mRNA_16549 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|150632
Unique NamemRNA_16549
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|150632 vs. uniprot
Match: A0A835Z4M2_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4M2_9STRA)

HSP 1 Score: 257 bits (656), Expect = 7.920e-87
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1
Query:    1 VQVGKLGKGASASVFKAVDMFTLKLVAVKVIKMDRDSHAYRLIRHEVTALRSQRAPLLLDTFGDDSSIAPCDYITQFYGCAVDKSSKQASIAMEYECCGSLEEWCRDGLPTPEPWLAHVAYSILQ 375
            VQVGKLGKGASASVFKAVDMFTLKLVAVKVIKMDRDSHAYRLIRHEVTALRSQRAPLLLDTFGDDSSIAPCDYITQFYGCAVDKSSKQASIAMEYECCGSLEEWCRDGLPTPEPWLAHVAYSILQ
Sbjct:    1 VQVGKLGKGASASVFKAVDMFTLKLVAVKVIKMDRDSHAYRLIRHEVTALRSQRAPLLLDTFGDDSSIAPCDYITQFYGCAVDKSSKQASIAMEYECCGSLEEWCRDGLPTPEPWLAHVAYSILQ 125          
BLAST of jgi.p|Trimin1|150632 vs. uniprot
Match: A0A835ZAN3_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAN3_9STRA)

HSP 1 Score: 198 bits (504), Expect = 1.240e-63
Identity = 95/124 (76.61%), Postives = 107/124 (86.29%), Query Frame = 1
Query:    4 QVGKLGKGASASVFKAVDMFTLKLVAVKVIKMDRDSHAYRLIRHEVTALRSQRAPLLLDTFGDDSSIAPCDYITQFYGCAVDKSSKQASIAMEYECCGSLEEWCRDGLPTPEPWLAHVAYSILQ 375
            QVG+LG+GASA VFKAVD+ TLKLVAVKVI   RDS A+RLI+HEVTALRSQRAPLL  TFG D++  PC +I++FYGC VDK   QASIAMEYECCGSLE+W +DGLPTPEPWLAHVAYSILQ
Sbjct:    3 QVGRLGRGASAKVFKAVDVDTLKLVAVKVISFKRDSQAHRLIKHEVTALRSQRAPLLSKTFGTDAATTPCPHISRFYGCVVDKLRMQASIAMEYECCGSLEDWVKDGLPTPEPWLAHVAYSILQ 126          
BLAST of jgi.p|Trimin1|150632 vs. uniprot
Match: A0A836CD42_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD42_9STRA)

HSP 1 Score: 161 bits (407), Expect = 8.160e-49
Identity = 81/125 (64.80%), Postives = 95/125 (76.00%), Query Frame = 1
Query:    4 QVGKLGKGASASVFKAVDMFTLKLVAVKVIKMD-RDSHAYRLIRHEVTALRSQRAPLLLDTFGDDSSIAPCDYITQFYGCAVDKSSKQASIAMEYECCGSLEEWCRDGLPTPEPWLAHVAYSILQ 375
            QV KLG GAS SVFKAVD+ TL+LVAVK+I  + RD  + RLIR EV AL SQ AP+LL TFG  + + PC YI+ FYG   DK+  QASIAMEY CCGSLE W +DGLP PEPW+AH+AYS+LQ
Sbjct:    7 QVAKLGSGASGSVFKAVDVDTLQLVAVKLIHFNSRDMKSARLIRREVAALSSQSAPMLLQTFG--AGMTPCPYISHFYGVKYDKTRMQASIAMEYACCGSLEAWSKDGLPVPEPWIAHIAYSVLQ 129          
BLAST of jgi.p|Trimin1|150632 vs. uniprot
Match: A0A836C8E3_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8E3_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.100e-17
Identity = 54/128 (42.19%), Postives = 81/128 (63.28%), Query Frame = 1
Query:    1 VQVGKLGKGASASVFKAVDMFTLKLVAVKVIKM----DRDSHAYRLIRHEVTALRSQRAPLLLDTFGDDSSIAPCDYITQFYGCAVDKSSKQASIAMEYECCGSLEEWCRDGLPTPEPWLAHVAYSIL 372
            +++ +LGKGAS+SV+ AV + TL +VA+K   +    DRD+     +R E+ ALR+QR+PL+  +F  D + +P  +I +FYG  V    + A +A+E    GSL+ +   G P PEPWLAHVA+S L
