mRNA_16540 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|354141
Unique NamemRNA_16540
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|354141 vs. uniprot
Match: A0A835Z355_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z355_9STRA)

HSP 1 Score: 698 bits (1801), Expect = 4.380e-252
Identity = 371/371 (100.00%), Postives = 371/371 (100.00%), Query Frame = 1
Query:    1 MSSTTDRTSSEASAGSSLVVSKSFDRVLDSLSDQDRYNAVLQGLAGIAVSSSGKDRFVELLKLLDEMADRNIGCTTRSGGAVVDAAASTAEVAKVATAMSKLRRTGAAQKFSRELTRLAPLPLDERRRARALKDLVPTPSDDRGGDLMHAGAFLGVVGFDFAGDGLAPVLDFDATVPAILSLATAGAVALDIFQGGAERSRRVLAGLSRLFTRDVSRESRAEAGAFLAGYLTGLPCFAFKPNVLEALRMVEGMPELKEAFQSGGAGGAHRTLVWLLSAVAGEHLTHRQLIVSDPRQATTFLLLARERGLLPSCGDAAADAEDDEMAVRWAFNEARELLRDNEGMFEALRQRLETGGATVGECVSLIDRYRG 1113
            MSSTTDRTSSEASAGSSLVVSKSFDRVLDSLSDQDRYNAVLQGLAGIAVSSSGKDRFVELLKLLDEMADRNIGCTTRSGGAVVDAAASTAEVAKVATAMSKLRRTGAAQKFSRELTRLAPLPLDERRRARALKDLVPTPSDDRGGDLMHAGAFLGVVGFDFAGDGLAPVLDFDATVPAILSLATAGAVALDIFQGGAERSRRVLAGLSRLFTRDVSRESRAEAGAFLAGYLTGLPCFAFKPNVLEALRMVEGMPELKEAFQSGGAGGAHRTLVWLLSAVAGEHLTHRQLIVSDPRQATTFLLLARERGLLPSCGDAAADAEDDEMAVRWAFNEARELLRDNEGMFEALRQRLETGGATVGECVSLIDRYRG
Sbjct:    1 MSSTTDRTSSEASAGSSLVVSKSFDRVLDSLSDQDRYNAVLQGLAGIAVSSSGKDRFVELLKLLDEMADRNIGCTTRSGGAVVDAAASTAEVAKVATAMSKLRRTGAAQKFSRELTRLAPLPLDERRRARALKDLVPTPSDDRGGDLMHAGAFLGVVGFDFAGDGLAPVLDFDATVPAILSLATAGAVALDIFQGGAERSRRVLAGLSRLFTRDVSRESRAEAGAFLAGYLTGLPCFAFKPNVLEALRMVEGMPELKEAFQSGGAGGAHRTLVWLLSAVAGEHLTHRQLIVSDPRQATTFLLLARERGLLPSCGDAAADAEDDEMAVRWAFNEARELLRDNEGMFEALRQRLETGGATVGECVSLIDRYRG 371          
BLAST of jgi.p|Trimin1|354141 vs. uniprot
Match: D8LH72_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH72_ECTSI)

HSP 1 Score: 332 bits (851), Expect = 9.200e-108
Identity = 178/360 (49.44%), Postives = 243/360 (67.50%), Query Frame = 1
Query:   40 AGSSLVVSKSFDRVLDSLSDQDRYNAVLQGLAGIA-----VSSSGKDRFVELLKLLDEMADRNIGCTTRSGGAVVDAAASTAEVAKVATAMSKLRRTGAAQKFSRELTRLAPLPLDERRRARALKDLVPTPSDDRGGDLMHAGAFLGVVGFDFAGDGLAPVLDFDATVPAILSLATAGAVALDIFQGGAERSRRVLAGLSRLFTRDVSRESRAEAGAFLAGYLTGLPCFAFKPNVLEALRMVEGMPELKEAFQSGGAGGAHRTLVWLLSAVAGEHLTHRQLIVSDPRQATTFLLLARERGLLPSCGDAAADAEDDEMAVRWAFNEARELLRDNEGMFEALRQRLETGGATVGECVSLIDR 1104
            AG  LV + S +RV++ L + ++YNAVLQG++ I      V  + +  F E+ +LLDEM    I C+ R+  AVVDAA +T ++  +    SK+RR G  QKFSR+L RL+ LP +  ++ +AL+ LVP P DDR  ++ +A +F+ +VG DF+ +G+  V+ +D T+P ++   TA AV +D+++     S+ VL G++RLF +DV RESRAEAGAFL  Y+TGLPCFAF+P+ +EALRM    P++KE F +G   G HR LVWLL+ VAGE L HRQ+I SDPRQA  FL + R R           D EDD   V+WAFNEAR LL+DNEG FEALR+RLE GGATVG+CVS+I+R
