mRNA_16475 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|177970
Unique NamemRNA_16475
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|177970 vs. uniprot
Match: A0A835Z7Z3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7Z3_9STRA)

HSP 1 Score: 385 bits (990), Expect = 3.220e-135
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 1 
Query:    1 MNIQGASITESIRVDSASNKGSVFDAISLICPANTRQANFEALRSLRESCPELSRKMVHLRINGKGKSTPCADAATLVEIVWALPGKAARDFRRSSANLVCRVLSGDLALVEQIEARHHVLQGSGDGGHLALAFLVADTANTITPAHHTQLALNDMPAGFAFLTDVARAEIASSMVPDELAKRKRDDQAERQKRSLQTSLST 606
            MNIQGASITESIRVDSASNKGSVFDAISLICPANTRQANFEALRSLRESCPELSRKMVHLRINGKGKSTPCADAATLVEIVWALPGKAARDFRRSSANLVCRVLSGDLALVEQIEARHHVLQGSGDGGHLALAFLVADTANTITPAHHTQLALNDMPAGFAFLTDVARAEIASSMVPDELAKRKRDDQAERQKRSLQTSLST
Sbjct:    1 MNIQGASITESIRVDSASNKGSVFDAISLICPANTRQANFEALRSLRESCPELSRKMVHLRINGKGKSTPCADAATLVEIVWALPGKAARDFRRSSANLVCRVLSGDLALVEQIEARHHVLQGSGDGGHLALAFLVADTANTITPAHHTQLALNDMPAGFAFLTDVARAEIASSMVPDELAKRKRDDQAERQKRSLQTSLST 202
[Close]
BLAST of jgi.p|Trimin1|177970 vs. uniprot
Match: A0A835YYW8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYW8_9STRA)

HSP 1 Score: 197 bits (501), Expect = 2.810e-59
Identity = 112/194 (57.73%), Postives = 135/194 (69.59%), Query Frame = 1 
Query:   16 ASITESIRVDSASNKGSVFDAISLICP---ANTRQANFEALRSLRESCPELSRKMVHLRINGKGKSTPCADAATLVEIVWALPGKAARDFRRSSANLVCRVLSGDLALVEQIEARHHVLQGSGDGGHLALAFLVADTANTITPAHHTQLALNDMPAGFAFLTDVARAEIASSMVPDELAKRKRDDQAERQKRSL 588
            A  T SIRVDSASNKGSV D I L+ P   +N     F  L S     P+++    HLRINGKGK TPCADA TLVEIVW+LPGKAARDFRR SAN VCR+L GDL+LV++IE+RHH LQ + +GGH    FL++DT +  +    TQLAL  MPAGFAFL + ++ ++A SMV DELAKRKR D AE  +R  
Sbjct:    4 ADFTTSIRVDSASNKGSVIDVIRLVIPNLPSNQASTTFARLAS---EMPDVASSCCHLRINGKGKPTPCADAKTLVEIVWSLPGKAARDFRRESANTVCRLLGGDLSLVQEIESRHHALQKT-EGGHAVQGFLMSDTLSAASQESDTQLAL--MPAGFAFLDETSKQQVALSMVHDELAKRKRADDAEWHRRKF 191
[Close]
BLAST of jgi.p|Trimin1|177970 vs. uniprot
Match: A0A835YZ27_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ27_9STRA)

HSP 1 Score: 137 bits (345), Expect = 5.000e-38
Identity = 74/134 (55.22%), Postives = 98/134 (73.13%), Query Frame = 1 
Query:   16 ASITESIRVDSASNKGSVFDAISLICPANTRQANFEALRSLRESCPELSRKMVHLRINGKGKSTPCADAATLVEIVWALPGKAARDFRRSSANLVCRVLSGDLALVEQIEARHHVLQGSGDGGHLALAFLVADT 417
            ++IT +IRVD+A+N+GSV D I L+ P  T       L +L +   +++    HLRIN KGK TPCADA TLVEIVW+LPGKAAR+FRR+SA  VCRVL GDL++V++IE RHH LQ + +GG  A AF++AD+
Sbjct:    4 SNITAAIRVDTATNQGSVIDVIRLVNPNPTSGNAANVLANLTK---DVTLNYSHLRINAKGKPTPCADAKTLVEIVWSLPGKAAREFRRTSAKTVCRVLGGDLSIVQEIEKRHHTLQQT-EGGRAAQAFMLADS 133
[Close]
BLAST of jgi.p|Trimin1|177970 vs. uniprot
Match: A0A835YWG0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWG0_9STRA)