Sbjct:    1 LKLQRLGKGASSSVYMAVCVRTLAVVALKESPIRTAADRDA-----VRSELQALRTQRSPLMDRSFVGDDTASP--HIVRFYG-GVMLQERTAVLAVELVAGGSLQAFIDRGSPAPEPWLAHVAHSCL 120          
BLAST of jgi.p|Trimin1|150632 vs. uniprot
Match: A0A662XBM9_9STRA (Protein kinase domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XBM9_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 3.580e-10
Identity = 40/126 (31.75%), Postives = 67/126 (53.17%), Query Frame = 1
Query:    4 QVGKLGKGASASVFKAVDMFTLKLVAVKVIKMDRDSHAYRLIRHEVTALRSQRAPLLLDTFGDDS---SIAPCDYITQFYGCAVDKSSKQASIAMEYECCGSLEEWCRDGLPTPEPWLAHVAYSIL 372
            +V KLGKGA  +VF A+ +  LKLVAVK + + ++   + +++ E+ AL    AP+ +DT    +   S  PC Y+  FYG  +  +    S+ ME+   GS+++     +   E  L H A+  +
Sbjct:  182 RVKKLGKGAGGTVFLALYLPVLKLVAVKEVVVYQEEERH-MVKRELHALHENLAPIDVDTGAFQAAGESSGPCPYLVAFYGAYLKPTKCAVSVVMEFMDMGSVQDLLDAAVTVSESVLRHAAFCCI 306          
BLAST of jgi.p|Trimin1|150632 vs. uniprot
Match: A0A7S1U8N0_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8N0_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 2.780e-8
Identity = 41/125 (32.80%), Postives = 70/125 (56.00%), Query Frame = 1
Query:    1 VQVGKLGKGASASVFKAVDMFTLKLVAVKVIKMDRDSHAYRLIRHEVTALRSQRAPLLLDTFGDDSSIAPCDYITQFYGCAVDKSSKQASIAMEYECCGSLEEWCRDGLPTPEPWLAHVAYSILQ 375
            + +G+LG+GAS +V+KA+ + TL +VAVK++ +++D    +++R E+ ALR+    L  +  G+ S I       +FY    D       I +EY   G+L++     +P  E  LA VA S+L+
Sbjct:   84 ILLGELGRGASGTVYKAMHVPTLSIVAVKMVFVNQDEKRRQMVR-ELRALRALGKGLGAE--GESSVI-------KFYDAFTDMERNAVCIVLEYMNAGTLQDLVNAQVPVNEHMLAAVASSVLK 198          
BLAST of jgi.p|Trimin1|150632 vs. uniprot
Match: A0A7S2PQG1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PQG1_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 6.270e-7
Identity = 43/120 (35.83%), Postives = 59/120 (49.17%), Query Frame = 1
Query:   13 KLGKGASASVFKAVDMFTLKLVAVKVIKMDRDSHAYRLIRHEVTALRSQRAPLLLDTFGDDSSIAPCDYITQFYGCAVDKSSKQASIAMEYECCGSLEEWCRDGLPTPEPWLAHVAYSIL 372
            KLG+GAS +VFKA+D+ +LKLVAVK+I +  D    R I  E+  L        + T GD   +   D I +      D + K   I  EY   GSL++    G    E  L+ +AY  L
Sbjct:  354 KLGEGASGTVFKALDLCSLKLVAVKIISI-ADKRKRRQIVSELANLHELLRDSRVATSGD-FELNGEDCIVELIDAFSDANDKSVGICFEYMDGGSLQDIVDKGECANESILSGIAYQCL 471          
BLAST of jgi.p|Trimin1|150632 vs. uniprot
Match: A0A7S2LQJ8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LQJ8_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 6.420e-7
Identity = 43/120 (35.83%), Postives = 59/120 (49.17%), Query Frame = 1
Query:   13 KLGKGASASVFKAVDMFTLKLVAVKVIKMDRDSHAYRLIRHEVTALRSQRAPLLLDTFGDDSSIAPCDYITQFYGCAVDKSSKQASIAMEYECCGSLEEWCRDGLPTPEPWLAHVAYSIL 372
            KLG+GAS +VFKA+D+ +LKLVAVK+I +  D    R I  E+  L        + T GD   +   D I +      D + K   I  EY   GSL++    G    E  L+ +AY  L
