mRNA_16468 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|152099 vs. uniprot
Match: A0A836CK27_9STRA (RNA recognition motif 2-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK27_9STRA) HSP 1 Score: 256 bits (654), Expect = 1.600e-86 Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1
Query: 1 LDTKKIAKGQDRRTTIMIRNIPNKYTQAMLLQEIDANFRGGYDFFYLPIDFKNRCNVGYAFINFIDFRRIVSFTREFHGQRWRNFNSEKVCAISYARIQGKASMISRFQNSSLMEKDGEYRPLLF 375
LDTKKIAKGQDRRTTIMIRNIPNKYTQAMLLQEIDANFRGGYDFFYLPIDFKNRCNVGYAFINFIDFRRIVSFTREFHGQRWRNFNSEKVCAISYARIQGKASMISRFQNSSLMEKDGEYRPLLF
Sbjct: 1 LDTKKIAKGQDRRTTIMIRNIPNKYTQAMLLQEIDANFRGGYDFFYLPIDFKNRCNVGYAFINFIDFRRIVSFTREFHGQRWRNFNSEKVCAISYARIQGKASMISRFQNSSLMEKDGEYRPLLF 125
BLAST of jgi.p|Trimin1|152099 vs. uniprot
Match: A0A836C7Y7_9STRA (RNA recognition motif 2-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7Y7_9STRA) HSP 1 Score: 231 bits (588), Expect = 1.090e-75 Identity = 112/125 (89.60%), Postives = 117/125 (93.60%), Query Frame = 1
Query: 1 LDTKKIAKGQDRRTTIMIRNIPNKYTQAMLLQEIDANFRGGYDFFYLPIDFKNRCNVGYAFINFIDFRRIVSFTREFHGQRWRNFNSEKVCAISYARIQGKASMISRFQNSSLMEKDGEYRPLLF 375
LD KIAKG D+RTTIMIRNIPNKYTQAMLLQEI+ NF +DFFYLPIDFKNRCNVGYAFINFIDFRRI++FTREFHGQRWRNFNSEKVCAISYARIQGKASMI RFQNSSLMEKDGEYRPLLF
Sbjct: 11 LDIGKIAKGLDKRTTIMIRNIPNKYTQAMLLQEINVNFLEAFDFFYLPIDFKNRCNVGYAFINFIDFRRIIAFTREFHGQRWRNFNSEKVCAISYARIQGKASMICRFQNSSLMEKDGEYRPLLF 135
BLAST of jgi.p|Trimin1|152099 vs. uniprot
Match: D7FMB4_ECTSI (RRM_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMB4_ECTSI) HSP 1 Score: 225 bits (574), Expect = 3.600e-67 Identity = 105/125 (84.00%), Postives = 118/125 (94.40%), Query Frame = 1
Query: 1 LDTKKIAKGQDRRTTIMIRNIPNKYTQAMLLQEIDANFRGGYDFFYLPIDFKNRCNVGYAFINFIDFRRIVSFTREFHGQRWRNFNSEKVCAISYARIQGKASMISRFQNSSLMEKDGEYRPLLF 375
LD KK++KG D+RTTIM+RNIPNKYTQ MLLQEID+++RG YDFFYLPIDFKN+CNVGYAFINF+D+RRIV F REF+ QRW+NFNSEKVCAISYARIQGKASMISRFQNSSLMEKDGEYRPL+F
Sbjct: 621 LDLKKVSKGMDKRTTIMVRNIPNKYTQMMLLQEIDSSYRGAYDFFYLPIDFKNKCNVGYAFINFMDYRRIVPFFREFNAQRWKNFNSEKVCAISYARIQGKASMISRFQNSSLMEKDGEYRPLIF 745
BLAST of jgi.p|Trimin1|152099 vs. uniprot
Match: A0A7S2V2F9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2F9_9STRA) HSP 1 Score: 194 bits (492), Expect = 3.830e-61 Identity = 91/125 (72.80%), Postives = 107/125 (85.60%), Query Frame = 1
Query: 1 LDTKKIAKGQDRRTTIMIRNIPNKYTQAMLLQEIDANFRGGYDFFYLPIDFKNRCNVGYAFINFIDFRRIVSFTREFHGQRWRNFNSEKVCAISYARIQGKASMISRFQNSSLMEKDGEYRPLLF 375
LD K++ D+RTT+M+RNIPNKYTQ MLLQEI+ N + YDFFYLPIDFKN+CNVGYAFINFI IV F EF+G++W+NFNSEKVC ISYARIQGK+SMISRFQNSSLM+KDGE++PLLF
