mRNA_16465 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|153623 vs. uniprot
Match: A0A835Z6X0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6X0_9STRA) HSP 1 Score: 320 bits (821), Expect = 3.010e-111 Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1
Query: 1 CGGNGMQYSNQTCGCFNGFQGALCAEKVCPYGMAWFNVASASNAAHAQAECSARGSCNRETGLCSCSQGFEGGACERLSCPGQGSAGPCNGHGRCITMAAAAAGWDGVTLLRPPVAYTSPWDAYKMQGCVCDEGWYGYDCSLHDCPSG 444
CGGNGMQYSNQTCGCFNGFQGALCAEKVCPYGMAWFNVASASNAAHAQAECSARGSCNRETGLCSCSQGFEGGACERLSCPGQGSAGPCNGHGRCITMAAAAAGWDGVTLLRPPVAYTSPWDAYKMQGCVCDEGWYGYDCSLHDCPSG
Sbjct: 1 CGGNGMQYSNQTCGCFNGFQGALCAEKVCPYGMAWFNVASASNAAHAQAECSARGSCNRETGLCSCSQGFEGGACERLSCPGQGSAGPCNGHGRCITMAAAAAGWDGVTLLRPPVAYTSPWDAYKMQGCVCDEGWYGYDCSLHDCPSG 148
BLAST of jgi.p|Trimin1|153623 vs. uniprot
Match: A0A7S2WG44_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WG44_9STRA) HSP 1 Score: 141 bits (356), Expect = 1.420e-37 Identity = 68/144 (47.22%), Postives = 91/144 (63.19%), Query Frame = 1
Query: 16 MQYSNQTCGCFNGFQGALCAEKVCPYGMAWFNVASASNAAHAQ-AECSARGSCNRETGLCSCSQGFEGGACERLSCPGQGSAGPCNGHGRCITMAAAAAGWDGVTLLRPPVAYTSPWDAYKMQGCVCDEGWYGYDCSLHDCPSG 444
+ + +C C +G+ G C+ ++CP G+AW + SA + AH ECS G C+RETG+C+C +GFEG CE +SCP PC G G+C+++ A + WDG L RP YT PWDA K+ GCVCD G+ GYDCS CPSG
Sbjct: 45 LNVKDHSCICQSGWTGPDCSLRLCPSGVAWVDYPSAQDEAHESFVECSNMGYCDRETGICTCREGFEGPGCEYMSCPLVDGV-PCGGRGQCLSLRQAGSSWDGQALTRPNAPYTDPWDADKIFGCVCDMGFTGYDCSERQCPSG 187
BLAST of jgi.p|Trimin1|153623 vs. uniprot
Match: A0A7S2RYU0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RYU0_9STRA) HSP 1 Score: 141 bits (356), Expect = 3.220e-36 Identity = 68/144 (47.22%), Postives = 91/144 (63.19%), Query Frame = 1
Query: 16 MQYSNQTCGCFNGFQGALCAEKVCPYGMAWFNVASASNAAHAQ-AECSARGSCNRETGLCSCSQGFEGGACERLSCPGQGSAGPCNGHGRCITMAAAAAGWDGVTLLRPPVAYTSPWDAYKMQGCVCDEGWYGYDCSLHDCPSG 444
+ + +C C +G+ G C+ ++CP G+AW + SA + AH ECS G C+RETG+C+C +GFEG CE +SCP PC G G+C+++ A + WDG L RP YT PWDA K+ GCVCD G+ GYDCS CPSG
Sbjct: 45 LNVKDHSCICQSGWTGPDCSLRLCPSGVAWVDYPSAQDEAHESFVECSNMGYCDRETGICTCREGFEGPGCEYMSCPLVDGV-PCGGRGQCLSLRQAGSSWDGQALTRPNAPYTDPWDADKIFGCVCDMGFTGYDCSERQCPSG 187
BLAST of jgi.p|Trimin1|153623 vs. uniprot
Match: D8LUB0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUB0_ECTSI) HSP 1 Score: 137 bits (345), Expect = 2.060e-35 Identity = 73/146 (50.00%), Postives = 89/146 (60.96%), Query Frame = 1
Query: 1 CGGNGMQYSNQTCGCFNGFQGALCAEKVCPYGMAWFNVASASNAAHAQAECSARGSCNRETGLCSCSQGFEGGACERLSCPGQGSAGPCNGHGRCITMAAAAAGWDGVTLLRPPVAYTSPWDAYKMQGCVCDEGWYGYDCSLHDCP 438
C GNG C C++G+ G C+ CP AW ++AS ++ AH A CS G CN ETGLC C +GF G ACER+SCP CNGHG+C++MA AAA DG L+ VA WDA + GCVCDEG+ GYDCSL CP
Sbjct: 32 CSGNGECDPQGFCDCWDGYDGWDCSFLRCPSAPAWADIASGTDDAHNDAVCSNMGYCNGETGLCICHEGFTGRACERMSCPND-----CNGHGQCLSMAEAAAAEDGNRLIH--VASYEAWDADMIYGCVCDEGYEGYDCSLRPCP 170
