mRNA_16496 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|178039
Unique NamemRNA_16496
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|178039 vs. uniprot
Match: A0A836CJC7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJC7_9STRA)

HSP 1 Score: 317 bits (811), Expect = 1.660e-109
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 1 
Query:    1 KPTVSEVRALLFALARGGDTDEACAAVQRLRGMGALTAFDYEYALQAHEKPRHWSGALRLLSHMDKNNIKWTVRACSHALLTCGFAGRLNDAFQLIQQMHNHGMRPCAVNYLQLIGECRRNSNKVRDAGDSRGGSKQAMEMLQHMKQTGAKPDI 462
            KPTVSEVRALLFALARGGDTDEACAAVQRLRGMGALTAFDYEYALQAHEKPRHWSGALRLLSHMDKNNIKWTVRACSHALLTCGFAGRLNDAFQLIQQMHNHGMRPCAVNYLQLIGECRRNSNKVRDAGDSRGGSKQAMEMLQHMKQTGAKPDI
Sbjct:    1 KPTVSEVRALLFALARGGDTDEACAAVQRLRGMGALTAFDYEYALQAHEKPRHWSGALRLLSHMDKNNIKWTVRACSHALLTCGFAGRLNDAFQLIQQMHNHGMRPCAVNYLQLIGECRRNSNKVRDAGDSRGGSKQAMEMLQHMKQTGAKPDI 154
[Close]
BLAST of jgi.p|Trimin1|178039 vs. uniprot
Match: A0A835YZD3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZD3_9STRA)

HSP 1 Score: 255 bits (652), Expect = 3.140e-82
Identity = 126/154 (81.82%), Postives = 136/154 (88.31%), Query Frame = 1 
Query:    1 KPTVSEVRALLFALARGGDTDEACAAVQRLRGMGALTAFDYEYALQAHEKPRHWSGALRLLSHMDKNNIKWTVRACSHALLTCGFAGRLNDAFQLIQQMHNHGMRPCAVNYLQLIGECRRNSNKVRDAGDSRGGSKQAMEMLQHMKQTGAKPDI 462
            KPTVSE+RALL ALARGG   EA AAV RLRGMGALT FDYEYALQAHEKPRHWSGAL+LL HMD NNIKWTVRAC+HALLTCGFAGRLNDAFQLI+QM   G+ P + +YLQLIGEC R+S KVRDAGDSRGGSKQAME+LQ MKQTGAKPD+
Sbjct:   22 KPTVSEIRALLRALARGGGKGEAWAAVHRLRGMGALTVFDYEYALQAHEKPRHWSGALKLLKHMDANNIKWTVRACNHALLTCGFAGRLNDAFQLIRQMRERGINPASGDYLQLIGECVRSSKKVRDAGDSRGGSKQAMELLQLMKQTGAKPDV 175
[Close]
BLAST of jgi.p|Trimin1|178039 vs. uniprot
Match: A0A835Z0J2_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0J2_9STRA)

HSP 1 Score: 241 bits (614), Expect = 5.610e-75
Identity = 123/156 (78.85%), Postives = 134/156 (85.90%), Query Frame = 1 
Query:    1 KPTVSEVRALLFALARGGDTDEACAAVQRLRGMGALTAFDYEYALQAHEKPRHWSGALRLLSHMDKNNIKWTVRACSHALLTCGFAGRLNDAFQLIQQMHNHGMRPCAVNYLQLIGECRRNSN--KVRDAGDSRGGSKQAMEMLQHMKQTGAKPDI 462
            KPTVSE RALLFALAR G+T +A AAV RLRGMGALTAFDYEYALQAHEK RHWSGALRLLSHMDK NIKWT+RACSHALLT GFAGR+N A QL+ +M   G+ P   +YLQLIGECRR+S+  KVRDAGDSRGGSKQA+ MLQHMKQTG KPDI
Sbjct:   94 KPTVSENRALLFALARNGNTADAWAAVHRLRGMGALTAFDYEYALQAHEKSRHWSGALRLLSHMDKKNIKWTIRACSHALLTLGFAGRMNAALQLLDKMCERGLSPHPDSYLQLIGECRRSSSRQKVRDAGDSRGGSKQAVAMLQHMKQTGTKPDI 249
[Close]
BLAST of jgi.p|Trimin1|178039 vs. uniprot
Match: A0A835Z487_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z487_9STRA)