Sbjct: 23 LDVKRVLARSDQRTTVMVRNIPNKYTQQMLLQEINVNHKETYDFFYLPIDFKNKCNVGYAFINFISPLSIVEFYEEFNGRKWKNFNSEKVCCISYARIQGKSSMISRFQNSSLMDKDGEFQPLLF 147
BLAST of jgi.p|Trimin1|152099 vs. uniprot
Match: A0A7S2BIN8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BIN8_9STRA) HSP 1 Score: 200 bits (508), Expect = 1.590e-60 Identity = 93/120 (77.50%), Postives = 108/120 (90.00%), Query Frame = 1
Query: 16 IAKGQDRRTTIMIRNIPNKYTQAMLLQEIDANFRGGYDFFYLPIDFKNRCNVGYAFINFIDFRRIVSFTREFHGQRWRNFNSEKVCAISYARIQGKASMISRFQNSSLMEKDGEYRPLLF 375
I +G DRRTT+MIRNIPNKYTQ +L+EI+ +F+G YDFFYLPIDFKN+CNVGYAFINFI+FR IV F ++HG+RW NFNSEKVCAI+YARIQGKASMISRFQNSSLM+K GE+RPLLF
Sbjct: 265 IMQGVDRRTTVMIRNIPNKYTQMAVLEEINQHFKGTYDFFYLPIDFKNKCNVGYAFINFIEFRAIVPFVCKYHGRRWNNFNSEKVCAITYARIQGKASMISRFQNSSLMDKSGEFRPLLF 384
BLAST of jgi.p|Trimin1|152099 vs. uniprot
Match: A0A7S2SS48_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SS48_9STRA) HSP 1 Score: 207 bits (526), Expect = 6.130e-60 Identity = 97/125 (77.60%), Postives = 113/125 (90.40%), Query Frame = 1
Query: 1 LDTKKIAKGQDRRTTIMIRNIPNKYTQAMLLQEIDANFRGGYDFFYLPIDFKNRCNVGYAFINFIDFRRIVSFTREFHGQRWRNFNSEKVCAISYARIQGKASMISRFQNSSLMEKDGEYRPLLF 375
L+ ++ +G DRRTT+M+RNIPNKYTQA +L+EI+ NF+G YDFFYLPIDFKN+CNVGYAF+NFIDFR IVSF +F+G+RW NFNSEKVCAI+YARIQGK SMISRFQNSSLMEKDGEYRPLLF
Sbjct: 730 LNIDRVMQGSDRRTTLMVRNIPNKYTQAAVLEEINENFQGLYDFFYLPIDFKNKCNVGYAFMNFIDFRSIVSFFCKFNGRRWNNFNSEKVCAITYARIQGKTSMISRFQNSSLMEKDGEYRPLLF 854
BLAST of jgi.p|Trimin1|152099 vs. uniprot
Match: A0A4D9D2V8_9STRA (RRM domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2V8_9STRA) HSP 1 Score: 204 bits (520), Expect = 1.160e-58 Identity = 97/125 (77.60%), Postives = 110/125 (88.00%), Query Frame = 1
Query: 1 LDTKKIAKGQDRRTTIMIRNIPNKYTQAMLLQEIDANFRGGYDFFYLPIDFKNRCNVGYAFINFIDFRRIVSFTREFHGQRWRNFNSEKVCAISYARIQGKASMISRFQNSSLMEKDGEYRPLLF 375
LD ++I G DRRTTIM+RN+PNKY+Q +LL EI+A +G YDFFYLPIDFKN+CNVGYAFINFI+ + IV F +EF+GQRWRNFNSEKVCAISYARIQGK SMISRF NSSLMEKDGEYRPLLF
Sbjct: 1109 LDVERILMGMDRRTTIMVRNVPNKYSQQLLLNEINATHKGKYDFFYLPIDFKNKCNVGYAFINFIEPKAIVPFFKEFNGQRWRNFNSEKVCAISYARIQGKQSMISRFSNSSLMEKDGEYRPLLF 1233
BLAST of jgi.p|Trimin1|152099 vs. uniprot
Match: A0A482RU13_9ARCH (RRM domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RU13_9ARCH) HSP 1 Score: 186 bits (473), Expect = 3.070e-58 Identity = 83/125 (66.40%), Postives = 106/125 (84.80%), Query Frame = 1
Query: 1 LDTKKIAKGQDRRTTIMIRNIPNKYTQAMLLQEIDANFRGGYDFFYLPIDFKNRCNVGYAFINFIDFRRIVSFTREFHGQRWRNFNSEKVCAISYARIQGKASMISRFQNSSLMEKDGEYRPLLF 375
LD +++ G + RTT+M+RNIPNKY+Q MLL+E++A +G YDFFYLPIDFKNRCNVGYAFINF+ IV F R F GQRWR+FNSEK+C+++YARIQGKA+++SRFQNSSL++KD Y+PLLF
Sbjct: 32 LDLQRLQDGSETRTTLMVRNIPNKYSQQMLLEEVNAQHQGQYDFFYLPIDFKNRCNVGYAFINFLSPLHIVDFVRRFEGQRWRSFNSEKICSVTYARIQGKAALVSRFQNSSLLDKDDTYKPLLF 156
