mRNA_16462 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|177974 vs. uniprot
Match: A0A835ZG45_9STRA (EGF-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG45_9STRA) HSP 1 Score: 513 bits (1320), Expect = 3.920e-184 Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 1
Query: 1 MRLLLQLLVLAALQQTATAVCPNFCSGHGTCGPENTCACNDGWTAAVDCSLRNCPLGAAWADKAYATDKAHADVECSGAGICDGETGECQCFTPYVGSACQRLRCPNDCSSHGVCMTMADVVRYYGALGSTYDNWDKDSTTMCVCDAGYFGSDCTKRMCPKGDDPLTIGQASRQIEIEISSTATLVGGTFDFMFNGQLVTIATNAGDDACEAVSASAAYCHCACMMLVSSFFLYYSHALNGTNL 732
MRLLLQLLVLAALQQTATAVCPNFCSGHGTCGPENTCACNDGWTAAVDCSLRNCPLGAAWADKAYATDKAHADVECSGAGICDGETGECQCFTPYVGSACQRLRCPNDCSSHGVCMTMADVVRYYGALGSTYDNWDKDSTTMCVCDAGYFGSDCTKRMCPKGDDPLTIGQASRQIEIEISSTATLVGGTFDFMFNGQLVTIATNAGDDACEAVSASAAYCHCACMMLVSSFFLYYSHALNGTNL
Sbjct: 1 MRLLLQLLVLAALQQTATAVCPNFCSGHGTCGPENTCACNDGWTAAVDCSLRNCPLGAAWADKAYATDKAHADVECSGAGICDGETGECQCFTPYVGSACQRLRCPNDCSSHGVCMTMADVVRYYGALGSTYDNWDKDSTTMCVCDAGYFGSDCTKRMCPKGDDPLTIGQASRQIEIEISSTATLVGGTFDFMFNGQLVTIATNAGDDACEAVSASAAYCHCACMMLVSSFFLYYSHALNGTNL 244
BLAST of jgi.p|Trimin1|177974 vs. uniprot
Match: D8LFY3_ECTSI (EGF-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFY3_ECTSI) HSP 1 Score: 247 bits (631), Expect = 1.950e-76 Identity = 114/213 (53.52%), Postives = 138/213 (64.79%), Query Frame = 1
Query: 49 ATAVCPNFCSGHGTCGPENTCACNDGWTAAVDCSLRNCPLGAAWADKAYATDKAHADVECSGAGICDGETGECQCFTPYVGSACQRLRCPNDCSSHGVCMTMADVVRYYG-----------ALGSTYDNWDKDSTTMCVCDAGYFGSDCTKRMCPKGDDPLTIGQASRQIEIEISST-ATLVGGTFDFMFNGQLVTIATN-----AGDDACEA 636
A A CPN CSGHGTCGP C CN GW A DCSLR C G AWADKAYATD AH++VECS AGICD +TG C CF+P+ G+ACQR RCP DCS HG CMT+AD+ R+YG +G +Y NWD STT C CD G+FG+DC+ RMCPK DDP+T+ Q R I I + + + + G+ F FNG ++T+ D CEA
Sbjct: 24 ANAACPNHCSGHGTCGPGAKCTCNSGWDFAPDCSLRTCSKGVAWADKAYATDIAHSEVECSNAGICDRDTGICSCFSPFTGAACQRARCPGDCSGHGTCMTIADMSRFYGPDYTQPGTGGDGIGPSYGNWDAQSTTACYCDQGHFGADCSNRMCPKADDPVTVNQDDRSIFISVGTDHSDSMNGSLAFTFNGHSTRLSTSIFTSTVADSLCEA 236
BLAST of jgi.p|Trimin1|177974 vs. uniprot
Match: A0A7S2WIH4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WIH4_9STRA) HSP 1 Score: 222 bits (566), Expect = 1.230e-67 Identity = 100/190 (52.63%), Postives = 117/190 (61.58%), Query Frame = 1
Query: 55 AVCPNFCSGHGTCGPENTCACNDGWTAAVDCSLRNCPLGAAWADKAYATDKAHADVECSGAGICDGETGECQCFTPYVGSACQRLRCPNDCSSHGVCMTMADVVRYYG------------ALGSTYDNWDKDSTTMCVCDAGYFGSDCTKRMCPKGDDPLTIGQASRQIEIEISSTATLVGGTFDFMFNG 588
A CPN CSGHG CG EN C C+DGW DCS R CP AWAD+AY+ D AH ECSGAG+CD G C CF Y G+ACQR RCPNDCS HG+C+T+ + R G +G Y NWD D TMC CD G+FG DC+ RMCPKGDDPLT+ Q R I + ++ T +GG F F G
