mRNA_16495 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|178058
Unique NamemRNA_16495
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|178058 vs. uniprot
Match: A0A836CLZ3_9STRA (PPR_long domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLZ3_9STRA)

HSP 1 Score: 141 bits (355), Expect = 3.360e-40
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 1 
Query:    1 FTAVVDACGKAGDWSNASNVFQQMRLEGIEPDGGSWGALLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINCYATAKDPGKAEELLAEMVQSAAVKPNAISFNRCVQYAT 450
            FTAVVDACGKAGDWSNASNVFQQMRLEGIEPDGGSWGALLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINCYATAKDPGKAEELLAEMVQSAAVKPNAISFNRCVQYAT
Sbjct:    1 FTAVVDACGKAGDWSNASNVFQQMRLEGIEPDGGSWGALLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINCYATAKDPGKAEELLAEMVQSAAVKPNAISFNRCVQYAT 150
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BLAST of jgi.p|Trimin1|178058 vs. uniprot
Match: A0A836CDU9_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDU9_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.450e-19
Identity = 57/143 (39.86%), Postives = 65/143 (45.45%), Query Frame = 1 
Query:    1 FTAVVDACGKAGDWSNASNVFQQMRLEGIEPDGGSWGALLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINCYATAKDPGKAEELLAEMVQSAAVKPNAISFN 429
            FTAVVDACGKAGDW +A  VFQQM+LEGI+P   +WGALL                                                                     INCYAT KDPGKAEE+LAEM+QSAA+  +AISFN
Sbjct:   19 FTAVVDACGKAGDWIDACEVFQQMQLEGIKPSAPTWGALLNTIGTAGHVEKMLAKYKEMCTIGPRPTVITMTTLLDHAGAGEVDIFNDLWREMHYRQLVPDVKSYNTR-INCYATVKDPGKAEEVLAEMIQSAAITLDAISFN 160
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BLAST of jgi.p|Trimin1|178058 vs. uniprot
Match: A0A836CEL9_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEL9_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.030e-16
Identity = 105/144 (72.92%), Postives = 115/144 (79.86%), Query Frame = 1 
Query:    1 FTAVVDACGKAGDWSNASNVFQQMRLEGIEPDGGSWGALLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINCYATAKDPGKAEELLAEMVQSAAVKPNAISFNR 432
            FTAVVDACGKAGDW +A++VFQQM+LEGIE          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                I+CYATAKDPGKAEE+L EM+QSAA+ P+AISF+R
Sbjct:   13 FTAVVDACGKAGDWIDATDVFQQMQLEGIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLHDRQLVPDVKCYNTRIHCYATAKDPGKAEEVLGEMIQSAAITPDAISFSR 156
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BLAST of jgi.p|Trimin1|178058 vs. uniprot
Match: A0A835Z0L4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0L4_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.160e-14
Identity = 36/40 (90.00%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:  328 INCYATAKDPGKAEELLAEMVQSAAVKPNAISFNRCVQYA 447
            INC+ATAKDPGKAEE+LAEMVQS AVKPN ISFNRCVQYA
Sbjct:  165 INCFATAKDPGKAEEVLAEMVQSTAVKPNVISFNRCVQYA 204
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BLAST of jgi.p|Trimin1|178058 vs. uniprot
Match: A0A836CE74_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE74_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 2.580e-10
Identity = 30/38 (78.95%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:  328 INCYATAKDPGKAEELLAEMVQSAAVKPNAISFNRCVQ 441
            INCYATAK P KAEE+LAEMVQSA +KP+AI+F+RCVQ
Sbjct:  167 INCYATAKQPDKAEEVLAEMVQSATIKPDAITFSRCVQ 204
[Close]
BLAST of jgi.p|Trimin1|178058 vs. uniprot
Match: A0A835Z1B2_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1B2_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.030e-9
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:  328 INCYATAKDPGKAEELLAEMVQSAAVKPNAISFNRCVQ 441
            INCYATA+ P KAE +LAEMVQSAAVKP+AISFNRCV+
Sbjct:  387 INCYATARQPDKAEGVLAEMVQSAAVKPDAISFNRCVK 424
[Close]