Sbjct:  609 KLGEGASGTVFKALDLCSLKLVAVKIISI-ADKRKRRQIVSELANLHELLRDSRVATSGD-FELNGEDCIVELIDAFSDANDKSVGICFEYMDGGSLQDIVDKGECANESILSGIAYQCL 726          
BLAST of jgi.p|Trimin1|150632 vs. uniprot
Match: E9B2K2_LEIMU (Protein kinase domain-containing protein n=1 Tax=Leishmania mexicana (strain MHOM/GT/2001/U1103) TaxID=929439 RepID=E9B2K2_LEIMU)

HSP 1 Score: 51.6 bits (122), Expect = 4.940e-5
Identity = 37/123 (30.08%), Postives = 54/123 (43.90%), Query Frame = 1
Query:    1 VQVGKLGKGASASVFKAVDMFTLKLVAVKVIKMDRDSHAYRLIRHEVTALRSQRAPLLLDTFGDDSSIAPCDYITQFYGCAVDKSSKQASIAMEYECCGSLEEWCRDGLPTPEPWLAHVAYSI 369
            V  G +GKGA  +V++A+++ T ++VAVK  +   D     L   E   L               S + P   +  FYG + D  + Q  + MEY   GS+ +  R   P PEP   H A  I
Sbjct:  847 VSSGPIGKGAFGAVYRALNLDTGRIVAVKQSRYSYDDKTADLNWREFQML---------------SMLPPHANVITFYGASRDVDTNQLLLVMEYASGGSIVQLYRYFRPIPEPLFYHHAVGI 954          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|150632 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A835Z4M2_9STRA7.920e-87100.00Kinase-like domain-containing protein (Fragment) n... [more]
A0A835ZAN3_9STRA1.240e-6376.61Kinase-like domain-containing protein (Fragment) n... [more]
A0A836CD42_9STRA8.160e-4964.80Kinase-like domain-containing protein (Fragment) n... [more]
A0A836C8E3_9STRA1.100e-1742.19Kinase-like domain-containing protein (Fragment) n... [more]
A0A662XBM9_9STRA3.580e-1031.75Protein kinase domain-containing protein n=2 Tax=N... [more]
A0A7S1U8N0_9STRA2.780e-832.80Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S2PQG1_9STRA6.270e-735.83Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2LQJ8_9STRA6.420e-735.83Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
E9B2K2_LEIMU4.940e-530.08Protein kinase domain-containing protein n=1 Tax=L... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_211contigContig_211:195895..196269 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|150632|gw1.211.41.1
BRITEko00000,ko00001,ko01000,ko01001
KEGG Pathwayko04016,ko05418,map04016,map05418
KEGG koko:K20607
EC2.7.12.2
DescriptionMAP kinase kinase activity
COG categoryG
Max annot lvl2759|Eukaryota
EggNOG OGsKOG0581@1|root,KOG0581@2759|Eukaryota
Evalue5.29e-10
Seed ortholog157072.XP_008870732.1
Hectar predicted targeting categoryother localisation
TranscriptId150954
TrackFilteredModels1
ProteinId150632