Sbjct: 47 ASCPNQCSGHGACGNENVCTCDDGWVVMPDCSERQCPYDRAWADRAYSDDAAHTLAECSGAGLCDRAQGTCTCFDGYTGAACQRARCPNDCSGHGLCITLGALGRLEGNDYSARPGVGGDGIGPEYTNWDADHVTMCNCDWGFFGPDCSLRMCPKGDDPLTVDQGYRAISVRLTGDGTGLGGRFRISFLG 236
BLAST of jgi.p|Trimin1|177974 vs. uniprot
Match: A0A8K1CGE0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CGE0_PYTOL) HSP 1 Score: 234 bits (597), Expect = 5.830e-67 Identity = 112/223 (50.22%), Postives = 137/223 (61.43%), Query Frame = 1
Query: 19 LLVLAALQQTATAVCPNFCSGHGTCGPENTCACNDGWTAAVDCSLRNCPLGAAWADKAYATDKAHADVECSGAGICDGETGECQCFTPYVGSACQRLRCPNDCSSHGVCMTMADVVRYYG----------ALGSTYDNWDKDSTTMCVCDAGYFGSDCTKRMCPKGDDPLTIGQASRQIEIEISSTATLVGGTFDFMFNGQLVTIATNAGDDACEAVSASAAY 657
LL+L + +A CPNFCSGHGTCG N C C+ W+AA DCSLR CP G AW+DKA T+KAHA ECS G+CD GEC CF Y G+ACQRLRCPNDCS HG+C ++A + R YG +G Y NW+KDS + C CD GY G DC++RMCPK DDPLT Q R I+I T + G+ FNG+ + NA A S +AA+
Sbjct: 3 LLLLTMATRRVSATCPNFCSGHGTCGASNQCTCDTAWSAAPDCSLRKCPSGVAWSDKASTTNKAHATAECSNRGMCDYTKGECMCFNGYTGAACQRLRCPNDCSGHGLCYSLATLAREYGPDSLPGVGGDGVGPNYQNWEKDSMSTCFCDTGYNGPDCSQRMCPKNDDPLTTLQGYRTIKITTGGTTDPLVGSIRVKFNGEAAVL--NADGSANTDASCTAAF 223
BLAST of jgi.p|Trimin1|177974 vs. uniprot
Match: A0A0A7CM32_9STRA (Secreted protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A0A7CM32_9STRA) HSP 1 Score: 209 bits (533), Expect = 2.690e-64 Identity = 99/201 (49.25%), Postives = 124/201 (61.69%), Query Frame = 1
Query: 25 VLAALQQTATAVCPNFCSGHGTCGPENTCACNDGWTAAVDCSLRNCPLGAAWADKAYATDKAHADVECSGAGICDGETGECQCFTPYVGSACQRLRCPNDCSSHGVCMTMADVVRYYG-----ALGSTYDNWDKDSTTMCVCDAGYFGSDCTKRMCPKGDDPLTIGQASRQIEIEISSTATLVGGTFDFMFNGQLVTIATN 612
+LA++ A C NFCSGHGTCG N C C GWT A DCS + CP G AWADKA T+ AH+ +ECS G+CD TG C C T + G+ACQR C N+CS HG C TMA + YG G Y NW++ S C CD GY G DC+ RMCPK DDPLT GQ R + + ++++ T + G+ F F+GQ VT+ N
Sbjct: 9 LLASIWTGVDATCANFCSGHGTCGGANKCTCFPGWTGAPDCSRKVCPTGTAWADKASGTNVAHSAMECSNRGVCDYSTGVCMCTTGFTGNACQRRVCLNNCSGHGTCQTMAMMGLMYGPDVGTGKGPAYTNWEQSSMMSCFCDYGYQGPDCSLRMCPKNDDPLTTGQGYRTVSLTLAAS-TALAGSVTFTFSGQSVTMPAN 208
BLAST of jgi.p|Trimin1|177974 vs. uniprot
Match: A0A0P1AWZ5_PLAHL (Teneurin-1 and related extracellular matrix proteins, contain EGF-like repeats (Fragment) n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AWZ5_PLAHL) HSP 1 Score: 208 bits (529), Expect = 7.340e-63 Identity = 92/180 (51.11%), Postives = 114/180 (63.33%), Query Frame = 1
Query: 43 QTATAVCPNFCSGHGTCGPENTCACNDGWTAAVDCSLRNCPLGAAWADKAYATDKAHADVECSGAGICDGETGECQCFTPYVGSACQRLRCPNDCSSHGVCMTMADVVRYYG----------ALGSTYDNWDKDSTTMCVCDAGYFGSDCTKRMCPKGDDPLTIGQASRQIEIEISSTAT 552
Q A A C N CSGHG CG N C C+ W A DCS+R CP+G AW DKA T+ AHA ECS G+CD GEC CF Y G+ACQRLRCP++CS HG+C + A + YG +G Y NW+KDS + C+CD GY G DC++ MC K DDPLT GQ RQI+I++ + A+