BLAST of jgi.p|Trimin1|178058 vs. uniprot
Match: A0A836CJV6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJV6_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.470e-9
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 1 
Query:  328 INCYATAKDPGKAEELLAEMVQSAAVKPNAISF 426
            INCYA AKDPGKAEE+LAEM++SAAVKPNAI F
Sbjct:   52 INCYAMAKDPGKAEEVLAEMIKSAAVKPNAIIF 84
[Close]
BLAST of jgi.p|Trimin1|178058 vs. uniprot
Match: A0A835YWP6_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWP6_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 5.630e-9
Identity = 39/146 (26.71%), Postives = 57/146 (39.04%), Query Frame = 1 
Query:    1 FTAVVDACGKAGDWSNASNVFQQMRLEGIEPDGGSWGALLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINCYATAKDPGKAEELLAEMVQSAAVKPNAISFNRCV 438
            ++A ++ CGKAGDW++A ++F+QM+L+G+  +   W ALL                                                                      NCYA   +P KAE +LAEM QS   KP+AI++NR V
Sbjct:   60 YSAAINVCGKAGDWTSAVHIFEQMQLQGVHANISCWTALLDALGRAKKVDQMLATYREMLASGQEPDTVAFGTLLAHAGAAGESGIAEDIRREMQRLKIAPNTWTYCALTNCYAVTGEPEKAEAVLAEMRQSTMTKPSAIAYNRYV 205
[Close]
BLAST of jgi.p|Trimin1|178058 vs. uniprot
Match: A0A836CJ97_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ97_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 9.490e-9
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 1 
Query:  328 INCYATAKDPGKAEELLAEMVQSAAVKPNAISF 426
            INCYATAKDP KAEE+LAEMVQSA +KPNAI+F
Sbjct:   82 INCYATAKDPRKAEEVLAEMVQSATIKPNAITF 114
[Close]
BLAST of jgi.p|Trimin1|178058 vs. uniprot
Match: A0A835Z0J2_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0J2_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.250e-8
Identity = 47/135 (34.81%), Postives = 57/135 (42.22%), Query Frame = 1 
Query:    1 FTAVVDACGKAGDWSNASNVFQQMRLEGIEPDGGSWGALLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINCYATAKDPGKAEELLAEMVQSAAV 405
            FTAVVDACGKAGDW +A +VFQQM+LE + P+  S+  L                                                                      INCYATAK+PG+AEE+LAEM+QSAAV
Sbjct:  252 FTAVVDACGKAGDWIDALDVFQQMQLE-LVPNVRSYNTL----------------------------------------------------------------------INCYATAKNPGEAEEVLAEMIQSAAV 315
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|178058 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A836CLZ3_9STRA3.360e-40100.00PPR_long domain-containing protein (Fragment) n=1 ... [more]
A0A836CDU9_9STRA2.450e-1939.86PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A836CEL9_9STRA1.030e-1672.92PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A835Z0L4_9STRA1.160e-1490.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CE74_9STRA2.580e-1078.95PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A835Z1B2_9STRA1.030e-981.58PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A836CJV6_9STRA2.470e-984.85Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835YWP6_9STRA5.630e-926.71PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A836CJ97_9STRA9.490e-984.85Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z0J2_9STRA1.250e-834.81PPR_long domain-containing protein n=1 Tax=Tribone... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_164contigContig_164:173643..174647 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|178058|e_gw1.164.33.1
Hectar predicted targeting categoryother localisation
TranscriptId178380
TrackFilteredModels1
ProteinId178058
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|178058gene_16495Tribonema minus UTEX_B_3156 geneContig_164 173643..174647 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|178058Trimin1|178058|e_gw1.164.33.1Tribonema minus UTEX_B_3156 polypeptideContig_164 173643..174647 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16495_2exon_16495_2Tribonema minus UTEX_B_3156 exonContig_164 173643..174014 -