Sbjct:   22 AGGGLVKTASLERVMEGLGENEKYNAVLQGVSSIVMGKKKVGDAARGAFEEVFQLLDEMHANRIKCSIRTASAVVDAATATTDIGIITKVFSKIRRAGVGQKFSRDLGRLSLLPTEASKKEKALRGLVPVPDDDRAQEIGYAASFMVLVGSDFSWEGIGQVMHYDTTIPTVIGAVTAAAVGIDVWKRSGCTSKMVLNGMNRLFLKDVERESRAEAGAFLTAYMTGLPCFAFQPSAVEALRMAAD-PDMKETFLNGN--GVHRILVWLLAGVAGEGLVHRQMIASDPRQAFAFLQMVRNRE-----DGFELDPEDDSERVQWAFNEARALLKDNEGAFEALRRRLEGGGATVGDCVSIIER 373          
BLAST of jgi.p|Trimin1|354141 vs. uniprot
Match: A0A4D9D6H3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6H3_9STRA)

HSP 1 Score: 204 bits (519), Expect = 4.100e-58
Identity = 129/360 (35.83%), Postives = 196/360 (54.44%), Query Frame = 1
Query:   61 SKSFDRVLDSLSDQDRYNAVLQGLAGIAVSSSGK-------------DRFVELLKLLDEMADRNIGCTTRSGGAVVDAAASTAEVAKVATAMSKLRRTGAAQKFSRELTRLAPLPLDERRRARALKDLVPTPSDDRGGDLMHAGAFLGVVGFDFAGDGLAPVLDFDATVPAILSLATAGAVALDIFQGGAERSRRVLAGLSRLFTRDVSRESRAEAGAFLAGYLTGLPCFAFKPNVLEALRMVEGMPELKEAFQSGGAGGAHRTLVWLLSAVAGEHLTHRQLIVSDPRQATTFLLLARERGLLPSCGDAAADAEDDEMAVRWAFNEARELLRDNEGMFEALRQRLETGGATVGECVSLID 1101
            S  +D ++D++SD ++YN +LQ  A   V S GK             + F  L KL++EM D+++  T RS  A++DAA+ + ++  +   +   RR G ++ F+R +  L P P    R A    DL P PSD R  +L    A L VVG   + + + P+L  D T  +++    A     D+ Q   +     LAG++RLF RD  R++  +A  FL+ YL GLPCF F PNV+EA+RM   +P   E   S    G +R LV+LL+ VA E   + QL+ SD RQA   L +   RG          +  ++E+ + WA+ EA+ LLR +  + E L+QR+E+GGATVG+CV+L++
Sbjct:   20 SSQYDELMDNMSDDEKYNILLQSRASSLVQSLGKKGRGMGGSSRSTSEAFTPLYKLVEEMTDKDMRITLRSFAALIDAASLSRDLNVIQECLLLARRNGVSRAFARSVGALNPPP--PLRAASDRYDLSPVPSDARTSELAAGVAALTVVGGALSVEAVGPLLHADTTAASVVLGGAAVMGVWDLTQRKGQELTLALAGINRLFLRDPERDAHVQAATFLSAYLLGLPCFCFSPNVMEAVRMTAQVPAFAETLSS--TAGLNRLLVYLLAPVAVEEANYAQLMASDARQARALLQVYMGRGEA-----RGQEGREEEVLLPWAYEEAKRLLRSHSALLERLKQRMESGGATVGDCVALLE 370          
BLAST of jgi.p|Trimin1|354141 vs. uniprot
Match: A0A0G4G463_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4G463_VITBC)

HSP 1 Score: 200 bits (509), Expect = 4.420e-56
Identity = 128/349 (36.68%), Postives = 189/349 (54.15%), Query Frame = 1
Query:   76 RVLDSLSDQDRYNAVLQGLAGIAVSSSGKDRFVELLK----LLDEMADRNIGCTTRSGGAVVDAAASTAEVAKVATAMSKLRRTGAAQKFSRELTRLAPLPLDERRRARALKDLVPTPSDDRGGDLMHAGAFLGVVGFDFAGDGLAPVL--DFDATVPAILSLATAGAVALDIFQGGAERSRRVLAGLSRLFTRDVSRESRAEAGAFLAGYLTGLPCFAFKPNVLEALRMVEGMPELKEAFQSGGAGGAHRTLVWLLSAVAGEHLTHRQLIVSDPRQATTFLLLARERGLLPSCGDAAADAEDDEMAVRWAFNEARELLRDNEGMFEALRQRLETGGATVGECVSLIDR 1104
