mRNA_1648 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|157808
Unique NamemRNA_1648
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|157808 vs. uniprot
Match: A0A835YTU6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTU6_9STRA)

HSP 1 Score: 323 bits (828), Expect = 9.680e-111
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 1 
Query:    1 MAHKRREAVSALTFLVKSKHQPELNLFHLVLRALSKGPSMMSNALIVLDLMRQCGQAPDTMACNLAIRACGGSHALEHADRVXXXXXXXXXXXXXXXXXXXXXXXXXXXDWQRALELFADMETNYPGLVTVHMWNRVLGVLVIANQPQEAAAKAAAMADRGVPYDAVTYSLLLGAHALLGDHTKIDMLMSEMWEAG 588
            MAHKRREAVSALTFLVKSKHQPELNLFHLVLRALSKGPSMMSNALIVLDLMRQCGQAPDTMACNLAIRACGGSHALEHADRVXXXXXXXXXXXXXXXXXXXXXXXXXXXDWQRALELFADMETNYPGLVTVHMWNRVLGVLVIANQPQEAAAKAAAMADRGVPYDAVTYSLLLGAHALLGDHTKIDMLMSEMWEAG
Sbjct:    1 MAHKRREAVSALTFLVKSKHQPELNLFHLVLRALSKGPSMMSNALIVLDLMRQCGQAPDTMACNLAIRACGGSHALEHADRVXXXXXXXXXXXXXXXXXXXXXXXXXXXDWQRALELFADMETNYPGLVTVHMWNRVLGVLVIANQPQEAAAKAAAMADRGVPYDAVTYSLLLGAHALLGDHTKIDMLMSEMWEAG 196
[Close]
BLAST of jgi.p|Trimin1|157808 vs. uniprot
Match: A0A835YPB5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPB5_9STRA)

HSP 1 Score: 151 bits (381), Expect = 5.050e-40
Identity = 86/189 (45.50%), Postives = 115/189 (60.85%), Query Frame = 1 
Query:   22 AVSALTFLVKSKHQPELNLFHLVLRALSKGPSMMSNALIVLDLMRQCGQAPDTMACNLAIRACGGSHALEHADRVXXXXXXXXXXXXXXXXXXXXXXXXXXXDWQRALELFADMETNYPGLVTVHMWNRVLGVLVIANQPQEAAAKAAAMADRGVPYDAVTYSLLLGAHALLGDHTKIDMLMSEMWEAG 588
            AVS L+ LV+  HQP +N FH VL  LS+   ++S +LIV+ LMRQCG   DT A + A+ ACGG HA++HAD++                            WQRAL+LFA++E +YP LVTV MWNR+L VL+   QP++A AK A M +RG+  ++ T+S LLGAHA L D T+I  L S +  AG
Sbjct:   77 AVSYLSGLVERGHQPNINAFHFVLEPLSR-KRILSTSLIVVALMRQCGTPLDTKAYHYALGACGGQHAMQHADQLLREMKAAGVAADQHTFAAAAHACIVSKKWQRALDLFAEIEADYPHLVTVGMWNRLLRVLIRTGQPEQAIAKGAEMVERGLKLNSETFSYLLGAHARLADQTQITALTSAVRAAG 264
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BLAST of jgi.p|Trimin1|157808 vs. uniprot
Match: A0A835YYG3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYG3_9STRA)

HSP 1 Score: 141 bits (356), Expect = 6.580e-39
Identity = 72/84 (85.71%), Postives = 77/84 (91.67%), Query Frame = 1 
Query:  337 RALELFADMETNYPGLVTVHMWNRVLGVLVIANQPQEAAAKAAAMADRGVPYDAVTYSLLLGAHALLGDHTKIDMLMSEMWEAG 588
            RALELFADME ++P LV+VHMWNR+L VLVI NQPQ AAAKAAAMA+RGVPYDAVTYSLLLGAHALL DHTKIDMLMSEM EAG
Sbjct:   13 RALELFADMEAHHPDLVSVHMWNRLLSVLVITNQPQAAAAKAAAMAERGVPYDAVTYSLLLGAHALLADHTKIDMLMSEMREAG 96
[Close]
BLAST of jgi.p|Trimin1|157808 vs. uniprot
Match: A0A836CEM6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEM6_9STRA)