HSP 1 Score: 223 bits (567), Expect = 7.770e-67
Identity = 114/140 (81.43%), Postives = 120/140 (85.71%), Query Frame = 1 
Query:    1 KPTVSEVRALLFALARGGDTDEACAAVQRLRGMGALTAFDYEYALQAHEKPRHWSGALRLLSHMDKNNIKWTVRACSHALLTCGFAGRLNDAFQLIQQMHNHGMRPCAVNYLQLIGECRRNSNK--VRDAGDSRGGSKQA 414
            KPTVSE RALLFALARGG  DE  AAVQRL  +GALTAFDYE+ALQAHEKPRHWSGALRLLSHMDKNNIKWTVRACSHALLT GFAGRLN A QL+Q+MH  G+ P   NYLQLI ECRR+S K  VRDAGDSRGGSKQA
Sbjct:  173 KPTVSENRALLFALARGGGKDEVWAAVQRLSDLGALTAFDYEHALQAHEKPRHWSGALRLLSHMDKNNIKWTVRACSHALLTLGFAGRLNAALQLLQKMHQRGLSPDPANYLQLIAECRRHSKKALVRDAGDSRGGSKQA 312
[Close]
BLAST of jgi.p|Trimin1|178039 vs. uniprot
Match: A0A835YWR0_9STRA (PPR_long domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWR0_9STRA)

HSP 1 Score: 182 bits (462), Expect = 3.210e-56
Identity = 86/116 (74.14%), Postives = 96/116 (82.76%), Query Frame = 1 
Query:  115 FDYEYALQAHEKPRHWSGALRLLSHMDKNNIKWTVRACSHALLTCGFAGRLNDAFQLIQQMHNHGMRPCAVNYLQLIGECRRNSNKVRDAGDSRGGSKQAMEMLQHMKQTGAKPDI 462
            F+YEYALQA+EK  HWSGALRLLSHMD NN KWTVRACSHALL CGFAGRLNDAFQLIQQMH  G+ P + +YLQLI EC ++  KVR AGDSR GSKQAME+LQHM+Q G  P+ 
Sbjct:    1 FNYEYALQAYEKSSHWSGALRLLSHMDNNNTKWTVRACSHALLACGFAGRLNDAFQLIQQMHQRGISPTSGDYLQLIRECHQSDKKVRAAGDSRNGSKQAMELLQHMEQLGVMPNF 116
[Close]
BLAST of jgi.p|Trimin1|178039 vs. uniprot
Match: A0A835Z794_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z794_9STRA)

HSP 1 Score: 184 bits (467), Expect = 1.450e-55
Identity = 92/130 (70.77%), Postives = 104/130 (80.00%), Query Frame = 1 
Query:    1 KPTVSEVRALLFALARGGDTDEACAAVQRLRGMGALTAFDYEYALQAHEKPRHWSGALRLLSHMDKNNIKWTVRACSHALLTCGFAGRLNDAFQLIQQMHNHGMRPCAVNYLQLIGECRRNSNKVRDAGD 390
            KPTVSE RALL+ALAR G   EA AAV RLR +GALTA DYE+AL+AHEKP HWSGAL+LLS MDKN I WTVRACSHALL CG AGRLNDA QL+++M   GMRP  V++L LIGECRR+  K+R A D
Sbjct:   25 KPTVSENRALLYALARDGGPAEAWAAVHRLRVLGALTAVDYEHALRAHEKPHHWSGALKLLSDMDKNEITWTVRACSHALLICGVAGRLNDALQLVEEMRKRGMRPGPVDFLHLIGECRRSRRKLRAAED 154
[Close]
BLAST of jgi.p|Trimin1|178039 vs. uniprot
Match: A0A836CK07_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK07_9STRA)

HSP 1 Score: 112 bits (281), Expect = 5.360e-26
Identity = 72/159 (45.28%), Postives = 93/159 (58.49%), Query Frame = 1 
Query:    1 KPTVSEVRALLFALARGGDTDEACAAVQRLRGMGALTAFDYEYALQAHEKPRHWSGALRLLSHMDKNNIKWTVRACSHALLTCGFAGRLNDAFQLIQQMHNHGMRPCA--VNYLQLIGECRRNSNKVRDA---GDSRGGSKQAMEMLQHMKQTGAKPDI 462
            KPT  E RALL  +A       A  A++RL+G GA+ + DYE A+QAHEK   +  A+ LL  M +   +WT RACS  L   G AGRLN A QLI++M   GM P +  V++  LI  C R+  +V D    GDSRGGSK AM +LQ M+     PD+
Sbjct:  123 KPTALEARALLATMAYNHQPRHAMTALRRLQGSGAMISHDYELAIQAHEKGLPFE-AMELLREMKREGFRWTHRACSTVLQASGKAGRLNAALQLIKEMQGVGMSPNSLRVDFQILICNCVRDE-RVDDETRPGDSRGGSKMAMTLLQLMRDARLAPDV 279
[Close]
BLAST of jgi.p|Trimin1|178039 vs. uniprot
Match: A0A836CED0_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CED0_9STRA)