            R+LDSL + D+YN + QGL    ++    D     L+    LLDEM  + +  T R+   +VDAAA T +   +  ++     +G +  + +        P+D  R A   + L   P D R  D++ A AF+G VG     + L   +  DFD   P +  LA A A   DI +GG   S+ V+AGL RL   D  R+ R E+ AFL  YL GLPCF F+PNVLEAL+M E  P ++    +    G  + LVWLL+ VA E+L H + IV+DPRQ+  F+ L R++  L    D  A      + V+WAF++A  LLR +  + + LR+R+E+  ATVG+CV+ +++
Sbjct:   79 RILDSLPEADKYNTLAQGLFRRVLNDKSPDARQSSLQEGWTLLDEMRQKALKATPRTFSLLVDAAAVTNDAEAMKRSLELATGSGLSVVYGQADKGWEGSPVDAGRLASVTESLTDMPEDSRSKDVVVASAFMGYVGTGVGAETLGDYIYGDFDEIYPTVALLALAAAGVYDIVKGGGVVSKSVVAGLKRLLVDDKERQCRVESAAFLVAYLLGLPCFCFRPNVLEALKMAED-PRIRMDLLT--PAGIDKLLVWLLAGVAAENLQHPECIVADPRQSDAFVKLMRDKDYLKGVDDETAS-----LRVKWAFHKATNLLRKHRRVHDELRRRMESKAATVGDCVTFLEK 419          
BLAST of jgi.p|Trimin1|354141 vs. uniprot
Match: W7U4H7_9STRA (Uncharacterized protein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U4H7_9STRA)

HSP 1 Score: 201 bits (512), Expect = 9.850e-56
Identity = 128/360 (35.56%), Postives = 195/360 (54.17%), Query Frame = 1
Query:   61 SKSFDRVLDSLSDQDRYNAVLQGLAGIAVSSSGK-------------DRFVELLKLLDEMADRNIGCTTRSGGAVVDAAASTAEVAKVATAMSKLRRTGAAQKFSRELTRLAPLPLDERRRARALKDLVPTPSDDRGGDLMHAGAFLGVVGFDFAGDGLAPVLDFDATVPAILSLATAGAVALDIFQGGAERSRRVLAGLSRLFTRDVSRESRAEAGAFLAGYLTGLPCFAFKPNVLEALRMVEGMPELKEAFQSGGAGGAHRTLVWLLSAVAGEHLTHRQLIVSDPRQATTFLLLARERGLLPSCGDAAADAEDDEMAVRWAFNEARELLRDNEGMFEALRQRLETGGATVGECVSLID 1101
            S  +D ++D+LSD ++YN +LQ  A   V   GK             + F  L KL++EM D+++  T +S  A++DAA+ + ++  +   +   RR G ++ F+R +  L P P    R A    DL P PSD R  +L    A L VVG   + + + P+L  D T  +++    A     D+ Q   +     LAG++RLF RD  R++  +A  FL+ YL GLPCF F PNV+EA+RM   +P   E   S    G +R LV+LL+ VA E   + QL+ SD RQA   L +   RG          +  ++E+ + WA+ EA+ LLR +  + E L+QR+E+GGATVG+CV+L++
Sbjct:  151 SSQYDELMDNLSDDEKYNILLQSRASSLVQLLGKKGRGMGGNSRSTSEAFTPLYKLVEEMTDKDMRITLKSFAALIDAASLSRDLNVIQECLLLARRNGVSRAFARSVGTLNPPP--PLRAASDRYDLSPVPSDARTSELAAGVAALTVVGGALSVEAVGPLLHADTTAASVVLGGAAVMGVWDLTQRKGQELTLALAGINRLFLRDPERDAHVQAATFLSAYLLGLPCFCFSPNVMEAVRMTAQVPAFAETLSS--TAGLNRLLVYLLAPVAVEEANYAQLMASDARQARALLQVFMGRGEA-----RGQEGREEEVLLPWAYEEAKRLLRSHSALLERLKQRMESGGATVGDCVALLE 501          
BLAST of jgi.p|Trimin1|354141 vs. uniprot
Match: A0A7S1XSQ6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XSQ6_9STRA)

HSP 1 Score: 179 bits (454), Expect = 1.930e-49
Identity = 111/296 (37.50%), Postives = 162/296 (54.73%), Query Frame = 1
Query:  232 SGGAVVDAAASTAEVAKVATAMSKLRRTGAAQKFSRELTRLAPLPLDERRRARALKDLVPTPSDDRGGDLMHAGAFLGVVGFDFAGDGLAPVLD-----FDATVPAILSLATAGAVALDIFQGGAERSRRVLAGLSRLFTRDVSRESRAEAGAFLAGYLTGLPCFAFKPNVLEALRMVEGMPELKEAFQSGGAGGAHRTLVWLLSAVAGEHLTHRQLIVSDPRQATTFLLLARERGLLPSCGDAAADAEDDEM-AVRWAFNEARELLRDNEGMFEALRQRLETGGATVGECVSLID 1101