Sbjct: 21 QIANAACANSCSGHGRCGSSNQCICDADWALAPDCSMRRCPVGVAWTDKARTTNLAHAHAECSNRGVCDYSRGECTCFDGYSGAACQRLRCPSNCSGHGMCYSSAILALRYGPDSLPNVAGDGVGPVYSNWEKDSVSSCMCDMGYTGPDCSQLMCAKNDDPLTTGQVHRQIQIQVGADAS 200
BLAST of jgi.p|Trimin1|177974 vs. uniprot
Match: D7G350_ECTSI (EGF-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G350_ECTSI) HSP 1 Score: 209 bits (532), Expect = 4.020e-62 Identity = 94/203 (46.31%), Postives = 119/203 (58.62%), Query Frame = 1
Query: 25 VLAALQQTATAVCPNFCSGHGTCGPENTCACNDGWTAAVDCSLRNCPLGAAWADKAYATDKAHADVECSGAGICDGETGECQCFTPYVGSACQRLRCPNDCSSHGVCMTMADVVRYYGA-----LGS-TYDNWDKDSTTMCVCDAGYFGSDCTKRMCPKGDDPLTIGQASRQIEIEISSTATLVGGTFDFMFNGQLVTIATNA 615
VL+ + AVCPN C+GHG CG EN C C GW DCSL+ CP G +W KAY + AH +ECS G+CD TG C C + Y GSACQRL CPNDCS G C T+ +YG +GS Y NW+ D C+CD GY G DC+ RMCPKGDDP+T Q S ++ + +++T ++ G F F G+ NA
Sbjct: 25 VLSYMDGEVLAVCPNMCNGHGECGLENVCECETGWDLVADCSLKECPTGVSWGSKAYEENTAHVVMECSNVGVCDRVTGSCSCPSGYTGSACQRLACPNDCSGRGTCATLGQAAEFYGVTRYGGVGSFVYTNWEADMVMTCICDWGYTGGDCSLRMCPKGDDPVTTLQESPRVAMTVNATDGVMEGNFVLTFQGESFAFPANA 227
BLAST of jgi.p|Trimin1|177974 vs. uniprot
Match: A0A6G0KY74_9STRA (EGF-like domain-containing protein (Fragment) n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0KY74_9STRA) HSP 1 Score: 218 bits (555), Expect = 7.120e-62 Identity = 106/221 (47.96%), Postives = 130/221 (58.82%), Query Frame = 1
Query: 19 LLVLAALQQTATAVCPNFCSGHGTCGPENTCACNDGWTAAVDCSLRNCPLGAAWADKAYATDKAHADVECSGAGICDGETGECQCFTPYVGSACQRLRCPNDCSSHGVCMTMADVVRYYG-----ALGSTYDNWDKDSTTMCVCDAGYFGSDCTKRMCPKGDDPLTIGQASRQIEIEISST---ATLVGGTFDFMFNGQLVTIATNAGDDACEAVSASAAY 657
LL+ + Q A A C N CSGHG CG N C C+ W A DCSLR CP G AW DKA + AHA ECS G+CD GEC CF Y G+ACQRLRCP+DCS HG+C + A + YG G TY NW+KDS T C+CD GY G DC++ MC K DDPLT GQA R I+I + + AT + G+ F G + + AG DA + + A+
Sbjct: 12 LLLPVVVVQVADAACANSCSGHGRCGASNQCTCDADWALAPDCSLRKCPTGVAWTDKAKTANAAHAVAECSNRGVCDYSKGECTCFNGYTGAACQRLRCPSDCSGHGLCYSSATLASQYGPSSLAGSGPTYTNWEKDSMTSCMCDMGYNGPDCSQFMCAKNDDPLTTGQAYRTIQIAVGADPTPATALAGSVRVHFLGDVAVFSAVAGADAAHETACAQAF 232
BLAST of jgi.p|Trimin1|177974 vs. uniprot
Match: A0A836CFV3_9STRA (EGF-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFV3_9STRA) HSP 1 Score: 206 bits (524), Expect = 2.120e-61 Identity = 102/224 (45.54%), Postives = 133/224 (59.38%), Query Frame = 1
Query: 7 LLLQLLVLAALQQTATAVCPNFCSGHGTCGPENTCACNDGWTAAVDCSLRNCPLGAAWADKAY-ATDK--AHADVECSGAGICDGETGECQCFTPYVGSACQRLRCPNDCSSHGVCMTMADVVRYYGALGST---------------YDNWDKDSTTMCVCDAGYFGSDCTKRMCPKGDDPLTIGQASRQIEIEISS-TATLVGGTFD--FMFNGQLVTIATNA 615