HSP 1 Score: 147 bits (371), Expect = 1.690e-37
Identity = 74/86 (86.05%), Postives = 79/86 (91.86%), Query Frame = 1 
Query:  331 WQRALELFADMETNYPGLVTVHMWNRVLGVLVIANQPQEAAAKAAAMADRGVPYDAVTYSLLLGAHALLGDHTKIDMLMSEMWEAG 588
            WQRALELFADME ++P LV+VHMWNR+L VLVI NQPQ AAAKAAAMA+RGVPYDAVTYSLLLGAHALL DHTKIDMLMSEM EAG
Sbjct:  329 WQRALELFADMEAHHPDLVSVHMWNRLLSVLVITNQPQAAAAKAAAMAERGVPYDAVTYSLLLGAHALLADHTKIDMLMSEMREAG 414
[Close]
BLAST of jgi.p|Trimin1|157808 vs. uniprot
Match: A0A835YM11_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM11_9STRA)

HSP 1 Score: 113 bits (282), Expect = 5.780e-28
Identity = 67/156 (42.95%), Postives = 87/156 (55.77%), Query Frame = 1 
Query:   37 TFLVKSKHQPELNLFHLVLRALSKGPSMMSNALIVLDLMRQCGQAPDTMACNLAIRACGGSHALEHADRVXXXXXXXXXXXXXXXXXXXXXXXXXXXDWQRALELFADMETNYPGLVTVHMWNRVLGVLVIANQPQEAAAKAAAMADRGVPYDAVT 504
            T + +  HQP L LF+L+L  L +  +  + A  V  LMRQ    PDT A N A+RACGG HA++HAD+V                           DWQRAL+ FA+ME NYP LVTV  WN+VLGVLV+  +P+ A  K A MA+R +  +A T
Sbjct:   26 TSIERGGHQPSLQLFYLILGVLVERRNRPAAA-SVRALMRQSSTPPDTPAYNFALRACGGKHAMQHADQVLREMKEAGVAANIGTFSAAFQACWHSRDWQRALDRFAEMEANYPHLVTVQTWNQVLGVLVVGGKPELAITKVAEMANRKLKLNAGT 180
[Close]
BLAST of jgi.p|Trimin1|157808 vs. uniprot
Match: A0A836CAH1_9STRA (PPR_long domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAH1_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.110e-27
Identity = 74/182 (40.66%), Postives = 95/182 (52.20%), Query Frame = 1 
Query:   43 LVKSKHQPELNLFHLVLRALSKGPSMMSNALIVLDLMRQCGQAPDTMACNLAIRACGGSHALEHADRVXXXXXXXXXXXXXXXXXXXXXXXXXXXDWQRALELFADMETNYPGLVTVHMWNRVLGVLVIANQPQEAAAKAAAMADRGVPYDAVTYSLLLGAHALLGDHTKIDMLMSEMWEAG 588
            +V+  H+P ++LFHLVL AL+        A  VL LM+Q G  PD  A NLA+RA  G   L+ AD +                           D  RALELF  ME + P  V VH WN +L  ++ +  PQ A  KAA MA R +  DA T SLLL AHA LGD T++D L+S+M  +G
Sbjct:    1 MVEGGHRPHISLFHLVLEALAAKRDA-REAWRVLALMKQSGTQPDVTAYNLALRAQNG---LQSADSLLKEMVEAGVAPDRGTYTAMLRACRMSRDITRALELFTQMEASNPSFVDVHTWNMLLHAIIASGNPQSALQKAAKMAQRSLAPDAFTCSLLLAAHAALGDQTEVDGLVSQMSASG 178
[Close]
BLAST of jgi.p|Trimin1|157808 vs. uniprot
Match: A0A835YGC8_9STRA (PPR_long domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGC8_9STRA)

