTGATCAGGTACTTTGGCTACTTTGTGTTGTGTGGTTTTTGAGCT
GCCCACACCATGTTGAGTACGATCGACATGCCATGTTCACGTAA
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Coding sequence (CDS) from alignment at Contig_149:122131..122874+

>mRNA_16626 ID=mRNA_16626|Name=jgi.p|Trimin1|177308|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=510bp|location=Sequence derived from alignment at Contig_149:122131..122874+ (Tribonema minus UTEX_B_3156 )
ATGGTGGAGCTGAAGGAGACCGGCAAGCTTTCAAGGTCCGCTGTCGGCTC
CAAAAGGTCCGCCTTGTACAACTTGTACCAGGATTACAGGCAAGGCGAGG
TGTACGACACCAATCTGAAGGACGAGCTCACGCAGCTGGCCAAAGGATTG
ACCCGGCAGCTGGCGCAAGTGGCTAGAGATGGAGGGAGTGAAGTGCGCGA
GGGCAAAGCGCCACTTAGCATGGAGCTTTACCTCCTGCTGGCGAAGTGCT
TCATGACTGAGGCTGTAGCCGAAAATGGCCATTGCGATGGCACTTTTGGT
CATCTGTTCTTCGTGCTCATGTGGAATCTGATGTGCAGAGCATCTAATTG
CGATGACATCATGCTTCAGCACATGGAGTGGAAAGGCAACGCAATGGCCA
TCTACTTTGGCCGTCAAAAAACTGATCAGGTACTTTGGCTACTTTGTGTT
GTGTGGTTTTTGAGCTGCCCACACCATGTTGAGTACGATCGACATGCCAT
GTTCACGTAA
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