mRNA_16549 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|150632 vs. uniprot
Match: A0A835Z4M2_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4M2_9STRA) HSP 1 Score: 257 bits (656), Expect = 7.920e-87 Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1
Query: 1 VQVGKLGKGASASVFKAVDMFTLKLVAVKVIKMDRDSHAYRLIRHEVTALRSQRAPLLLDTFGDDSSIAPCDYITQFYGCAVDKSSKQASIAMEYECCGSLEEWCRDGLPTPEPWLAHVAYSILQ 375
VQVGKLGKGASASVFKAVDMFTLKLVAVKVIKMDRDSHAYRLIRHEVTALRSQRAPLLLDTFGDDSSIAPCDYITQFYGCAVDKSSKQASIAMEYECCGSLEEWCRDGLPTPEPWLAHVAYSILQ
Sbjct: 1 VQVGKLGKGASASVFKAVDMFTLKLVAVKVIKMDRDSHAYRLIRHEVTALRSQRAPLLLDTFGDDSSIAPCDYITQFYGCAVDKSSKQASIAMEYECCGSLEEWCRDGLPTPEPWLAHVAYSILQ 125
BLAST of jgi.p|Trimin1|150632 vs. uniprot
Match: A0A835ZAN3_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAN3_9STRA) HSP 1 Score: 198 bits (504), Expect = 1.240e-63 Identity = 95/124 (76.61%), Postives = 107/124 (86.29%), Query Frame = 1
Query: 4 QVGKLGKGASASVFKAVDMFTLKLVAVKVIKMDRDSHAYRLIRHEVTALRSQRAPLLLDTFGDDSSIAPCDYITQFYGCAVDKSSKQASIAMEYECCGSLEEWCRDGLPTPEPWLAHVAYSILQ 375
QVG+LG+GASA VFKAVD+ TLKLVAVKVI RDS A+RLI+HEVTALRSQRAPLL TFG D++ PC +I++FYGC VDK QASIAMEYECCGSLE+W +DGLPTPEPWLAHVAYSILQ
Sbjct: 3 QVGRLGRGASAKVFKAVDVDTLKLVAVKVISFKRDSQAHRLIKHEVTALRSQRAPLLSKTFGTDAATTPCPHISRFYGCVVDKLRMQASIAMEYECCGSLEDWVKDGLPTPEPWLAHVAYSILQ 126
BLAST of jgi.p|Trimin1|150632 vs. uniprot
Match: A0A836CD42_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD42_9STRA) HSP 1 Score: 161 bits (407), Expect = 8.160e-49 Identity = 81/125 (64.80%), Postives = 95/125 (76.00%), Query Frame = 1
Query: 4 QVGKLGKGASASVFKAVDMFTLKLVAVKVIKMD-RDSHAYRLIRHEVTALRSQRAPLLLDTFGDDSSIAPCDYITQFYGCAVDKSSKQASIAMEYECCGSLEEWCRDGLPTPEPWLAHVAYSILQ 375
QV KLG GAS SVFKAVD+ TL+LVAVK+I + RD + RLIR EV AL SQ AP+LL TFG + + PC YI+ FYG DK+ QASIAMEY CCGSLE W +DGLP PEPW+AH+AYS+LQ
Sbjct: 7 QVAKLGSGASGSVFKAVDVDTLQLVAVKLIHFNSRDMKSARLIRREVAALSSQSAPMLLQTFG--AGMTPCPYISHFYGVKYDKTRMQASIAMEYACCGSLEAWSKDGLPVPEPWIAHIAYSVLQ 129
BLAST of jgi.p|Trimin1|150632 vs. uniprot
Match: A0A836C8E3_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8E3_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 1.100e-17 Identity = 54/128 (42.19%), Postives = 81/128 (63.28%), Query Frame = 1
Query: 1 VQVGKLGKGASASVFKAVDMFTLKLVAVKVIKM----DRDSHAYRLIRHEVTALRSQRAPLLLDTFGDDSSIAPCDYITQFYGCAVDKSSKQASIAMEYECCGSLEEWCRDGLPTPEPWLAHVAYSIL 372
+++ +LGKGAS+SV+ AV + TL +VA+K + DRD+ +R E+ ALR+QR+PL+ +F D + +P +I +FYG V + A +A+E GSL+ + G P PEPWLAHVA+S L
Sbjct: 1 LKLQRLGKGASSSVYMAVCVRTLAVVALKESPIRTAADRDA-----VRSELQALRTQRSPLMDRSFVGDDTASP--HIVRFYG-GVMLQERTAVLAVELVAGGSLQAFIDRGSPAPEPWLAHVAHSCL 120
BLAST of jgi.p|Trimin1|150632 vs. uniprot
Match: A0A662XBM9_9STRA (Protein kinase domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XBM9_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 3.580e-10 Identity = 40/126 (31.75%), Postives = 67/126 (53.17%), Query Frame = 1
Query: 4 QVGKLGKGASASVFKAVDMFTLKLVAVKVIKMDRDSHAYRLIRHEVTALRSQRAPLLLDTFGDDS---SIAPCDYITQFYGCAVDKSSKQASIAMEYECCGSLEEWCRDGLPTPEPWLAHVAYSIL 372
+V KLGKGA +VF A+ + LKLVAVK + + ++ + +++ E+ AL AP+ +DT + S PC Y+ FYG + + S+ ME+ GS+++ + E L H A+ +
Sbjct: 182 RVKKLGKGAGGTVFLALYLPVLKLVAVKEVVVYQEEERH-MVKRELHALHENLAPIDVDTGAFQAAGESSGPCPYLVAFYGAYLKPTKCAVSVVMEFMDMGSVQDLLDAAVTVSESVLRHAAFCCI 306
BLAST of jgi.p|Trimin1|150632 vs. uniprot
Match: A0A7S1U8N0_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8N0_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 2.780e-8 Identity = 41/125 (32.80%), Postives = 70/125 (56.00%), Query Frame = 1