BLAST of jgi.p|Trimin1|152099 vs. uniprot
Match: A0A7S3Y2P3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2P3_HETAK) HSP 1 Score: 186 bits (472), Expect = 4.960e-58 Identity = 87/125 (69.60%), Postives = 103/125 (82.40%), Query Frame = 1
Query: 1 LDTKKIAKGQDRRTTIMIRNIPNKYTQAMLLQEIDANFRGGYDFFYLPIDFKNRCNVGYAFINFIDFRRIVSFTREFHGQRWRNFNSEKVCAISYARIQGKASMISRFQNSSLMEKDGEYRPLLF 375
L+ ++I G D RTT+M+RNIPNKYTQ MLL EI+A F G YDFFYLPIDFKNRCNVGYAF+NF+ R I +F R F GQRW FNSEKVCAI+YAR+QG+ +MI+RFQNSSL+ K+G YRPLLF
Sbjct: 29 LNMQQILDGADLRTTVMVRNIPNKYTQQMLLDEINAEFEGTYDFFYLPIDFKNRCNVGYAFVNFLSARTIPAFHRRFDGQRWGTFNSEKVCAIAYARLQGRRAMIARFQNSSLLAKEGRYRPLLF 153
BLAST of jgi.p|Trimin1|152099 vs. uniprot
Match: A0A3R7KLF4_9STRA (RRM_2 domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KLF4_9STRA) HSP 1 Score: 190 bits (482), Expect = 8.780e-57 Identity = 89/125 (71.20%), Postives = 105/125 (84.00%), Query Frame = 1
Query: 1 LDTKKIAKGQDRRTTIMIRNIPNKYTQAMLLQEIDANFRGGYDFFYLPIDFKNRCNVGYAFINFIDFRRIVSFTREFHGQRWRNFNSEKVCAISYARIQGKASMISRFQNSSLMEKDGEYRPLLF 375
L +++A G+D RTT+MIRNIPNKYTQ MLL EI+ N RG YDFFYLPIDFKN+CN+GYAFINFI+ I +F REF GQ+W NFNSEKVCAISYAR+QGK +MI+RFQNSSL+EK YRPL+F
Sbjct: 233 LSIERVASGEDMRTTLMIRNIPNKYTQQMLLAEINRNHRGNYDFFYLPIDFKNKCNMGYAFINFIEAAHIEAFHREFDGQKWTNFNSEKVCAISYARLQGKQAMIARFQNSSLLEKHESYRPLVF 357 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|152099 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_16468 ID=mRNA_16468|Name=jgi.p|Trimin1|152099|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=375bp|location=Sequence derived from alignment at Contig_162:208569..209587- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CTGGACACCAAGAAGATAGCCAAGGGGCAGGACCGTCGCACAACAATCATback to top protein sequence of jgi.p|Trimin1|152099 >Trimin1|152099|gw1.162.20.1 ID=Trimin1|152099|gw1.162.20.1|Name=jgi.p|Trimin1|152099|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=125bp LDTKKIAKGQDRRTTIMIRNIPNKYTQAMLLQEIDANFRGGYDFFYLPIDback to top mRNA from alignment at Contig_162:208569..209587- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_16468 ID=mRNA_16468|Name=jgi.p|Trimin1|152099|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1019bp|location=Sequence derived from alignment at Contig_162:208569..209587- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_162:208569..209587- >mRNA_16468 ID=mRNA_16468|Name=jgi.p|Trimin1|152099|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=375bp|location=Sequence derived from alignment at Contig_162:208569..209587- (Tribonema minus UTEX_B_3156 )back to top |