            + GAV+D AA+T     V   +  LR  G A  +     RL PLP +  RR R L+ L P PSDDR  +L  + AF+G  G     +   P  D         +P  +   +A A  +DI+    +    + +GLSRLF +D  R++R E+ + + GYL GLPCFAF+P+V EAL +++      +      A   +R LVWLL+ VAGE   + QL+ SDPRQA  FL L R RG+     D AA + D+    V+WA+ EAR+L+R NE + + + +R+ET   +VG+C ++ D
Sbjct:    6 AAGAVLDGAAATGTPLSVLRVLDALRPLGQATAYGGAAARLTPLPSNPERRRRTLEGLAPLPSDDRLKELWLSLAFMGYCGVGVGLEAAIPFTDDPNLLHSGLLPDAMLALSAAAAGIDIWGRQGKTLLELRSGLSRLFYKDSERDARCESASLVVGYLLGLPCFAFRPSVQEALALLDAEDAAMQEALPRNAATVNRLLVWLLAPVAGEDTKYSQLLASDPRQAAAFLSLVRARGV-----DGAAYSPDEAGDMVKWAYGEARKLVRTNEVLIDRISERMETMQGSVGDCAAICD 296          
BLAST of jgi.p|Trimin1|354141 vs. uniprot
Match: A0A7S2H157_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H157_9STRA)

HSP 1 Score: 180 bits (457), Expect = 1.600e-48
Identity = 128/363 (35.26%), Postives = 200/363 (55.10%), Query Frame = 1
Query:   76 RVLDSLSDQDRYNAVLQGLA--GIAVSSSGKDRFVELLKLLDEMADRNIGCTTRSGGAVVDAAASTAEVAKVATAMSKLRRTGAAQKFSRELTRLAPLPLDERRRARALKDLVPTPSDDRGGDLMHAGAFLGVVGFDFAGDGLAPVLDFDATVP-----------------AILSLATAGAVALDIF-QGGAERSRRVLAGLSRLFTRDVSRESRAEAGAFLAGYLTGLPCFAFKPNVLEALRMVEGMPELKEAFQSGGAGGAHRTLVWLLSAVAGEHLTHRQLIVSDPRQATTFLLLARERGLLPSCGDAAADAEDDEMAVRWAFNEARELLRDNEGMFEALRQRLETGGATVGECVSLIDR 1104
            + +D+LS  DRY+ VLQG+   G   +S+      ++  LL+EM         ++  A++D AA T ++  V  ++   RR G   ++S ++ ++ P PL ER+R +  + L   P D R  ++  A +F+  +        +AP+L  +  VP                 A++S++  G   L    Q G + +R +LAGL+RLFTRD++RE R EA +FL  Y+ GLP F+  P  LEA+++ +  P +KE+  +    G +R LVWLL++VA E+  HRQLIVSDPR A   L L RERG+         + EDD + VR A ++A  LL  +    +ALR+R+E+G ATVG CV L+++
Sbjct:   73 KAIDNLSAGDRYDFVLQGMLQQGKCDTSALTS---DVWPLLEEMTAAGKKMAIKTRAALLDVAAGTEDINAVDNSLKLSRRNGVLARYSMDVPKVLP-PLVERQRDKLDRTLPEVPIDSRELEVTFALSFVAFISASVGWGSIAPILHQEPLVPTWATFVAVLLLLADNFNALVSISKDGNFQLATLPQIGGDGTRVLLAGLNRLFTRDLTRECRCEAASFLVAYVLGLPSFSLNPTTLEAIKLTDVEP-IKESLMTDA--GINRILVWLLASVAVENAQHRQLIVSDPRNAPALLRLLRERGV------DVGEEEDDALRVRHALSQADLLLTRHGATLDALRERMESGAATVGNCVGLLEK 422          
BLAST of jgi.p|Trimin1|354141 vs. uniprot
Match: A0A6T7GWK4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A6T7GWK4_9STRA)

HSP 1 Score: 139 bits (349), Expect = 1.660e-34
Identity = 80/184 (43.48%), Postives = 115/184 (62.50%), Query Frame = 1