HSP 1 Score: 102 bits (253), Expect = 2.140e-23
Identity = 63/128 (49.22%), Postives = 81/128 (63.28%), Query Frame = 1 
Query:   76 AVQRLRGMGALTAFDYEYALQAHEKPRHWSGALRLLSHMDKNNIKWTVRACSHALLTCGFAGRLNDAFQLIQQMHNHGMRPCAVNYLQLIGECRRNSNKVRDAGDSRGGSKQAMEMLQHMKQTGAKPD 459
            A +RL+G+ ALTA DYE A+ AH    H  GAL+LL  M+K  I WT  AC  AL  CG AG+ N A QLI ++   G+     NYL LI +C R+ +    AGDSRGGS+QA+E LQ M++TG  P+
Sbjct:    3 AFKRLQGLAALTAKDYERAIIAHTD--HSPGALQLLHEMEKA-ICWTETACGAALRACGKAGQHNTARQLIDKVRKLGITVNGGNYLTLIQQCVRSKDSTH-AGDSRGGSEQALEWLQLMEETGHMPE 126
[Close]
BLAST of jgi.p|Trimin1|178039 vs. uniprot
Match: A0A836CEM5_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEM5_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 2.290e-19
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = 1 
Query:  190 MDKNNIKWTVRACSHALLTCGFAGRLNDAFQLIQQMHNHGMRPCAVNYLQLIGECRRNSNKVRDAGDSRGGSKQAMEMLQHMKQTGAKPDI 462
            M+++  +WT  AC   L+ CG AGRLNDA QLI  M NH + P    YL LI +C RNS     AGDSRGGSK+A+E+LQ MK  G  P+I
Sbjct:    1 MEQDGFRWTQVACGAVLVACGKAGRLNDAVQLIDNMRNHRVSPDGRTYLTLIQQCVRNSASTH-AGDSRGGSKRALELLQLMKDAGPVPNI 90
[Close]
BLAST of jgi.p|Trimin1|178039 vs. uniprot
Match: A0A835Z5Z3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5Z3_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 7.560e-17
Identity = 45/91 (49.45%), Postives = 56/91 (61.54%), Query Frame = 1 
Query:  190 MDKNNIKWTVRACSHALLTCGFAGRLNDAFQLIQQMHNHGMRPCAVNYLQLIGECRRNSNKVRDAGDSRGGSKQAMEMLQHMKQTGAKPDI 462
            M++  + WT RACS  L   G AGRLN A QLI +M   G+ P  ++YL LIG C R       AGD RGGS+QA+E+LQ M+  G  PDI
Sbjct:    1 MEREGLAWTHRACSTVLQAFGKAGRLNAALQLIGEMEQRGISPDHIDYLTLIGACARGKKNGTRAGD-RGGSEQALELLQRMQDKGPVPDI 90
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|178039 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A836CJC7_9STRA1.660e-109100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YZD3_9STRA3.140e-8281.82Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z0J2_9STRA5.610e-7578.85PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A835Z487_9STRA7.770e-6781.43PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A835YWR0_9STRA3.210e-5674.14PPR_long domain-containing protein (Fragment) n=1 ... [more]
A0A835Z794_9STRA1.450e-5570.77Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CK07_9STRA5.360e-2645.28PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A836CED0_9STRA2.140e-2349.22PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A836CEM5_9STRA2.290e-1952.75PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A835Z5Z3_9STRA7.560e-1749.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_164contigContig_164:174651..175115 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|178039|e_gw1.164.26.1
BRITEko00000,ko03016,ko03029
KEGG koko:K17710
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0097159,GO:1901360,GO:1901363
DescriptionPentatricopeptide repeat-containing protein At5g02830
COG categoryS
Max annot lvl35493|Streptophyta
EggNOG OGsKOG4197@1|root,KOG4197@2759|Eukaryota,37JEI@33090|Viridiplantae,3G9F0@35493|Streptophyta
Evalue0.000979
Seed ortholog161934.XP_010696356.1
Hectar predicted targeting categoryother localisation
TranscriptId178361
TrackFilteredModels1
ProteinId178039
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|178039gene_16496Tribonema minus UTEX_B_3156 geneContig_164 174651..175115 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16496_1exon_16496_1Tribonema minus UTEX_B_3156 exonContig_164 174651..175115 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16496CDS_16496Tribonema minus UTEX_B_3156 CDSContig_164 174651..175115 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|178039Trimin1|178039|e_gw1.164.26.1Tribonema minus UTEX_B_3156 polypeptideContig_164 174651..175115 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16496 ID=mRNA_16496|Name=jgi.p|Trimin1|178039|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=465bp|location=Sequence derived from alignment at Contig_164:174651..175115- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AAGCCGACAGTCTCTGAGGTCAGGGCTCTACTGTTTGCGCTGGCCCGGGG
CGGTGATACGGACGAGGCCTGTGCTGCTGTGCAACGATTGCGTGGCATGG
GTGCTCTAACTGCTTTTGATTACGAGTACGCCCTCCAGGCGCACGAGAAG
CCCCGCCACTGGTCTGGAGCCTTGAGGCTGTTAAGCCACATGGACAAGAA
CAACATCAAATGGACAGTCCGTGCCTGCAGCCACGCATTACTCACATGTG
GGTTTGCAGGGCGCTTAAATGACGCGTTCCAGCTGATACAGCAAATGCAC
AACCACGGCATGCGCCCTTGCGCTGTTAATTACCTCCAGCTCATTGGCGA
GTGTCGCCGCAACAGCAACAAGGTGCGCGATGCTGGGGACAGCAGAGGTG
GTAGCAAGCAGGCAATGGAGATGCTGCAGCACATGAAGCAGACAGGCGCA
AAGCCCGATATTTGA
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protein sequence of jgi.p|Trimin1|178039