++++LL+L A + A CPNFCSGHG CG N C C+ W A DCSLR+CP G +WA Y A++K AH ECS G C+ +TG C C P+ GSACQRL+CPNDCS HG C T+ +Y G + YDNWD DS+T C+CD G+ G+DC+ +MCPKGDDP+T Q ++I S T+T G D F F G+ VT+ + A
Sbjct: 1 MIVRLLLLLATCGISWAACPNFCSGHGDCGKHNVCKCDADWNVAPDCSLRSCPSGTSWASNTYMASNKVVAHTAFECSNVGTCNRKTGTCTCPAPFTGSACQRLQCPNDCSEHGFCATLRQASEFYTYAGGSDPDFAGTGPGSALYIYDNWDADSSTTCICDWGFTGADCSMKMCPKGDDPVTTAQDPPTFTVDIQSRTSTTSSGIMDLVFYFGGESVTLDSRA 224
BLAST of jgi.p|Trimin1|177974 vs. uniprot
Match: A0A6A3LPM3_9STRA (Uncharacterized protein n=10 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3LPM3_9STRA) HSP 1 Score: 218 bits (555), Expect = 2.450e-61 Identity = 106/221 (47.96%), Postives = 130/221 (58.82%), Query Frame = 1
Query: 19 LLVLAALQQTATAVCPNFCSGHGTCGPENTCACNDGWTAAVDCSLRNCPLGAAWADKAYATDKAHADVECSGAGICDGETGECQCFTPYVGSACQRLRCPNDCSSHGVCMTMADVVRYYG-----ALGSTYDNWDKDSTTMCVCDAGYFGSDCTKRMCPKGDDPLTIGQASRQIEIEISST---ATLVGGTFDFMFNGQLVTIATNAGDDACEAVSASAAY 657
LL+ + Q A A C N CSGHG CG N C C+ W A DCSLR CP G AW DKA + AHA ECS G+CD GEC CF Y G+ACQRLRCP+DCS HG+C + A + YG G TY NW+KDS T C+CD GY G DC++ MC K DDPLT GQA R I+I + + AT + G+ F G + + AG DA + + A+
Sbjct: 12 LLLPVVVVQVADAACANSCSGHGRCGASNQCTCDADWALAPDCSLRKCPTGVAWTDKAKTANAAHAVAECSNRGVCDYSKGECTCFNGYTGAACQRLRCPSDCSGHGLCYSSATLASQYGPSSLAGSGPTYTNWEKDSMTSCMCDMGYNGPDCSQFMCAKNDDPLTTGQAYRTIQIAVGADPTPATALAGSVRVHFLGDVAVFSAVAGADAAHETACAQAF 232 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|177974 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_16462 ID=mRNA_16462|Name=jgi.p|Trimin1|177974|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=735bp|location=Sequence derived from alignment at Contig_162:140631..144454- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCGGTTGCTGCTGCAGCTGCTGGTACTGGCAGCATTGCAACAGACAGCback to top protein sequence of jgi.p|Trimin1|177974 >Trimin1|177974|e_gw1.162.10.1 ID=Trimin1|177974|e_gw1.162.10.1|Name=jgi.p|Trimin1|177974|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=245bp MRLLLQLLVLAALQQTATAVCPNFCSGHGTCGPENTCACNDGWTAAVDCSback to top mRNA from alignment at Contig_162:140631..144454- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_16462 ID=mRNA_16462|Name=jgi.p|Trimin1|177974|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3824bp|location=Sequence derived from alignment at Contig_162:140631..144454- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_162:140631..144454- >mRNA_16462 ID=mRNA_16462|Name=jgi.p|Trimin1|177974|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=735bp|location=Sequence derived from alignment at Contig_162:140631..144454- (Tribonema minus UTEX_B_3156 )back to top |