HSP 1 Score: 110 bits (274), Expect = 5.960e-27
Identity = 71/182 (39.01%), Postives = 94/182 (51.65%), Query Frame = 1 
Query:   43 LVKSKHQPELNLFHLVLRALSKGPSMMSNALIVLDLMRQCGQAPDTMACNLAIRACGGSHALEHADRVXXXXXXXXXXXXXXXXXXXXXXXXXXXDWQRALELFADMETNYPGLVTVHMWNRVLGVLVIANQPQEAAAKAAAMADRGVPYDAVTYSLLLGAHALLGDHTKIDMLMSEMWEAG 588
            +VK  H+P +++FHLVL+AL+        A  VL +MRQ G  PD  A + A+R      +L+ AD +                           D  RALELFA+ME   P  V VH WN +L  +V +  PQ A  KAA M  RG+  DA T+SLLL AHA LGD  K+D  +S+M  +G
Sbjct:    1 MVKGGHRPHISIFHLVLKALASKHGG-KEAWHVLAIMRQSGTQPDATAYSWALRQ---QVSLQAADALLKEMVTAGVAPDSGTYIAMLRMCRISRDMPRALELFAEMEATDPSFVNVHTWNLLLLAIVASGNPQSALGKAAEMTQRGLAPDAATHSLLLAAHAALGDQAKVDSAVSQMRASG 178
[Close]
BLAST of jgi.p|Trimin1|157808 vs. uniprot
Match: A0A836C9W1_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9W1_9STRA)