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|150632gene_16549Tribonema minus UTEX_B_3156 geneContig_211 195895..196269 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16549_1exon_16549_1Tribonema minus UTEX_B_3156 exonContig_211 195895..196269 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16549CDS_16549Tribonema minus UTEX_B_3156 CDSContig_211 195895..196269 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|150632Trimin1|150632|gw1.211.41.1Tribonema minus UTEX_B_3156 polypeptideContig_211 195895..196269 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16549 ID=mRNA_16549|Name=jgi.p|Trimin1|150632|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=375bp|location=Sequence derived from alignment at Contig_211:195895..196269- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTGCAGGTTGGCAAGCTTGGCAAGGGAGCGAGCGCCAGTGTGTTCAAGGC
TGTCGACATGTTCACGTTGAAGCTGGTAGCAGTCAAGGTCATCAAGATGG
ACAGGGACTCGCACGCATATCGGCTCATCAGGCATGAGGTCACGGCTCTG
CGCTCACAGCGAGCCCCTCTGCTGTTGGACACCTTCGGCGACGACTCGAG
CATTGCTCCATGCGACTACATCACCCAGTTCTATGGCTGCGCGGTGGACA
AGTCTTCAAAGCAGGCCAGCATTGCCATGGAGTATGAGTGCTGCGGCAGC
TTGGAGGAGTGGTGTCGAGACGGGCTGCCAACGCCTGAGCCGTGGCTGGC
CCATGTGGCGTACTCCATACTGCAG
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protein sequence of jgi.p|Trimin1|150632

>Trimin1|150632|gw1.211.41.1 ID=Trimin1|150632|gw1.211.41.1|Name=jgi.p|Trimin1|150632|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=125bp
VQVGKLGKGASASVFKAVDMFTLKLVAVKVIKMDRDSHAYRLIRHEVTAL
RSQRAPLLLDTFGDDSSIAPCDYITQFYGCAVDKSSKQASIAMEYECCGS
LEEWCRDGLPTPEPWLAHVAYSILQ
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mRNA from alignment at Contig_211:195895..196269-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16549 ID=mRNA_16549|Name=jgi.p|Trimin1|150632|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=375bp|location=Sequence derived from alignment at Contig_211:195895..196269- (Tribonema minus UTEX_B_3156 )
GTGCAGGTTGGCAAGCTTGGCAAGGGAGCGAGCGCCAGTGTGTTCAAGGC TGTCGACATGTTCACGTTGAAGCTGGTAGCAGTCAAGGTCATCAAGATGG ACAGGGACTCGCACGCATATCGGCTCATCAGGCATGAGGTCACGGCTCTG CGCTCACAGCGAGCCCCTCTGCTGTTGGACACCTTCGGCGACGACTCGAG CATTGCTCCATGCGACTACATCACCCAGTTCTATGGCTGCGCGGTGGACA AGTCTTCAAAGCAGGCCAGCATTGCCATGGAGTATGAGTGCTGCGGCAGC TTGGAGGAGTGGTGTCGAGACGGGCTGCCAACGCCTGAGCCGTGGCTGGC CCATGTGGCGTACTCCATACTGCAG
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Coding sequence (CDS) from alignment at Contig_211:195895..196269-

>mRNA_16549 ID=mRNA_16549|Name=jgi.p|Trimin1|150632|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=375bp|location=Sequence derived from alignment at Contig_211:195895..196269- (Tribonema minus UTEX_B_3156 )
GTGCAGGTTGGCAAGCTTGGCAAGGGAGCGAGCGCCAGTGTGTTCAAGGC
TGTCGACATGTTCACGTTGAAGCTGGTAGCAGTCAAGGTCATCAAGATGG
ACAGGGACTCGCACGCATATCGGCTCATCAGGCATGAGGTCACGGCTCTG
CGCTCACAGCGAGCCCCTCTGCTGTTGGACACCTTCGGCGACGACTCGAG
CATTGCTCCATGCGACTACATCACCCAGTTCTATGGCTGCGCGGTGGACA
AGTCTTCAAAGCAGGCCAGCATTGCCATGGAGTATGAGTGCTGCGGCAGC
TTGGAGGAGTGGTGTCGAGACGGGCTGCCAACGCCTGAGCCGTGGCTGGC
CCATGTGGCGTACTCCATACTGCAG
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