BLAST of jgi.p|Trimin1|153623 vs. uniprot
Match: A0A7S3XN04_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XN04_HETAK) HSP 1 Score: 137 bits (344), Expect = 1.050e-34 Identity = 71/151 (47.02%), Postives = 92/151 (60.93%), Query Frame = 1
Query: 1 CGGNGMQYSNQTCGCFNGFQGALCAEKVCPYGMAWFNVASASNAAHAQAECSARGSCNRETGLCSCSQGFEGGACERLSCPGQGSAGPCNGHGRCITMAAAAAGW---DGVTLLRPPVAYTSPWDAYKMQGCVCDEGWYGYDCSLHDCPSG 444
C G G C C G+QGA C+EK+CP+G+AW ++ + + AHAQAECS RG C+R G C+C +GF G ACERLSC CNG G C++ AA + D V + Y +PWDA K+ GCVCDEG+ YDC L +CP+G
Sbjct: 28 CNGKGQCNIYSQCECIEGYQGADCSEKICPFGVAWGDMPTDEDTAHAQAECSNRGICDRTNGDCTCMEGFTGSACERLSCESD-----CNGAGICLSYRKFAANYLNDDSVGYV-----YETPWDADKVWGCVCDEGFQNYDCILRECPTG 168
BLAST of jgi.p|Trimin1|153623 vs. uniprot
Match: A0A485L6R3_9STRA (Aste57867_16194 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L6R3_9STRA) HSP 1 Score: 134 bits (337), Expect = 8.910e-34 Identity = 73/149 (48.99%), Postives = 89/149 (59.73%), Query Frame = 1
Query: 1 CGGNGM-QYSNQTCGCFNGFQGALCAEKVCPYGMAWFNVASASNAAHAQAECSARGSCNRETGLCSCSQGFEGGACERLSCPGQGSAGPCNGHGRCITMAAAAAGWDGVTLLRPPVAYTSPWDAYKMQGCVCDEGWYGYDCSLHDCPSG 444
C GNG+ S + C C G++G C K+CPYG AW + A+A++ AHA AECS G C+ TG+C C GFEG ACE +SCP PC +GRC+TMA AA D S WDA K++GC CD GW GYDCSL CP G
Sbjct: 31 CNGNGVCNPSAKLCQCVTGYRGNQCEFKICPYGYAWADQATATDTAHAMAECSNMGLCDPTTGVCKCQAGFEGPACEVMSCP------PCV-NGRCLTMAEAAQAQDDYNFFTTTTY--SLWDANKVRGCKCDYGWQGYDCSLRRCPVG 170
BLAST of jgi.p|Trimin1|153623 vs. uniprot
Match: A0A482SIQ2_9ARCH (EGF-like domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SIQ2_9ARCH) HSP 1 Score: 130 bits (326), Expect = 1.110e-33 Identity = 74/159 (46.54%), Postives = 95/159 (59.75%), Query Frame = 1
Query: 1 CGGNGMQYSNQT--CGCFNGFQGALCAEKVCPYGMAWFNVASASNAAHAQA--ECSARGSCNRETGLCSCSQGFEGGACERLSCPGQGSAGP--CNGHGRCITMAAAAAGWDGVTLLRPPVAYTSP-----WDAYKMQGCVCDEGWYGYDCSLHDCPSG 444
C G+G +N T C C +G+ GA C+E+VCP +AWF + A N AH ECS G C+R TG+CSC+ GF G AC RL+CPG + P CNGHGRC+ M A +L+ T P WDA ++ GC CDEG+ GYDCSL+ CP+G
Sbjct: 27 CSGHGECRNNPTYTCECSDGWTGADCSERVCPKDLAWFGLPEADNKAHLATYLECSGVGLCDRSTGMCSCNLGFTGSACSRLACPGINADTPEGCNGHGRCVDMYTLAKINTKNGVLQNYTYGTIPNNPHTWDANRVFGCECDEGYEGYDCSLNTCPTG 185
BLAST of jgi.p|Trimin1|153623 vs. uniprot
Match: D0NQ83_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NQ83_PHYIT) HSP 1 Score: 132 bits (333), Expect = 3.260e-33 Identity = 74/150 (49.33%), Postives = 91/150 (60.67%), Query Frame = 1
Query: 1 CGGNGM-QYSNQTCGCFNGFQGALCAEKVCPYGMAWFNVASASNAAHAQAECSARGSCNRETGLCSCSQGFEGGACERLSCPGQGSAGPCNGHGRCITMAAAAAGWDGVTLLRPPVAYT-SPWDAYKMQGCVCDEGWYGYDCSLHDCPSG 444
C G+G Q S C CF G+ GA C K+CP G AW + A ++ AH ECSA G C+R TG+C+C GFEG ACERLSCP C+G+GRCI+M AA D L V+ T S WDA K+ GC CD G+ G+DCS +CP G