Query:  565 ALDIFQG----GAERSRRVLAGLSRLFTRDVSRESRAEAGAFLAGYLTGLPCFAFKPNVLEALRMVEGMPELKEAFQSGGAGGAHRTLVWLLSAVAGEHLTHRQLIVSDPRQATTFLLLARERGLLPSCGDAAADAEDDEMAVRWAFNEARELLRDNEGMFEALRQRLETGGATVGECVSLIDR 1104
            A+D  +G    G   ++ V AGL+RLFTRDV+RE + EA +F   YL G+P F+  PN LEA+++     E+   +Q+  A G  + LVWLL+AVA E   HRQLIVSDPRQA+  L L R+       G+ A   EDDE+ +R A ++A++LL+      E L QR+E+G  TVG CV+++++
Sbjct:   87 AMDAVRGRDDDGPSATQLVAAGLNRLFTRDVTRECQCEAASFTVAYLLGIPVFSLTPNALEAIKLTRDA-EVGVTYQT--ANGVSKLLVWLLAAVAIESNNHRQLIVSDPRQASALLKLLRKSAGEDEAGNTA---EDDELRLRLALSQAQDLLQKYPDALEQLSQRMESGAGTVGNCVAILEK 264          
BLAST of jgi.p|Trimin1|354141 vs. uniprot
Match: R1DV44_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DV44_EMIHU)

HSP 1 Score: 137 bits (344), Expect = 2.480e-33
Identity = 112/319 (35.11%), Postives = 156/319 (48.90%), Query Frame = 1
Query:  199 MADRNIGCTTRSGGAVVDAAASTAEVAKVATAMSKLRRTGAAQKFSRELTRLAPLPLDERRRARALKDLVPTPSDDRGGDLMHAGAFLGVV----GFDFAGDGLAPVLDFDATVPAILSLA--TAGAVALDIFQGGAERSRRVLAGLSRLFTRDVSRESRAEAGAFLAGYLTGLPCFAFKPNVLEALRMVEGMPELKEAFQSGGAGG----AHRTLVWLLSAVAGEHLTHRQLIVSDPRQATTFLLLARER----GLLPSCGDAAADAEDDEMAVRWAFNEARELLRDNEGMFEALRQRLETGGATVGECVSLIDRYRG 1113
            M+ R +     S  A++DA A +  +    +A+S  R  GA + F+    RL+  P        A+  L P P D R  ++  A  F GV+    G +F  D L PVL  +   P +  LA   AG    D +    E +  +  GLSRLF+RDV+RES AEA +F++GYL GLP  AF P    A+R VE +    +A      GG    A R LVWLLS VA E   +  + +S P  A  FL  AR R    G+    G      E DE+ +RWAF EA+ LL  N    +AL+ ++  G +  G  + L +R +G
Sbjct:    1 MSGRRLRVAPESCRALLDATARSDGLPLFLSALSACRANGACRAFAS--ARLSSRPS-------AVSALAPLPEDSRAAEVSFAVGFSGVLLALGGLEFV-DLLDPVLPGETEAPPLWLLAGGLAGVWGFDRYSRRGEGAASLARGLSRLFSRDVTRESTAEAASFVSGYLLGLPSCAFTPT---AVRPVELLAAASDALGGAAGGGQPRLADRVLVWLLSPVAAEVAAYGDVTISRPALAAQFLQAARRREASAGVDVQEGGWGEGEEADEVRLRWAFGEAKRLLAANAAAQQALQDQMAAGASVGGSVLLLEERLKG 306          
BLAST of jgi.p|Trimin1|354141 vs. uniprot
Match: A0A7S3XHA8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XHA8_HETAK)

HSP 1 Score: 130 bits (326), Expect = 1.850e-32
Identity = 71/149 (47.65%), Postives = 93/149 (62.42%), Query Frame = 1
Query:  316 GAAQKFSRELTRLAPLPLDERRRARALKDLVPTPSDDRGGDLMHAGAFLGVVGFDFAGDGLAPVLDFDATVPAILSLATAGAVALDIFQGGAERSRRVLAGLSRLFTRDVSRESRAEAGAFLAGYLTGLPCFAFKPNVLEALRMVEGMP 762
            GA Q F R L RL PLP+D   RA+ALK L P P D+R  ++  + AFLG+VG DF    +  +   D+ +P ++  A  G +A D+  G  + S  V AGL+RL  +D  RE+R EA AFL GY  GLPCF F+PNVLEALR+V+  P