HSP 1 Score: 101 bits (251), Expect = 8.000e-22
Identity = 63/154 (40.91%), Postives = 78/154 (50.65%), Query Frame = 1 
Query:  127 NALIVLDLMRQCGQAPDTMACNLAIRACGGSHALEHADRVXXXXXXXXXXXXXXXXXXXXXXXXXXXDWQRALELFADMETNYPGLVTVHMWNRVLGVLVIANQPQEAAAKAAAMADRGVPYDAVTYSLLLGAHALLGDHTKIDMLMSEMWEAG 588
            + L +L LMRQ G  PD  A NLA+RA      L+ AD +                           D  RALELFA ME      V VHMWN +L  ++ +  PQ A  KA  M  RGV  D++TYSLLL AHA LGD  K+D L+S+M  +G
Sbjct:  128 HVLHLLALMRQSGTKPDVTAYNLALRA---QTRLQSADWLLKEMVDAGVAPDRGTYMAMLRACRMSRDMPRALELFAQMEATNLSFVNVHMWNMLLRAIIASGDPQSALQKATEMTQRGVAPDSITYSLLLAAHAALGDEAKVDSLVSQMSASG 278
[Close]
BLAST of jgi.p|Trimin1|157808 vs. uniprot
Match: A0A836C956_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C956_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 4.690e-20
Identity = 47/87 (54.02%), Postives = 60/87 (68.97%), Query Frame = 1 
Query:  328 DWQRALELFADMETNYPGLVTVHMWNRVLGVLVIANQPQEAAAKAAAMADRGVPYDAVTYSLLLGAHALLGDHTKIDMLMSEMWEAG 588
            DWQRAL +F +ME  +P LVTV MWN +L VL+   +P+   AK A MA  G+  + +TYS LLGAHA LGD TK+D ++SEM  AG
Sbjct:   35 DWQRALNIFLEMEAQHPKLVTVSMWNELLAVLLNGGKPELLVAKVAEMAKCGLKLNTLTYSRLLGAHAALGDRTKVDSVISEMQAAG 121
[Close]
BLAST of jgi.p|Trimin1|157808 vs. uniprot
Match: A0A835YL26_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL26_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.010e-19
Identity = 67/182 (36.81%), Postives = 91/182 (50.00%), Query Frame = 1 
Query:   43 LVKSKHQPELNLFHLVLRALSKGPSMMSNALIVLDLMRQCGQAPDTMACNLAIRACGGSHALEHADRVXXXXXXXXXXXXXXXXXXXXXXXXXXXDWQRALELFADMETNYPGLVTVHMWNRVLGVLVIANQPQEAAAKAAAMADRGVPYDAVTYSLLLGAHALLGDHTKIDMLMSEMWEAG 588
            +VK  H+P ++LFHLVL A++        A  VL LMRQ G  PD  A N A+R+      L+ AD +                           ++Q      A  +   P  V VHMWN +L  ++ +  PQ A  KAA M  RG+  DAVT+SLLL AHA LGD T++D L+S+M  +G
Sbjct:    1 MVKCGHRPHISLFHLVLEAVAAKREA-REAWRVLALMRQSGTKPDVTAYNWALRS---QITLQSADSLLK-------------------------EFQMVDAGVAPGKVTDPSFVNVHMWNMLLHAIIASGNPQSALQKAAEMTQRGLAPDAVTHSLLLAAHAALGDQTEVDSLVSQMSASG 153
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|157808 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A835YTU6_9STRA9.680e-111100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835YPB5_9STRA5.050e-4045.50Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YYG3_9STRA6.580e-3985.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CEM6_9STRA1.690e-3786.05Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YM11_9STRA5.780e-2842.95Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CAH1_9STRA1.110e-2740.66PPR_long domain-containing protein (Fragment) n=1 ... [more]
A0A835YGC8_9STRA5.960e-2739.01PPR_long domain-containing protein (Fragment) n=1 ... [more]
A0A836C9W1_9STRA8.000e-2240.91PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A836C956_9STRA4.690e-2054.02Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835YL26_9STRA1.010e-1936.81Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_4contigContig_4:1078580..1079167 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|157808|e_gw1.4.213.1
Hectar predicted targeting categoryother localisation
TranscriptId158130
TrackFilteredModels1
ProteinId157808
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157808gene_1648Tribonema minus UTEX_B_3156 geneContig_4 1078580..1079167 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1648_1exon_1648_1Tribonema minus UTEX_B_3156 exonContig_4 1078580..1079167 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1648CDS_1648Tribonema minus UTEX_B_3156 CDSContig_4 1078580..1079167 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157808Trimin1|157808|e_gw1.4.213.1Tribonema minus UTEX_B_3156 polypeptideContig_4 1078580..1079167 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1648 ID=mRNA_1648|Name=jgi.p|Trimin1|157808|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=588bp|location=Sequence derived from alignment at Contig_4:1078580..1079167+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCACAAACGTCGCGAAGCAGTCAGTGCCCTCACTTTCCTCGTGAA
GTCTAAGCACCAGCCGGAACTCAACCTGTTTCATCTCGTTCTGAGAGCCT
TGAGCAAAGGGCCGAGCATGATGTCGAATGCGCTTATCGTCTTGGATCTC
ATGCGGCAGTGTGGCCAGGCCCCGGACACAATGGCGTGCAACCTTGCCAT
CCGTGCGTGCGGCGGCAGTCACGCCCTAGAGCATGCTGACCGGGTACTGC
GGACGATGGCGGAGGCAGGTGCGCCTCCCGACAAACACACGTTTAGTGCA
GCTCTCAGAGCCTGCTGGCACTCCCATGACTGGCAACGCGCTCTTGAGCT
CTTCGCTGACATGGAGACGAACTACCCCGGCTTGGTCACGGTACACATGT
GGAACCGGGTGCTGGGCGTTCTAGTGATTGCCAATCAGCCGCAGGAGGCA
GCAGCGAAGGCCGCGGCTATGGCGGACCGCGGAGTGCCGTACGATGCAGT
GACCTATTCCCTTTTGCTCGGTGCGCACGCCCTCCTCGGCGATCACACCA
AGATAGACATGCTCATGTCGGAAATGTGGGAGGCAGGC
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protein sequence of jgi.p|Trimin1|157808