Query: 1 VQVGKLGKGASASVFKAVDMFTLKLVAVKVIKMDRDSHAYRLIRHEVTALRSQRAPLLLDTFGDDSSIAPCDYITQFYGCAVDKSSKQASIAMEYECCGSLEEWCRDGLPTPEPWLAHVAYSILQ 375
+ +G+LG+GAS +V+KA+ + TL +VAVK++ +++D +++R E+ ALR+ L + G+ S I +FY D I +EY G+L++ +P E LA VA S+L+
Sbjct: 84 ILLGELGRGASGTVYKAMHVPTLSIVAVKMVFVNQDEKRRQMVR-ELRALRALGKGLGAE--GESSVI-------KFYDAFTDMERNAVCIVLEYMNAGTLQDLVNAQVPVNEHMLAAVASSVLK 198
BLAST of jgi.p|Trimin1|150632 vs. uniprot
Match: A0A7S2PQG1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PQG1_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 6.270e-7 Identity = 43/120 (35.83%), Postives = 59/120 (49.17%), Query Frame = 1
Query: 13 KLGKGASASVFKAVDMFTLKLVAVKVIKMDRDSHAYRLIRHEVTALRSQRAPLLLDTFGDDSSIAPCDYITQFYGCAVDKSSKQASIAMEYECCGSLEEWCRDGLPTPEPWLAHVAYSIL 372
KLG+GAS +VFKA+D+ +LKLVAVK+I + D R I E+ L + T GD + D I + D + K I EY GSL++ G E L+ +AY L
Sbjct: 354 KLGEGASGTVFKALDLCSLKLVAVKIISI-ADKRKRRQIVSELANLHELLRDSRVATSGD-FELNGEDCIVELIDAFSDANDKSVGICFEYMDGGSLQDIVDKGECANESILSGIAYQCL 471
BLAST of jgi.p|Trimin1|150632 vs. uniprot
Match: A0A7S2LQJ8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LQJ8_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 6.420e-7 Identity = 43/120 (35.83%), Postives = 59/120 (49.17%), Query Frame = 1
Query: 13 KLGKGASASVFKAVDMFTLKLVAVKVIKMDRDSHAYRLIRHEVTALRSQRAPLLLDTFGDDSSIAPCDYITQFYGCAVDKSSKQASIAMEYECCGSLEEWCRDGLPTPEPWLAHVAYSIL 372
KLG+GAS +VFKA+D+ +LKLVAVK+I + D R I E+ L + T GD + D I + D + K I EY GSL++ G E L+ +AY L
Sbjct: 609 KLGEGASGTVFKALDLCSLKLVAVKIISI-ADKRKRRQIVSELANLHELLRDSRVATSGD-FELNGEDCIVELIDAFSDANDKSVGICFEYMDGGSLQDIVDKGECANESILSGIAYQCL 726
BLAST of jgi.p|Trimin1|150632 vs. uniprot
Match: E9B2K2_LEIMU (Protein kinase domain-containing protein n=1 Tax=Leishmania mexicana (strain MHOM/GT/2001/U1103) TaxID=929439 RepID=E9B2K2_LEIMU) HSP 1 Score: 51.6 bits (122), Expect = 4.940e-5 Identity = 37/123 (30.08%), Postives = 54/123 (43.90%), Query Frame = 1
Query: 1 VQVGKLGKGASASVFKAVDMFTLKLVAVKVIKMDRDSHAYRLIRHEVTALRSQRAPLLLDTFGDDSSIAPCDYITQFYGCAVDKSSKQASIAMEYECCGSLEEWCRDGLPTPEPWLAHVAYSI 369
V G +GKGA +V++A+++ T ++VAVK + D L E L S + P + FYG + D + Q + MEY GS+ + R P PEP H A I
Sbjct: 847 VSSGPIGKGAFGAVYRALNLDTGRIVAVKQSRYSYDDKTADLNWREFQML---------------SMLPPHANVITFYGASRDVDTNQLLLVMEYASGGSIVQLYRYFRPIPEPLFYHHAVGI 954 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|150632 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_16549 ID=mRNA_16549|Name=jgi.p|Trimin1|150632|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=375bp|location=Sequence derived from alignment at Contig_211:195895..196269- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GTGCAGGTTGGCAAGCTTGGCAAGGGAGCGAGCGCCAGTGTGTTCAAGGCback to top protein sequence of jgi.p|Trimin1|150632 >Trimin1|150632|gw1.211.41.1 ID=Trimin1|150632|gw1.211.41.1|Name=jgi.p|Trimin1|150632|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=125bp VQVGKLGKGASASVFKAVDMFTLKLVAVKVIKMDRDSHAYRLIRHEVTALback to top mRNA from alignment at Contig_211:195895..196269- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_16549 ID=mRNA_16549|Name=jgi.p|Trimin1|150632|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=375bp|location=Sequence derived from alignment at Contig_211:195895..196269- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_211:195895..196269- >mRNA_16549 ID=mRNA_16549|Name=jgi.p|Trimin1|150632|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=375bp|location=Sequence derived from alignment at Contig_211:195895..196269- (Tribonema minus UTEX_B_3156 )back to top |