Sbjct:    2 GAGQVFGRALPRLTPLPVDPAARAKALKGLEPVPQDERSKEVTASLAFLGLVGADFGWQTVGALQHSDSPLPQLVLAALFGGLAYDLVSGAGQVSGSVAAGLNRLLVKDFEREARCEAAAFLVGYALGLPCFPFRPNVLEALRLVQEAP 150          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354141 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A835Z355_9STRA4.380e-252100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LH72_ECTSI9.200e-10849.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A4D9D6H3_9STRA4.100e-5835.83Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A0G4G463_VITBC4.420e-5636.68Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
W7U4H7_9STRA9.850e-5635.56Uncharacterized protein n=3 Tax=Nannochloropsis ga... [more]
A0A7S1XSQ6_9STRA1.930e-4937.50Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2H157_9STRA1.600e-4835.26Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6T7GWK4_9STRA1.660e-3443.48Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
R1DV44_EMIHU2.480e-3335.11Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A7S3XHA8_HETAK1.850e-3247.65Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_211contigContig_211:125678..126982 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|354141|estExt_Genemark1.C_Ctg_2110020
Max annot lvl2759|Eukaryota
EggNOG OGs2DR9F@1|root,2S6DN@2759|Eukaryota
Evalue8.62e-110
Seed ortholog2880.D8LH72
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-24_000800.1
TranscriptId354463
TrackFilteredModels1
ProteinId354141
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354141gene_16540Tribonema minus UTEX_B_3156 geneContig_211 125678..126982 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16540_1exon_16540_1Tribonema minus UTEX_B_3156 exonContig_211 125678..126982 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16540CDS_16540Tribonema minus UTEX_B_3156 CDSContig_211 125678..126793 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_16540UTR3_16540Tribonema minus UTEX_B_3156 three_prime_UTRContig_211 126794..126982 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354141Trimin1|354141|estExt_Genemark1.C_Ctg_2110020Tribonema minus UTEX_B_3156 polypeptideContig_211 125678..126793 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16540 ID=mRNA_16540|Name=jgi.p|Trimin1|354141|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1305bp|location=Sequence derived from alignment at Contig_211:125678..126982+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTCCACCACCGACCGCACCAGCTCAGAGGCTAGCGCTGGCTCATC
TCTAGTGGTCAGCAAATCCTTTGACCGAGTCCTGGACAGCCTCAGCGACC
AGGACAGATACAACGCAGTGCTTCAGGGCTTAGCGGGCATTGCTGTCAGC
TCCAGCGGCAAGGACCGCTTCGTTGAGCTGCTCAAGCTTCTGGACGAGAT