Sbjct: 26 CSGHGACQRSTGRCSCFPGYGGATCVSKLCPTGAAWVDRAWTTDNAHQPVECSAMGRCDRPTGICACESGFEGVACERLSCPNA-----CSGNGRCISMRDAATLQDDRNFL---VSTTYSLWDADKIMGCQCDPGFSGFDCSQRECPKG 167
BLAST of jgi.p|Trimin1|153623 vs. uniprot
Match: A0A0W8D933_PHYNI (EGF-like domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=A0A0W8D933_PHYNI) HSP 1 Score: 132 bits (331), Expect = 4.110e-33 Identity = 75/150 (50.00%), Postives = 91/150 (60.67%), Query Frame = 1
Query: 1 CGGNGM-QYSNQTCGCFNGFQGALCAEKVCPYGMAWFNVASASNAAHAQAECSARGSCNRETGLCSCSQGFEGGACERLSCPGQGSAGPCNGHGRCITMAAAAAGWDGVTLLRPPVAYT-SPWDAYKMQGCVCDEGWYGYDCSLHDCPSG 444
C G+G Q S C CF G+ GA CA ++CP G AW + A A + AH AECSA G C+R TG C+C GFEG ACERLSCP C+G+GRCI+M AA D V+ T S WDA K+ GC CD G+ G+DCS +CP G
Sbjct: 27 CSGHGACQRSTGRCTCFPGYGGATCASRLCPTGAAWVDRAWAVDKAHQPAECSAMGRCDRSTGTCTCESGFEGVACERLSCPNL-----CSGNGRCISMRDAATIQDDRNFF---VSTTYSLWDADKIMGCQCDPGFTGFDCSQRECPKG 168
BLAST of jgi.p|Trimin1|153623 vs. uniprot
Match: A0A8J5IJG9_9STRA (EGF_2 domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IJG9_9STRA) HSP 1 Score: 130 bits (328), Expect = 1.480e-32 Identity = 74/150 (49.33%), Postives = 91/150 (60.67%), Query Frame = 1
Query: 1 CGGNGM-QYSNQTCGCFNGFQGALCAEKVCPYGMAWFNVASASNAAHAQAECSARGSCNRETGLCSCSQGFEGGACERLSCPGQGSAGPCNGHGRCITMAAAAAGWDGVTLLRPPVAYT-SPWDAYKMQGCVCDEGWYGYDCSLHDCPSG 444
C G+G Q S C CF GF GA CA ++CP G AW + A A + AH ++CSA G C+R TG C+C GFEG ACERLSCP C+G+GRCI+M AA D V+ T S WDA K+ GC CD G+ G+DCS +CP G
Sbjct: 29 CSGHGACQRSTGRCTCFPGFGGATCASRLCPTGAAWVDRAWAVDKAHQPSQCSAMGRCDRSTGACTCESGFEGVACERLSCPNL-----CSGNGRCISMRDAATLQDDRNFF---VSTTYSLWDADKIMGCQCDPGFTGFDCSQRECPKG 170 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|153623 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_16465 ID=mRNA_16465|Name=jgi.p|Trimin1|153623|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=444bp|location=Sequence derived from alignment at Contig_162:172484..174181- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. TGCGGAGGCAATGGCATGCAGTACAGCAATCAAACCTGCGGATGCTTTAAback to top protein sequence of jgi.p|Trimin1|153623 >Trimin1|153623|gw1.162.22.1 ID=Trimin1|153623|gw1.162.22.1|Name=jgi.p|Trimin1|153623|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=148bp CGGNGMQYSNQTCGCFNGFQGALCAEKVCPYGMAWFNVASASNAAHAQAEback to top mRNA from alignment at Contig_162:172484..174181- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_16465 ID=mRNA_16465|Name=jgi.p|Trimin1|153623|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1698bp|location=Sequence derived from alignment at Contig_162:172484..174181- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_162:172484..174181- >mRNA_16465 ID=mRNA_16465|Name=jgi.p|Trimin1|153623|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=444bp|location=Sequence derived from alignment at Contig_162:172484..174181- (Tribonema minus UTEX_B_3156 )back to top |