HSP 1 Score: 140 bits (353), Expect = 4.730e-37
Identity = 77/148 (52.03%), Postives = 100/148 (67.57%), Query Frame = 1 
Query:   16 ASITESIRVDSASNKGSVFDAISLICPANTRQANFEALRSLRESCPELSRKMVHLRINGKGKSTPCADAATLVEIVWALPGKAARDFRRSSANLVCRVLSGDLALVEQIEARHHVLQGSGDGGHLALAFLVAD-TANTITPAHHTQLA 456
            A++T +IRVD+A+NKGSV D I ++   N   A+    R L +    +  +   LRINGKGK T CADA TLVEIVW+LPGKAAR+FRR+SA  VCRVL GDL++V ++EARHH LQ +G GG  A  FL+ D ++ +  PA    LA
Sbjct:    4 ANVTAAIRVDTATNKGSVIDVIKIVQSCNASDASTYCKRLLDDVGTHIGTRCTQLRINGKGKLTFCADAKTLVEIVWSLPGKAAREFRRTSAKTVCRVLGGDLSIVREVEARHHALQSTG-GGRAAQDFLLGDESSGSEAPAEERTLA 150
[Close]
BLAST of jgi.p|Trimin1|177970 vs. uniprot
Match: A0A835Z3L4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3L4_9STRA)

HSP 1 Score: 139 bits (351), Expect = 8.180e-37
Identity = 72/136 (52.94%), Postives = 97/136 (71.32%), Query Frame = 1 
Query:   22 ITESIRVDSASNKGSVFDAISLICPANTRQANFEALRSLRESCPELSRKMVHLRINGKGKSTPCADAATLVEIVWALPGKAARDFRRSSANLVCRVLSGDLALVEQIEARHHVLQGSGDGGHLALAFLVADTANTI 429
            +T +IRVD+A+NKGSV D I ++   N   A+    R L +   +L  + V LRIN KG+ TPCADA TLVEIVW+LPGKAAR+FRR SA  VCRVL GDL++V+++EARHH LQ + +GG  A  FL+ D+ +++
Sbjct:    6 VTAAIRVDTATNKGSVIDVIKIVQSCNASDASTYCKRLLDDIGTDLGTRCVQLRINSKGRLTPCADAKTLVEIVWSLPGKAAREFRRQSAANVCRVLGGDLSIVQEVEARHHALQQT-EGGRAAQKFLLEDSESSV 140
[Close]
BLAST of jgi.p|Trimin1|177970 vs. uniprot
Match: A0A835Z1M0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1M0_9STRA)

HSP 1 Score: 137 bits (344), Expect = 8.330e-36
Identity = 77/134 (57.46%), Postives = 92/134 (68.66%), Query Frame = 1 
Query:   16 ASITESIRVDSASNKGSVFDAISLICPANTRQANFEALRSLRESCPELSRKMVHLRINGKGKSTPCADAATLVEIVWALPGKAARDFRRSSANLVCRVLSGDLALVEQIEARHHVLQGSGDGGHLALAFLVADT 417
            A+    IRVD+A+  GSV D I+LI P  +      A ++L     +L  K   LRINGKGK TPCADA TLVE+VW+LPGKAARDFRR SA  VCRVL GDL L ++IEARHH LQGS D G  A AF++AD+
Sbjct:    4 ANFNTCIRVDNATQMGSVIDVINLINPYESN-----APKTLTRLPQDLIAKCSQLRINGKGKLTPCADAQTLVEVVWSLPGKAARDFRRESAKAVCRVLGGDLTLADEIEARHHALQGS-DEGQAAQAFMLADS 131
[Close]
BLAST of jgi.p|Trimin1|177970 vs. uniprot
Match: A0A835YX96_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX96_9STRA)