GGCAGACCGCAACATCGGCTGCACCACCAGAAGCGGAGGCGCCGTTGTCG
ACGCCGCCGCCTCCACAGCCGAGGTCGCCAAGGTCGCCACCGCGATGTCC
AAGCTGCGCCGGACGGGAGCAGCACAAAAGTTTAGCCGCGAGCTGACGCG
CCTAGCACCGCTGCCGCTGGACGAACGACGGCGCGCGCGCGCGCTCAAAG
ACTTGGTCCCCACTCCATCGGATGATCGGGGAGGGGACCTCATGCACGCG
GGTGCCTTCCTCGGCGTCGTAGGCTTCGACTTCGCCGGCGATGGCCTTGC
GCCTGTGCTGGACTTTGACGCTACAGTGCCAGCCATTCTTTCGCTGGCAA
CAGCCGGTGCTGTGGCGCTGGACATCTTTCAGGGCGGCGCAGAGCGGTCA
CGGCGCGTGCTGGCGGGCCTGAGCCGGCTGTTCACGCGCGATGTCAGCCG
CGAGTCGCGCGCGGAGGCAGGCGCCTTTCTTGCGGGCTACCTCACAGGGC
TCCCATGCTTTGCCTTCAAGCCGAACGTGCTGGAGGCGCTGCGCATGGTG
GAGGGAATGCCGGAGCTAAAGGAGGCGTTCCAAAGCGGCGGCGCCGGCGG
CGCGCACAGGACACTCGTGTGGCTGCTCTCGGCCGTGGCGGGCGAGCACC
TCACGCACCGCCAGCTCATTGTGAGCGATCCGCGGCAGGCGACTACGTTC
CTGCTGCTGGCGCGAGAGAGGGGGTTGCTGCCGAGCTGTGGAGATGCTGC
TGCGGACGCAGAGGACGATGAGATGGCGGTGAGGTGGGCGTTCAACGAGG
CGCGTGAGCTGCTGAGGGATAATGAGGGGATGTTTGAGGCGCTGCGGCAG
CGGCTGGAGACGGGGGGTGCCACGGTGGGGGAGTGTGTGTCGCTCATAGA
CAGGTATAGGGGCTGATGCAACACACAGGCGTGAGTGATGCCATACATGA
ACTGCAACACAGTGTTGTTAAGAGATGTGCTGTAGCAGCAGCACTGGCCA
GATGTACACAGAGAATGCGCGTGGGATGTACTGGCAAAGTCAACTGTGGA
TAGCTTCCCCAGCGTATATCAATATCATATTGCCACTGGTGACACAGTGT
CGTCT
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protein sequence of jgi.p|Trimin1|354141

>Trimin1|354141|estExt_Genemark1.C_Ctg_2110020 ID=Trimin1|354141|estExt_Genemark1.C_Ctg_2110020|Name=jgi.p|Trimin1|354141|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=372bp
MSSTTDRTSSEASAGSSLVVSKSFDRVLDSLSDQDRYNAVLQGLAGIAVS
SSGKDRFVELLKLLDEMADRNIGCTTRSGGAVVDAAASTAEVAKVATAMS
KLRRTGAAQKFSRELTRLAPLPLDERRRARALKDLVPTPSDDRGGDLMHA
GAFLGVVGFDFAGDGLAPVLDFDATVPAILSLATAGAVALDIFQGGAERS
RRVLAGLSRLFTRDVSRESRAEAGAFLAGYLTGLPCFAFKPNVLEALRMV
EGMPELKEAFQSGGAGGAHRTLVWLLSAVAGEHLTHRQLIVSDPRQATTF
LLLARERGLLPSCGDAAADAEDDEMAVRWAFNEARELLRDNEGMFEALRQ
RLETGGATVGECVSLIDRYRG*
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mRNA from alignment at Contig_211:125678..126982+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16540 ID=mRNA_16540|Name=jgi.p|Trimin1|354141|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1305bp|location=Sequence derived from alignment at Contig_211:125678..126982+ (Tribonema minus UTEX_B_3156 )