>Trimin1|178039|e_gw1.164.26.1 ID=Trimin1|178039|e_gw1.164.26.1|Name=jgi.p|Trimin1|178039|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=155bp
KPTVSEVRALLFALARGGDTDEACAAVQRLRGMGALTAFDYEYALQAHEK
PRHWSGALRLLSHMDKNNIKWTVRACSHALLTCGFAGRLNDAFQLIQQMH
NHGMRPCAVNYLQLIGECRRNSNKVRDAGDSRGGSKQAMEMLQHMKQTGA
KPDI*
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mRNA from alignment at Contig_164:174651..175115-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16496 ID=mRNA_16496|Name=jgi.p|Trimin1|178039|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=465bp|location=Sequence derived from alignment at Contig_164:174651..175115- (Tribonema minus UTEX_B_3156 )
AAGCCGACAGTCTCTGAGGTCAGGGCTCTACTGTTTGCGCTGGCCCGGGG
CGGTGATACGGACGAGGCCTGTGCTGCTGTGCAACGATTGCGTGGCATGG
GTGCTCTAACTGCTTTTGATTACGAGTACGCCCTCCAGGCGCACGAGAAG
CCCCGCCACTGGTCTGGAGCCTTGAGGCTGTTAAGCCACATGGACAAGAA
CAACATCAAATGGACAGTCCGTGCCTGCAGCCACGCATTACTCACATGTG
GGTTTGCAGGGCGCTTAAATGACGCGTTCCAGCTGATACAGCAAATGCAC
AACCACGGCATGCGCCCTTGCGCTGTTAATTACCTCCAGCTCATTGGCGA
GTGTCGCCGCAACAGCAACAAGGTGCGCGATGCTGGGGACAGCAGAGGTG
GTAGCAAGCAGGCAATGGAGATGCTGCAGCACATGAAGCAGACAGGCGCA
AAGCCCGATATTTGA
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Coding sequence (CDS) from alignment at Contig_164:174651..175115-

>mRNA_16496 ID=mRNA_16496|Name=jgi.p|Trimin1|178039|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=465bp|location=Sequence derived from alignment at Contig_164:174651..175115- (Tribonema minus UTEX_B_3156 )
AAGCCGACAGTCTCTGAGGTCAGGGCTCTACTGTTTGCGCTGGCCCGGGG
CGGTGATACGGACGAGGCCTGTGCTGCTGTGCAACGATTGCGTGGCATGG
GTGCTCTAACTGCTTTTGATTACGAGTACGCCCTCCAGGCGCACGAGAAG
CCCCGCCACTGGTCTGGAGCCTTGAGGCTGTTAAGCCACATGGACAAGAA
CAACATCAAATGGACAGTCCGTGCCTGCAGCCACGCATTACTCACATGTG
GGTTTGCAGGGCGCTTAAATGACGCGTTCCAGCTGATACAGCAAATGCAC
AACCACGGCATGCGCCCTTGCGCTGTTAATTACCTCCAGCTCATTGGCGA
GTGTCGCCGCAACAGCAACAAGGTGCGCGATGCTGGGGACAGCAGAGGTG
GTAGCAAGCAGGCAATGGAGATGCTGCAGCACATGAAGCAGACAGGCGCA
AAGCCCGATATTTGA
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