HSP 1 Score: 134 bits (338), Expect = 1.040e-34
Identity = 73/139 (52.52%), Postives = 94/139 (67.63%), Query Frame = 1 
Query:   16 ASITESIRVDSASNKGSVFDAISLICPANTRQANFEALRSLRESCPELSRKMVHLRINGKGKSTPCADAATLVEIVWALPGKAARDFRRSSANLVCRVLSGDLALVEQIEARHHVLQGSGDGGHLALAFLVADTANTIT 432
            A++T SIRVD A+  GSV D I ++ P   R A  +A+  L      L R + H+RINGKGK TPCA A  LVE+V+ LPGKAARDFRR+SA  VCRVL GDL++V ++EARHH LQ + +GG  A  FL+ D  ++ T
Sbjct:    4 ANVTASIRVDRATGLGSVIDVIRMVNPNQERTAATKAVAYLTADDETLRRSIQHVRINGKGKPTPCASARVLVEVVFLLPGKAARDFRRASATTVCRVLGGDLSIVGEVEARHHALQQT-EGGRAAQEFLLRDDESSAT 141
[Close]
BLAST of jgi.p|Trimin1|177970 vs. uniprot
Match: A0A835YUW0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUW0_9STRA)

HSP 1 Score: 131 bits (329), Expect = 2.380e-34
Identity = 85/193 (44.04%), Postives = 112/193 (58.03%), Query Frame = 1 
Query:   22 ITESIRVDSASNKGSVFDAISLICPANTRQANFEALRSLRESCPELSRKMVHLRINGKGKSTPCADAATLVEIVWALPGKAARDFRRSSANLVCRVLSGDLALVEQIEARHHVLQGSGDGGHLALAFLVADTANTITPAHHTQLALNDMPAGFAFLTDVARAEIASSMVPDELAKRKRDDQAERQKRSLQTSL 600
            IT +IRVD+A+  GSV D I+++ P N   +    L  L +  P+L  K   L+INGKG  TP ADA TL+EIVW LPGKAAR+FRR+SA  VCRVL GDL+L E+IEA HH  QGS D G  A A ++AD+ ++     H       M +       +A AE  S+     + +R  D + E QKR    +L
Sbjct:    6 ITATIRVDTATQLGSVMDVIAMVDPGNPSLS----LSRLIKGVPDLIEKCKKLKINGKGNVTPVADAKTLIEIVWLLPGKAAREFRRTSAKTVCRVLGGDLSLAEEIEAHHHAQQGS-DEGQAAQALMLADSDDS----DHGFPVAKRMKSSLPDELQLATAEQRSAYYDCWMVQRGADRKMELQKRQFDNTL 189
[Close]
BLAST of jgi.p|Trimin1|177970 vs. uniprot
Match: A0A835YNN1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNN1_9STRA)