ATGTCGTCCACCACCGACCGCACCAGCTCAGAGGCTAGCGCTGGCTCATC TCTAGTGGTCAGCAAATCCTTTGACCGAGTCCTGGACAGCCTCAGCGACC AGGACAGATACAACGCAGTGCTTCAGGGCTTAGCGGGCATTGCTGTCAGC TCCAGCGGCAAGGACCGCTTCGTTGAGCTGCTCAAGCTTCTGGACGAGAT GGCAGACCGCAACATCGGCTGCACCACCAGAAGCGGAGGCGCCGTTGTCG ACGCCGCCGCCTCCACAGCCGAGGTCGCCAAGGTCGCCACCGCGATGTCC AAGCTGCGCCGGACGGGAGCAGCACAAAAGTTTAGCCGCGAGCTGACGCG CCTAGCACCGCTGCCGCTGGACGAACGACGGCGCGCGCGCGCGCTCAAAG ACTTGGTCCCCACTCCATCGGATGATCGGGGAGGGGACCTCATGCACGCG GGTGCCTTCCTCGGCGTCGTAGGCTTCGACTTCGCCGGCGATGGCCTTGC GCCTGTGCTGGACTTTGACGCTACAGTGCCAGCCATTCTTTCGCTGGCAA CAGCCGGTGCTGTGGCGCTGGACATCTTTCAGGGCGGCGCAGAGCGGTCA CGGCGCGTGCTGGCGGGCCTGAGCCGGCTGTTCACGCGCGATGTCAGCCG CGAGTCGCGCGCGGAGGCAGGCGCCTTTCTTGCGGGCTACCTCACAGGGC TCCCATGCTTTGCCTTCAAGCCGAACGTGCTGGAGGCGCTGCGCATGGTG GAGGGAATGCCGGAGCTAAAGGAGGCGTTCCAAAGCGGCGGCGCCGGCGG CGCGCACAGGACACTCGTGTGGCTGCTCTCGGCCGTGGCGGGCGAGCACC TCACGCACCGCCAGCTCATTGTGAGCGATCCGCGGCAGGCGACTACGTTC CTGCTGCTGGCGCGAGAGAGGGGGTTGCTGCCGAGCTGTGGAGATGCTGC TGCGGACGCAGAGGACGATGAGATGGCGGTGAGGTGGGCGTTCAACGAGG CGCGTGAGCTGCTGAGGGATAATGAGGGGATGTTTGAGGCGCTGCGGCAG CGGCTGGAGACGGGGGGTGCCACGGTGGGGGAGTGTGTGTCGCTCATAGA CAGGTATAGGGGCTGATGCAACACACAGGCGTGAGTGATGCCATACATGA ACTGCAACACAGTGTTGTTAAGAGATGTGCTGTAGCAGCAGCACTGGCCA GATGTACACAGAGAATGCGCGTGGGATGTACTGGCAAAGTCAACTGTGGA TAGCTTCCCCAGCGTATATCAATATCATATTGCCACTGGTGACACAGTGT CGTCT
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Coding sequence (CDS) from alignment at Contig_211:125678..126982+

>mRNA_16540 ID=mRNA_16540|Name=jgi.p|Trimin1|354141|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1116bp|location=Sequence derived from alignment at Contig_211:125678..126982+ (Tribonema minus UTEX_B_3156 )
ATGTCGTCCACCACCGACCGCACCAGCTCAGAGGCTAGCGCTGGCTCATC
TCTAGTGGTCAGCAAATCCTTTGACCGAGTCCTGGACAGCCTCAGCGACC
AGGACAGATACAACGCAGTGCTTCAGGGCTTAGCGGGCATTGCTGTCAGC
TCCAGCGGCAAGGACCGCTTCGTTGAGCTGCTCAAGCTTCTGGACGAGAT
GGCAGACCGCAACATCGGCTGCACCACCAGAAGCGGAGGCGCCGTTGTCG
ACGCCGCCGCCTCCACAGCCGAGGTCGCCAAGGTCGCCACCGCGATGTCC
AAGCTGCGCCGGACGGGAGCAGCACAAAAGTTTAGCCGCGAGCTGACGCG
CCTAGCACCGCTGCCGCTGGACGAACGACGGCGCGCGCGCGCGCTCAAAG
ACTTGGTCCCCACTCCATCGGATGATCGGGGAGGGGACCTCATGCACGCG
GGTGCCTTCCTCGGCGTCGTAGGCTTCGACTTCGCCGGCGATGGCCTTGC
GCCTGTGCTGGACTTTGACGCTACAGTGCCAGCCATTCTTTCGCTGGCAA
CAGCCGGTGCTGTGGCGCTGGACATCTTTCAGGGCGGCGCAGAGCGGTCA
CGGCGCGTGCTGGCGGGCCTGAGCCGGCTGTTCACGCGCGATGTCAGCCG
CGAGTCGCGCGCGGAGGCAGGCGCCTTTCTTGCGGGCTACCTCACAGGGC
TCCCATGCTTTGCCTTCAAGCCGAACGTGCTGGAGGCGCTGCGCATGGTG
GAGGGAATGCCGGAGCTAAAGGAGGCGTTCCAAAGCGGCGGCGCCGGCGG
CGCGCACAGGACACTCGTGTGGCTGCTCTCGGCCGTGGCGGGCGAGCACC
TCACGCACCGCCAGCTCATTGTGAGCGATCCGCGGCAGGCGACTACGTTC
CTGCTGCTGGCGCGAGAGAGGGGGTTGCTGCCGAGCTGTGGAGATGCTGC
TGCGGACGCAGAGGACGATGAGATGGCGGTGAGGTGGGCGTTCAACGAGG
CGCGTGAGCTGCTGAGGGATAATGAGGGGATGTTTGAGGCGCTGCGGCAG
CGGCTGGAGACGGGGGGTGCCACGGTGGGGGAGTGTGTGTCGCTCATAGA
CAGGTATAGGGGCTGA
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