exon_16495_1exon_16495_1Tribonema minus UTEX_B_3156 exonContig_164 174567..174647 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16495CDS_16495Tribonema minus UTEX_B_3156 CDSContig_164 174567..174647 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16495 ID=mRNA_16495|Name=jgi.p|Trimin1|178058|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=453bp|location=Sequence derived from alignment at Contig_164:173643..174647- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TTCACAGCCGTTGTGGATGCTTGCGGAAAGGCAGGGGACTGGAGTAACGC
CTCCAACGTCTTTCAGCAAATGCGGCTTGAGGGCATTGAGCCAGATGGCG
GGAGCTGGGGTGCACTTCTGAATGCCATGGGCAAGGCGGGTCAGGTGGAA
AAGATGCTGGCAAAGCATAAAGAGATGTGTGCAACTGGCGGACAGCCAAA
TGTAGTCACCATGACCACTTTGCTAGATCATGCTGGTGCAGCGGGGGAGA
TGGACACTGTCAAGGACATTTGGAGGGAGATTCATGATTGCCAAGTACTC
CCCAATGTGCAGTGCTACAACACACTGATCAATTGCTATGCAACGGCAAA
AGATCCGGGCAAGGCGGAGGAATTGCTTGCGGAGATGGTCCAGTCTGCTG
CCGTCAAGCCGAATGCCATCAGCTTCAATAGGTGCGTGCAATATGCAACA
TAG
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protein sequence of jgi.p|Trimin1|178058

>Trimin1|178058|e_gw1.164.33.1 ID=Trimin1|178058|e_gw1.164.33.1|Name=jgi.p|Trimin1|178058|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=151bp
FTAVVDACGKAGDWSNASNVFQQMRLEGIEPDGGSWGALLNAMGKAGQVE
KMLAKHKEMCATGGQPNVVTMTTLLDHAGAAGEMDTVKDIWREIHDCQVL
PNVQCYNTLINCYATAKDPGKAEELLAEMVQSAAVKPNAISFNRCVQYAT
*
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mRNA from alignment at Contig_164:173643..174647-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16495 ID=mRNA_16495|Name=jgi.p|Trimin1|178058|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1005bp|location=Sequence derived from alignment at Contig_164:173643..174647- (Tribonema minus UTEX_B_3156 )
TTCACAGCCGTTGTGGATGCTTGCGGAAAGGCAGGGGACTGGAGTAACGC
CTCCAACGTCTTTCAGCAAATGCGGCTTGAGGTAAACACTTAGTGTCATT
TATTTGATTGTGTGGGTCTGTAGACACCTGAGCAATTGAATAACCTGACT
TGACCAAATAATTGTTATAGCAGGCTGCGACAGCACGCACAGGACTGCTA
GGCCCTACCTATTGATTTTCTACGATTCTAAGGCATTGCGTTTTACAGGC
TCAAGTAAGTTGGTCACACGCGCATGATTGACAGTTGAGTGCGGATGGTT
GGACATGTTCGCGCTTACCGCTGTTTGGTGCCATTGACCAGTCACTACCA
AAGATGCAGCCAGTGGTTATATCATGTAGCACCACTATGTAGCACCACTA
ATATAGAAGTACAATACGCTCAAGGCTTGAAAGCACTACATGCAAAAATA
AGAGTGGTAGAATAGATTTGCAATGTCAAGTACGCTGCGCCTCAGATTCT
TGATCCTGATGCCAGTAACTTGAAGCAGCCGTATGGTAGTTTGGTGACCC
CTGCTGTCAACATTTACATGATGCAAGACAGACTGCAGCATGATTGATAA
TTATTGCTGCCGTCGACCTGCTTGTTGCTGCAGGGCATTGAGCCAGATGG
CGGGAGCTGGGGTGCACTTCTGAATGCCATGGGCAAGGCGGGTCAGGTGG
AAAAGATGCTGGCAAAGCATAAAGAGATGTGTGCAACTGGCGGACAGCCA
AATGTAGTCACCATGACCACTTTGCTAGATCATGCTGGTGCAGCGGGGGA
GATGGACACTGTCAAGGACATTTGGAGGGAGATTCATGATTGCCAAGTAC
TCCCCAATGTGCAGTGCTACAACACACTGATCAATTGCTATGCAACGGCA
AAAGATCCGGGCAAGGCGGAGGAATTGCTTGCGGAGATGGTCCAGTCTGC
TGCCGTCAAGCCGAATGCCATCAGCTTCAATAGGTGCGTGCAATATGCAA
CATAG
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Coding sequence (CDS) from alignment at Contig_164:173643..174647-

>mRNA_16495 ID=mRNA_16495|Name=jgi.p|Trimin1|178058|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=453bp|location=Sequence derived from alignment at Contig_164:173643..174647- (Tribonema minus UTEX_B_3156 )
TTCACAGCCGTTGTGGATGCTTGCGGAAAGGCAGGGGACTGGAGTAACGC
CTCCAACGTCTTTCAGCAAATGCGGCTTGAGGGCATTGAGCCAGATGGCG
GGAGCTGGGGTGCACTTCTGAATGCCATGGGCAAGGCGGGTCAGGTGGAA
AAGATGCTGGCAAAGCATAAAGAGATGTGTGCAACTGGCGGACAGCCAAA
TGTAGTCACCATGACCACTTTGCTAGATCATGCTGGTGCAGCGGGGGAGA
TGGACACTGTCAAGGACATTTGGAGGGAGATTCATGATTGCCAAGTACTC
CCCAATGTGCAGTGCTACAACACACTGATCAATTGCTATGCAACGGCAAA
AGATCCGGGCAAGGCGGAGGAATTGCTTGCGGAGATGGTCCAGTCTGCTG
CCGTCAAGCCGAATGCCATCAGCTTCAATAGGTGCGTGCAATATGCAACA
TAG
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