HSP 1 Score: 125 bits (315), Expect = 1.360e-33
Identity = 70/127 (55.12%), Postives = 89/127 (70.08%), Query Frame = 1 
Query:   22 ITESIRVDSASNKGSVFDAISLICPANTRQANFEALRSLRESCPELSRKMVHLRINGKGKSTPCADAATLVEIVWALPGKAARDFRRSSANLVCRVLSGDLALVEQIEARHHVLQGSGDGGHLALAF 402
            IT +IRVD+A+NKGSV D I L+ P    +        L    PE++ +   LRINGKGK +P ADA TLVEIV++LPGKAAR+FRR+SA  VCRVL GDL++V++IE RHH LQ + +GG  A AF
Sbjct:    6 ITATIRVDAATNKGSVIDVIRLVHPDIESKHASTYFTRLTTEIPEIATQCGLLRINGKGKPSPVADAKTLVEIVFSLPGKAAREFRRTSAKTVCRVLGGDLSIVQEIEQRHHTLQQT-EGGRAAQAF 131
[Close]
BLAST of jgi.p|Trimin1|177970 vs. uniprot
Match: D8LP49_ECTSI (EsV-1-210/211 paralog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP49_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 1.940e-31
Identity = 77/183 (42.08%), Postives = 105/183 (57.38%), Query Frame = 1 
Query:   34 IRVDSASNKGSVFDAISLICPANTRQANFEALRSLRESCPELSRKMVHLRINGKGKSTPCADAATLVEIVWALPGKAARDFRRSSANLVCRVLSGDLALVEQIEARHHVLQGSGDGGHLALAFLVADTANTITPAHHTQLALNDMPAGFAFLTDVARAEIASSMVPDELAKRKRDDQAERQKR 582
            IR D  + KGSV D I ++   ++  AN  A   L ++ PEL  +    ++NGKG  TP ADA TL+EIVW LPGK A  FRR S+  VCR+L GDL+LV +IEARH  LQ S + G     FL+      +          + MPAGF +L++  RA++A  M+  +L   K  DQA ++KR
Sbjct:   12 IRADKQTKKGSVMDTIRMVLRCDSSNAN-TAFGRLLQAHPELGSRCTRSKLNGKGNETPVADAKTLIEIVWLLPGKKAHSFRRQSSEKVCRLLGGDLSLVSEIEARHATLQ-STEQGRETQEFLLHGREEAVET-------FDGMPAGFKYLSETDRAQVAKRMIDQQL---KAGDQALKRKR 182
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|177970 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z7Z3_9STRA3.220e-135100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YYW8_9STRA2.810e-5957.73Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YZ27_9STRA5.000e-3855.22Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835YWG0_9STRA4.730e-3752.03Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z3L4_9STRA8.180e-3752.94Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z1M0_9STRA8.330e-3657.46Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YX96_9STRA1.040e-3452.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YUW0_9STRA2.380e-3444.04Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YNN1_9STRA1.360e-3355.12Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
D8LP49_ECTSI1.940e-3142.08EsV-1-210/211 paralog n=1 Tax=Ectocarpus siliculos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_162contigContig_162:292591..293199 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|177970|e_gw1.162.25.1
Max annot lvl2880.D8LP49|-
EggNOG OGs2EUDG@1|root,2SWJG@2759|Eukaryota
Evalue3.19e-32
Seed ortholog2880.D8LP49
Hectar predicted targeting categoryother localisation
TranscriptId178292
TrackFilteredModels1
ProteinId177970
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177970gene_16475Tribonema minus UTEX_B_3156 geneContig_162 292591..293199 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16475_1exon_16475_1Tribonema minus UTEX_B_3156 exonContig_162 292591..293199 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16475CDS_16475Tribonema minus UTEX_B_3156 CDSContig_162 292591..293199 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177970Trimin1|177970|e_gw1.162.25.1Tribonema minus UTEX_B_3156 polypeptideContig_162 292591..293199 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16475 ID=mRNA_16475|Name=jgi.p|Trimin1|177970|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=609bp|location=Sequence derived from alignment at Contig_162:292591..293199- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAATATTCAAGGTGCCAGCATCACGGAGAGCATCCGCGTAGATAGTGC
TAGTAATAAGGGAAGTGTATTTGATGCGATCAGCTTGATTTGTCCTGCTA
ACACTCGCCAGGCAAACTTTGAAGCGCTACGCTCTCTCAGAGAGAGTTGT
CCGGAGCTGTCAAGAAAAATGGTACACCTCAGAATCAATGGCAAAGGAAA
ATCAACGCCCTGTGCAGACGCTGCAACCTTGGTGGAAATTGTGTGGGCCC
TACCAGGCAAAGCTGCTCGTGATTTCCGCCGGAGCAGCGCCAACCTTGTG
TGCCGTGTTCTCAGTGGTGACCTGGCGTTGGTCGAGCAGATTGAGGCGCG
CCACCACGTGCTGCAGGGGTCCGGAGACGGGGGGCATTTGGCACTGGCGT
TCCTTGTCGCTGACACTGCTAACACTATCACCCCTGCTCACCATACCCAG
TTGGCCCTCAATGACATGCCGGCCGGATTTGCCTTCCTCACCGACGTTGC
TAGGGCCGAGATTGCGTCTTCCATGGTTCCTGATGAACTGGCAAAGCGCA
AAAGGGACGACCAAGCCGAGAGGCAAAAACGCTCGTTACAGACATCACTT
TCTACATGA
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protein sequence of jgi.p|Trimin1|177970