>Trimin1|157808|e_gw1.4.213.1 ID=Trimin1|157808|e_gw1.4.213.1|Name=jgi.p|Trimin1|157808|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=196bp
MAHKRREAVSALTFLVKSKHQPELNLFHLVLRALSKGPSMMSNALIVLDL
MRQCGQAPDTMACNLAIRACGGSHALEHADRVLRTMAEAGAPPDKHTFSA
ALRACWHSHDWQRALELFADMETNYPGLVTVHMWNRVLGVLVIANQPQEA
AAKAAAMADRGVPYDAVTYSLLLGAHALLGDHTKIDMLMSEMWEAG
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mRNA from alignment at Contig_4:1078580..1079167+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1648 ID=mRNA_1648|Name=jgi.p|Trimin1|157808|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=588bp|location=Sequence derived from alignment at Contig_4:1078580..1079167+ (Tribonema minus UTEX_B_3156 )
ATGGCGCACAAACGTCGCGAAGCAGTCAGTGCCCTCACTTTCCTCGTGAA
GTCTAAGCACCAGCCGGAACTCAACCTGTTTCATCTCGTTCTGAGAGCCT
TGAGCAAAGGGCCGAGCATGATGTCGAATGCGCTTATCGTCTTGGATCTC
ATGCGGCAGTGTGGCCAGGCCCCGGACACAATGGCGTGCAACCTTGCCAT
CCGTGCGTGCGGCGGCAGTCACGCCCTAGAGCATGCTGACCGGGTACTGC
GGACGATGGCGGAGGCAGGTGCGCCTCCCGACAAACACACGTTTAGTGCA
GCTCTCAGAGCCTGCTGGCACTCCCATGACTGGCAACGCGCTCTTGAGCT
CTTCGCTGACATGGAGACGAACTACCCCGGCTTGGTCACGGTACACATGT
GGAACCGGGTGCTGGGCGTTCTAGTGATTGCCAATCAGCCGCAGGAGGCA
GCAGCGAAGGCCGCGGCTATGGCGGACCGCGGAGTGCCGTACGATGCAGT
GACCTATTCCCTTTTGCTCGGTGCGCACGCCCTCCTCGGCGATCACACCA
AGATAGACATGCTCATGTCGGAAATGTGGGAGGCAGGC
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Coding sequence (CDS) from alignment at Contig_4:1078580..1079167+

>mRNA_1648 ID=mRNA_1648|Name=jgi.p|Trimin1|157808|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=588bp|location=Sequence derived from alignment at Contig_4:1078580..1079167+ (Tribonema minus UTEX_B_3156 )
ATGGCGCACAAACGTCGCGAAGCAGTCAGTGCCCTCACTTTCCTCGTGAA
GTCTAAGCACCAGCCGGAACTCAACCTGTTTCATCTCGTTCTGAGAGCCT
TGAGCAAAGGGCCGAGCATGATGTCGAATGCGCTTATCGTCTTGGATCTC
ATGCGGCAGTGTGGCCAGGCCCCGGACACAATGGCGTGCAACCTTGCCAT
CCGTGCGTGCGGCGGCAGTCACGCCCTAGAGCATGCTGACCGGGTACTGC
GGACGATGGCGGAGGCAGGTGCGCCTCCCGACAAACACACGTTTAGTGCA
GCTCTCAGAGCCTGCTGGCACTCCCATGACTGGCAACGCGCTCTTGAGCT
CTTCGCTGACATGGAGACGAACTACCCCGGCTTGGTCACGGTACACATGT
GGAACCGGGTGCTGGGCGTTCTAGTGATTGCCAATCAGCCGCAGGAGGCA
GCAGCGAAGGCCGCGGCTATGGCGGACCGCGGAGTGCCGTACGATGCAGT
GACCTATTCCCTTTTGCTCGGTGCGCACGCCCTCCTCGGCGATCACACCA
AGATAGACATGCTCATGTCGGAAATGTGGGAGGCAGGC
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