>Trimin1|177970|e_gw1.162.25.1 ID=Trimin1|177970|e_gw1.162.25.1|Name=jgi.p|Trimin1|177970|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=203bp
MNIQGASITESIRVDSASNKGSVFDAISLICPANTRQANFEALRSLRESC
PELSRKMVHLRINGKGKSTPCADAATLVEIVWALPGKAARDFRRSSANLV
CRVLSGDLALVEQIEARHHVLQGSGDGGHLALAFLVADTANTITPAHHTQ
LALNDMPAGFAFLTDVARAEIASSMVPDELAKRKRDDQAERQKRSLQTSL
ST*
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mRNA from alignment at Contig_162:292591..293199-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16475 ID=mRNA_16475|Name=jgi.p|Trimin1|177970|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=609bp|location=Sequence derived from alignment at Contig_162:292591..293199- (Tribonema minus UTEX_B_3156 )
ATGAATATTCAAGGTGCCAGCATCACGGAGAGCATCCGCGTAGATAGTGC
TAGTAATAAGGGAAGTGTATTTGATGCGATCAGCTTGATTTGTCCTGCTA
ACACTCGCCAGGCAAACTTTGAAGCGCTACGCTCTCTCAGAGAGAGTTGT
CCGGAGCTGTCAAGAAAAATGGTACACCTCAGAATCAATGGCAAAGGAAA
ATCAACGCCCTGTGCAGACGCTGCAACCTTGGTGGAAATTGTGTGGGCCC
TACCAGGCAAAGCTGCTCGTGATTTCCGCCGGAGCAGCGCCAACCTTGTG
TGCCGTGTTCTCAGTGGTGACCTGGCGTTGGTCGAGCAGATTGAGGCGCG
CCACCACGTGCTGCAGGGGTCCGGAGACGGGGGGCATTTGGCACTGGCGT
TCCTTGTCGCTGACACTGCTAACACTATCACCCCTGCTCACCATACCCAG
TTGGCCCTCAATGACATGCCGGCCGGATTTGCCTTCCTCACCGACGTTGC
TAGGGCCGAGATTGCGTCTTCCATGGTTCCTGATGAACTGGCAAAGCGCA
AAAGGGACGACCAAGCCGAGAGGCAAAAACGCTCGTTACAGACATCACTT
TCTACATGA
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Coding sequence (CDS) from alignment at Contig_162:292591..293199-

>mRNA_16475 ID=mRNA_16475|Name=jgi.p|Trimin1|177970|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=609bp|location=Sequence derived from alignment at Contig_162:292591..293199- (Tribonema minus UTEX_B_3156 )
ATGAATATTCAAGGTGCCAGCATCACGGAGAGCATCCGCGTAGATAGTGC
TAGTAATAAGGGAAGTGTATTTGATGCGATCAGCTTGATTTGTCCTGCTA
ACACTCGCCAGGCAAACTTTGAAGCGCTACGCTCTCTCAGAGAGAGTTGT
CCGGAGCTGTCAAGAAAAATGGTACACCTCAGAATCAATGGCAAAGGAAA
ATCAACGCCCTGTGCAGACGCTGCAACCTTGGTGGAAATTGTGTGGGCCC
TACCAGGCAAAGCTGCTCGTGATTTCCGCCGGAGCAGCGCCAACCTTGTG
TGCCGTGTTCTCAGTGGTGACCTGGCGTTGGTCGAGCAGATTGAGGCGCG
CCACCACGTGCTGCAGGGGTCCGGAGACGGGGGGCATTTGGCACTGGCGT
TCCTTGTCGCTGACACTGCTAACACTATCACCCCTGCTCACCATACCCAG
TTGGCCCTCAATGACATGCCGGCCGGATTTGCCTTCCTCACCGACGTTGC
TAGGGCCGAGATTGCGTCTTCCATGGTTCCTGATGAACTGGCAAAGCGCA
AAAGGGACGACCAAGCCGAGAGGCAAAAACGCTCGTTACAGACATCACTT
TCTACATGA
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